data_1LOW # _model_server_result.job_id VkERh0mEFPOYc-STcMVsrw _model_server_result.datetime_utc '2024-10-15 02:13:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1low # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":106}' # _entry.id 1LOW # _exptl.entry_id 1LOW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LOW _cell.length_a 40.217 _cell.length_b 45.685 _cell.length_c 50.136 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LOW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc3 B CA CA . A CA 105 1_555 D O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc4 B CA CA . A CA 105 1_555 D O HOH . A HOH 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 3GP doub 1 n n P O2P 3GP sing 2 n n P O3P 3GP sing 3 n n P O3' 3GP sing 4 n n O2P HOP2 3GP sing 5 n n O3P HOP3 3GP sing 6 n n O5' C5' 3GP sing 7 n n O5' HO5' 3GP sing 8 n n C5' C4' 3GP sing 9 n n C5' "H5'1" 3GP sing 10 n n C5' "H5'2" 3GP sing 11 n n C4' O4' 3GP sing 12 n n C4' C3' 3GP sing 13 n n C4' H4' 3GP sing 14 n n O4' C1' 3GP sing 15 n n C3' O3' 3GP sing 16 n n C3' C2' 3GP sing 17 n n C3' H3' 3GP sing 18 n n C2' O2' 3GP sing 19 n n C2' C1' 3GP sing 20 n n C2' H2' 3GP sing 21 n n O2' HO2' 3GP sing 22 n n C1' N9 3GP sing 23 n n C1' H1' 3GP sing 24 n n N9 C8 3GP sing 25 n y N9 C4 3GP sing 26 n y C8 N7 3GP doub 27 n y C8 H8 3GP sing 28 n n N7 C5 3GP sing 29 n y C5 C6 3GP sing 30 n n C5 C4 3GP doub 31 n y C6 O6 3GP doub 32 n n C6 N1 3GP sing 33 n n N1 C2 3GP sing 34 n n N1 HN1 3GP sing 35 n n C2 N2 3GP sing 36 n n C2 N3 3GP doub 37 n n N2 HN21 3GP sing 38 n n N2 HN22 3GP sing 39 n n N3 C4 3GP sing 40 n n # _atom_sites.entry_id 1LOW _atom_sites.fract_transf_matrix[1][1] 0.024865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 105 105 CA CA . C 3 3GP A 1 106 106 3GP GMP . D 4 HOH A 1 201 201 HOH HOH . D 4 HOH A 2 202 202 HOH HOH . D 4 HOH A 3 203 203 HOH HOH . D 4 HOH A 4 204 204 HOH HOH . D 4 HOH A 5 205 205 HOH HOH . D 4 HOH A 6 206 206 HOH HOH . D 4 HOH A 7 207 207 HOH HOH . D 4 HOH A 8 208 208 HOH HOH . D 4 HOH A 9 209 209 HOH HOH . D 4 HOH A 10 210 210 HOH HOH . D 4 HOH A 11 211 211 HOH HOH . D 4 HOH A 12 212 212 HOH HOH . D 4 HOH A 13 213 213 HOH HOH . D 4 HOH A 14 214 214 HOH HOH . D 4 HOH A 15 215 215 HOH HOH . D 4 HOH A 16 216 216 HOH HOH . D 4 HOH A 17 217 217 HOH HOH . D 4 HOH A 18 218 218 HOH HOH . D 4 HOH A 19 219 219 HOH HOH . D 4 HOH A 20 220 220 HOH HOH . D 4 HOH A 21 221 221 HOH HOH . D 4 HOH A 22 222 222 HOH HOH . D 4 HOH A 23 223 223 HOH HOH . D 4 HOH A 24 224 224 HOH HOH . D 4 HOH A 25 225 225 HOH HOH . D 4 HOH A 26 226 226 HOH HOH . D 4 HOH A 27 227 227 HOH HOH . D 4 HOH A 28 228 228 HOH HOH . D 4 HOH A 29 229 229 HOH HOH . D 4 HOH A 30 230 230 HOH HOH . D 4 HOH A 31 231 231 HOH HOH . D 4 HOH A 32 232 232 HOH HOH . D 4 HOH A 33 233 233 HOH HOH . D 4 HOH A 34 234 234 HOH HOH . D 4 HOH A 35 235 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . . . C 3 20.183 20.981 12.195 1 55.85 ? P 3GP 106 A 1 HETATM 2 O O1P 3GP . . . C 3 19.751 22.396 12.282 1 58.88 ? O1P 3GP 106 A 1 HETATM 3 O O2P 3GP . . . C 3 19.088 20.01 12.443 1 50.94 ? O2P 3GP 106 A 1 HETATM 4 O O3P 3GP . . . C 3 21.485 20.69 12.859 1 58.66 ? O3P 3GP 106 A 1 HETATM 5 O O5' 3GP . . . C 3 23.92 18.722 9.835 1 60.57 ? O5' 3GP 106 A 1 HETATM 6 C C5' 3GP . . . C 3 23.477 20.04 9.441 1 54.39 ? C5' 3GP 106 A 1 HETATM 7 C C4' 3GP . . . C 3 22.026 20.053 8.913 1 49.1 ? C4' 3GP 106 A 1 HETATM 8 O O4' 3GP . . . C 3 21.895 19.12 7.847 1 43.38 ? O4' 3GP 106 A 1 HETATM 9 C C3' 3GP . . . C 3 21.046 19.622 10.001 1 49.7 ? C3' 3GP 106 A 1 HETATM 10 O O3' 3GP . . . C 3 20.553 20.815 10.626 1 51.53 ? O3' 3GP 106 A 1 HETATM 11 C C2' 3GP . . . C 3 19.979 18.803 9.281 1 46.32 ? C2' 3GP 106 A 1 HETATM 12 O O2' 3GP . . . C 3 18.707 19.452 9.166 1 50.11 ? O2' 3GP 106 A 1 HETATM 13 C C1' 3GP . . . C 3 20.548 18.615 7.854 1 42.69 ? C1' 3GP 106 A 1 HETATM 14 N N9 3GP . . . C 3 20.548 17.166 7.421 1 36.86 ? N9 3GP 106 A 1 HETATM 15 C C8 3GP . . . C 3 19.902 16.663 6.32 1 34.26 ? C8 3GP 106 A 1 HETATM 16 N N7 3GP . . . C 3 19.996 15.365 6.181 1 28.3 ? N7 3GP 106 A 1 HETATM 17 C C5 3GP . . . C 3 20.764 14.966 7.269 1 27.09 ? C5 3GP 106 A 1 HETATM 18 C C6 3GP . . . C 3 21.175 13.676 7.647 1 23.66 ? C6 3GP 106 A 1 HETATM 19 O O6 3GP . . . C 3 20.923 12.652 7.025 1 24.38 ? O6 3GP 106 A 1 HETATM 20 N N1 3GP . . . C 3 21.911 13.659 8.792 1 24.19 ? N1 3GP 106 A 1 HETATM 21 C C2 3GP . . . C 3 22.243 14.781 9.526 1 25.57 ? C2 3GP 106 A 1 HETATM 22 N N2 3GP . . . C 3 22.979 14.597 10.62 1 25.94 ? N2 3GP 106 A 1 HETATM 23 N N3 3GP . . . C 3 21.862 16.014 9.178 1 26.4 ? N3 3GP 106 A 1 HETATM 24 C C4 3GP . . . C 3 21.122 16.038 8.041 1 31.65 ? C4 3GP 106 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 668 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #