data_1LP6
#
_model_server_result.job_id            xIk-fhRkvNbHCeabRTpFug 
_model_server_result.datetime_utc      '2024-11-23 12:52:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lp6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2001}' 
#
_entry.id    1LP6 
#
_exptl.entry_id    1LP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.197 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.77 
_cell.angle_gamma         90 
_cell.entry_id            1LP6 
_cell.length_a            57.13 
_cell.length_b            55.663 
_cell.length_c            65.838 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C9 H14 N3 O8 P' 
_chem_comp.formula_weight    323.197 
_chem_comp.id                C5P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P C5P sing 70 n n 
O3P HOP3 C5P sing 71 n n 
P O1P C5P doub 72 n n 
P O2P C5P sing 73 n n 
P O5' C5P sing 74 n n 
O2P HOP2 C5P sing 75 n n 
O5' C5' C5P sing 76 n n 
C5' C4' C5P sing 77 n n 
C5' "H5'1" C5P sing 78 n n 
C5' "H5'2" C5P sing 79 n n 
C4' O4' C5P sing 80 n n 
C4' C3' C5P sing 81 n n 
C4' H4' C5P sing 82 n n 
O4' C1' C5P sing 83 n n 
C3' O3' C5P sing 84 n n 
C3' C2' C5P sing 85 n n 
C3' H3' C5P sing 86 n n 
O3' HO3' C5P sing 87 n n 
C2' O2' C5P sing 88 n n 
C2' C1' C5P sing 89 n n 
C2' "H2'1" C5P sing 90 n n 
O2' HO2' C5P sing 91 n n 
C1' N1 C5P sing 92 n n 
C1' H1' C5P sing 93 n n 
N1 C2 C5P sing 94 n n 
N1 C6 C5P sing 95 n n 
C2 N3 C5P sing 96 n n 
C2 O2 C5P doub 97 n n 
N3 C4 C5P doub 98 n n 
C4 C5 C5P sing 99 n n 
C4 N4 C5P sing 100 n n 
C5 C6 C5P doub 101 n n 
C5 H5 C5P sing 102 n n 
C6 H6 C5P sing 103 n n 
N4 HN41 C5P sing 104 n n 
N4 HN42 C5P sing 105 n n 
#
_atom_sites.entry_id                     1LP6 
_atom_sites.fract_transf_matrix[1][1]    0.017504 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001462 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015242 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C5P A 1 2001 2001 C5P C5P . 
D 2 C5P B 1 2002 2002 C5P C5P . 
E 3 HOH A 1 3002 3002 HOH TIP . 
E 3 HOH A 2 3006 3006 HOH TIP . 
E 3 HOH A 3 3008 3008 HOH TIP . 
E 3 HOH A 4 3009 3009 HOH TIP . 
E 3 HOH A 5 3010 3010 HOH TIP . 
E 3 HOH A 6 3011 3011 HOH TIP . 
E 3 HOH A 7 3013 3013 HOH TIP . 
E 3 HOH A 8 3014 3014 HOH TIP . 
E 3 HOH A 9 3015 3015 HOH TIP . 
E 3 HOH A 10 3018 3018 HOH TIP . 
E 3 HOH A 11 3019 3019 HOH TIP . 
E 3 HOH A 12 3020 3020 HOH TIP . 
E 3 HOH A 13 3022 3022 HOH TIP . 
E 3 HOH A 14 3025 3025 HOH TIP . 
E 3 HOH A 15 3026 3026 HOH TIP . 
E 3 HOH A 16 3028 3028 HOH TIP . 
E 3 HOH A 17 3029 3029 HOH TIP . 
E 3 HOH A 18 3030 3030 HOH TIP . 
E 3 HOH A 19 3035 3035 HOH TIP . 
E 3 HOH A 20 3036 3036 HOH TIP . 
E 3 HOH A 21 3037 3037 HOH TIP . 
E 3 HOH A 22 3040 3040 HOH TIP . 
E 3 HOH A 23 3041 3041 HOH TIP . 
E 3 HOH A 24 3042 3042 HOH TIP . 
E 3 HOH A 25 3047 3047 HOH TIP . 
E 3 HOH A 26 3048 3048 HOH TIP . 
E 3 HOH A 27 3049 3049 HOH TIP . 
E 3 HOH A 28 3053 3053 HOH TIP . 
E 3 HOH A 29 3055 3055 HOH TIP . 
E 3 HOH A 30 3057 3057 HOH TIP . 
E 3 HOH A 31 3058 3058 HOH TIP . 
E 3 HOH A 32 3063 3063 HOH TIP . 
E 3 HOH A 33 3064 3064 HOH TIP . 
E 3 HOH A 34 3065 3065 HOH TIP . 
E 3 HOH A 35 3066 3066 HOH TIP . 
E 3 HOH A 36 3067 3067 HOH TIP . 
E 3 HOH A 37 3068 3068 HOH TIP . 
E 3 HOH A 38 3069 3069 HOH TIP . 
E 3 HOH A 39 3070 3070 HOH TIP . 
E 3 HOH A 40 3072 3072 HOH TIP . 
E 3 HOH A 41 3073 3073 HOH TIP . 
E 3 HOH A 42 3076 3076 HOH TIP . 
E 3 HOH A 43 3077 3077 HOH TIP . 
E 3 HOH A 44 3082 3082 HOH TIP . 
E 3 HOH A 45 3086 3086 HOH TIP . 
E 3 HOH A 46 3087 3087 HOH TIP . 
E 3 HOH A 47 3088 3088 HOH TIP . 
E 3 HOH A 48 3089 3089 HOH TIP . 
E 3 HOH A 49 3090 3090 HOH TIP . 
E 3 HOH A 50 3092 3092 HOH TIP . 
E 3 HOH A 51 3093 3093 HOH TIP . 
E 3 HOH A 52 3095 3095 HOH TIP . 
E 3 HOH A 53 3096 3096 HOH TIP . 
E 3 HOH A 54 3098 3098 HOH TIP . 
E 3 HOH A 55 3101 3101 HOH TIP . 
E 3 HOH A 56 3109 3109 HOH TIP . 
E 3 HOH A 57 3110 3110 HOH TIP . 
E 3 HOH A 58 3111 3111 HOH TIP . 
E 3 HOH A 59 3114 3114 HOH TIP . 
E 3 HOH A 60 3117 3117 HOH TIP . 
E 3 HOH A 61 3118 3118 HOH TIP . 
E 3 HOH A 62 3119 3119 HOH TIP . 
E 3 HOH A 63 3120 3120 HOH TIP . 
E 3 HOH A 64 3121 3121 HOH TIP . 
E 3 HOH A 65 3122 3122 HOH TIP . 
E 3 HOH A 66 3125 3125 HOH TIP . 
E 3 HOH A 67 3126 3126 HOH TIP . 
E 3 HOH A 68 3127 3127 HOH TIP . 
E 3 HOH A 69 3130 3130 HOH TIP . 
E 3 HOH A 70 3131 3131 HOH TIP . 
E 3 HOH A 71 3133 3133 HOH TIP . 
E 3 HOH A 72 3135 3135 HOH TIP . 
E 3 HOH A 73 3136 3136 HOH TIP . 
E 3 HOH A 74 3137 3137 HOH TIP . 
E 3 HOH A 75 3138 3138 HOH TIP . 
E 3 HOH A 76 3139 3139 HOH TIP . 
E 3 HOH A 77 3140 3140 HOH TIP . 
E 3 HOH A 78 3141 3141 HOH TIP . 
E 3 HOH A 79 3142 3142 HOH TIP . 
E 3 HOH A 80 3143 3143 HOH TIP . 
E 3 HOH A 81 3144 3144 HOH TIP . 
E 3 HOH A 82 3145 3145 HOH TIP . 
E 3 HOH A 83 3148 3148 HOH TIP . 
E 3 HOH A 84 3149 3149 HOH TIP . 
E 3 HOH A 85 3150 3150 HOH TIP . 
E 3 HOH A 86 3151 3151 HOH TIP . 
E 3 HOH A 87 3152 3152 HOH TIP . 
E 3 HOH A 88 3153 3153 HOH TIP . 
E 3 HOH A 89 3158 3158 HOH TIP . 
E 3 HOH A 90 3162 3162 HOH TIP . 
F 3 HOH B 1 3001 3001 HOH TIP . 
F 3 HOH B 2 3003 3003 HOH TIP . 
F 3 HOH B 3 3004 3004 HOH TIP . 
F 3 HOH B 4 3005 3005 HOH TIP . 
F 3 HOH B 5 3007 3007 HOH TIP . 
F 3 HOH B 6 3012 3012 HOH TIP . 
F 3 HOH B 7 3016 3016 HOH TIP . 
F 3 HOH B 8 3017 3017 HOH TIP . 
F 3 HOH B 9 3021 3021 HOH TIP . 
F 3 HOH B 10 3023 3023 HOH TIP . 
F 3 HOH B 11 3024 3024 HOH TIP . 
F 3 HOH B 12 3027 3027 HOH TIP . 
F 3 HOH B 13 3031 3031 HOH TIP . 
F 3 HOH B 14 3032 3032 HOH TIP . 
F 3 HOH B 15 3033 3033 HOH TIP . 
F 3 HOH B 16 3034 3034 HOH TIP . 
F 3 HOH B 17 3038 3038 HOH TIP . 
F 3 HOH B 18 3039 3039 HOH TIP . 
F 3 HOH B 19 3043 3043 HOH TIP . 
F 3 HOH B 20 3044 3044 HOH TIP . 
F 3 HOH B 21 3045 3045 HOH TIP . 
F 3 HOH B 22 3046 3046 HOH TIP . 
F 3 HOH B 23 3050 3050 HOH TIP . 
F 3 HOH B 24 3051 3051 HOH TIP . 
F 3 HOH B 25 3052 3052 HOH TIP . 
F 3 HOH B 26 3054 3054 HOH TIP . 
F 3 HOH B 27 3056 3056 HOH TIP . 
F 3 HOH B 28 3059 3059 HOH TIP . 
F 3 HOH B 29 3060 3060 HOH TIP . 
F 3 HOH B 30 3061 3061 HOH TIP . 
F 3 HOH B 31 3062 3062 HOH TIP . 
F 3 HOH B 32 3071 3071 HOH TIP . 
F 3 HOH B 33 3074 3074 HOH TIP . 
F 3 HOH B 34 3075 3075 HOH TIP . 
F 3 HOH B 35 3078 3078 HOH TIP . 
F 3 HOH B 36 3079 3079 HOH TIP . 
F 3 HOH B 37 3080 3080 HOH TIP . 
F 3 HOH B 38 3081 3081 HOH TIP . 
F 3 HOH B 39 3083 3083 HOH TIP . 
F 3 HOH B 40 3084 3084 HOH TIP . 
F 3 HOH B 41 3085 3085 HOH TIP . 
F 3 HOH B 42 3091 3091 HOH TIP . 
F 3 HOH B 43 3094 3094 HOH TIP . 
F 3 HOH B 44 3097 3097 HOH TIP . 
F 3 HOH B 45 3099 3099 HOH TIP . 
F 3 HOH B 46 3100 3100 HOH TIP . 
F 3 HOH B 47 3102 3102 HOH TIP . 
F 3 HOH B 48 3103 3103 HOH TIP . 
F 3 HOH B 49 3104 3104 HOH TIP . 
F 3 HOH B 50 3105 3105 HOH TIP . 
F 3 HOH B 51 3106 3106 HOH TIP . 
F 3 HOH B 52 3107 3107 HOH TIP . 
F 3 HOH B 53 3108 3108 HOH TIP . 
F 3 HOH B 54 3112 3112 HOH TIP . 
F 3 HOH B 55 3113 3113 HOH TIP . 
F 3 HOH B 56 3115 3115 HOH TIP . 
F 3 HOH B 57 3116 3116 HOH TIP . 
F 3 HOH B 58 3123 3123 HOH TIP . 
F 3 HOH B 59 3124 3124 HOH TIP . 
F 3 HOH B 60 3128 3128 HOH TIP . 
F 3 HOH B 61 3129 3129 HOH TIP . 
F 3 HOH B 62 3132 3132 HOH TIP . 
F 3 HOH B 63 3134 3134 HOH TIP . 
F 3 HOH B 64 3146 3146 HOH TIP . 
F 3 HOH B 65 3147 3147 HOH TIP . 
F 3 HOH B 66 3154 3154 HOH TIP . 
F 3 HOH B 67 3155 3155 HOH TIP . 
F 3 HOH B 68 3156 3156 HOH TIP . 
F 3 HOH B 69 3157 3157 HOH TIP . 
F 3 HOH B 70 3159 3159 HOH TIP . 
F 3 HOH B 71 3160 3160 HOH TIP . 
F 3 HOH B 72 3161 3161 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P C5P . . . C 2 1.588 36.228 43.915 1 27.17 ? O3P C5P 2001 A 1 
HETATM 2 P P C5P . . . C 2 2.852 36.84 44.366 1 28.35 ? P C5P 2001 A 1 
HETATM 3 O O1P C5P . . . C 2 3.799 36.001 45.145 1 28.55 ? O1P C5P 2001 A 1 
HETATM 4 O O2P C5P . . . C 2 3.528 37.417 43.115 1 29 ? O2P C5P 2001 A 1 
HETATM 5 O O5' C5P . . . C 2 2.482 38.123 45.235 1 29.32 ? O5' C5P 2001 A 1 
HETATM 6 C C5' C5P . . . C 2 1.836 37.945 46.515 1 26.32 ? C5' C5P 2001 A 1 
HETATM 7 C C4' C5P . . . C 2 1.557 39.284 47.118 1 26.35 ? C4' C5P 2001 A 1 
HETATM 8 O O4' C5P . . . C 2 2.698 40.165 46.964 1 29.26 ? O4' C5P 2001 A 1 
HETATM 9 C C3' C5P . . . C 2 0.359 40.008 46.535 1 26.88 ? C3' C5P 2001 A 1 
HETATM 10 O O3' C5P . . . C 2 -0.841 39.557 47.088 1 22.58 ? O3' C5P 2001 A 1 
HETATM 11 C C2' C5P . . . C 2 0.651 41.467 46.817 1 31.09 ? C2' C5P 2001 A 1 
HETATM 12 O O2' C5P . . . C 2 0.06 41.938 48.004 1 34.01 ? O2' C5P 2001 A 1 
HETATM 13 C C1' C5P . . . C 2 2.197 41.52 46.826 1 31.91 ? C1' C5P 2001 A 1 
HETATM 14 N N1 C5P . . . C 2 2.701 42.208 45.656 1 36.07 ? N1 C5P 2001 A 1 
HETATM 15 C C2 C5P . . . C 2 3.212 43.547 45.825 1 36.93 ? C2 C5P 2001 A 1 
HETATM 16 N N3 C5P . . . C 2 3.701 44.263 44.774 1 39.21 ? N3 C5P 2001 A 1 
HETATM 17 C C4 C5P . . . C 2 3.737 43.749 43.492 1 39.71 ? C4 C5P 2001 A 1 
HETATM 18 C C5 C5P . . . C 2 3.256 42.466 43.303 1 40.71 ? C5 C5P 2001 A 1 
HETATM 19 C C6 C5P . . . C 2 2.761 41.697 44.275 1 36.62 ? C6 C5P 2001 A 1 
HETATM 20 O O2 C5P . . . C 2 3.205 44.11 47.055 1 40.34 ? O2 C5P 2001 A 1 
HETATM 21 N N4 C5P . . . C 2 4.229 44.508 42.484 1 46.26 ? N4 C5P 2001 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#