data_1LPF # _model_server_result.job_id A0IYFB8CQPGzFE3HFD2toQ _model_server_result.datetime_utc '2024-12-02 05:38:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":480}' # _entry.id 1LPF # _exptl.entry_id 1LPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.2 _cell.angle_gamma 90 _cell.entry_id 1LPF _cell.length_a 113.6 _cell.length_b 66.4 _cell.length_c 164.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 A SG CYS 53 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf2 B SG CYS 48 B CYS 48 1_555 B SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1LPF _atom_sites.fract_transf_matrix[1][1] 0.008803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 480 480 FAD FAD . D 2 FAD B 1 480 480 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 -10.286 -1.519 -20.376 1 20.46 ? PA FAD 480 A 1 HETATM 2 O O1A FAD . . . C 2 -10.365 -1.165 -21.816 1 22.61 ? O1A FAD 480 A 1 HETATM 3 O O2A FAD . . . C 2 -9.691 -2.813 -19.97 1 21.33 ? O2A FAD 480 A 1 HETATM 4 O O5B FAD . . . C 2 -9.567 -0.233 -19.728 1 23.24 ? O5B FAD 480 A 1 HETATM 5 C C5B FAD . . . C 2 -9.089 -0.217 -18.375 1 28.83 ? C5B FAD 480 A 1 HETATM 6 C C4B FAD . . . C 2 -7.936 0.773 -18.2 1 30.29 ? C4B FAD 480 A 1 HETATM 7 O O4B FAD . . . C 2 -7.676 0.899 -16.789 1 32.28 ? O4B FAD 480 A 1 HETATM 8 C C3B FAD . . . C 2 -6.652 0.296 -18.847 1 28.71 ? C3B FAD 480 A 1 HETATM 9 O O3B FAD . . . C 2 -6.113 1.261 -19.757 1 26.1 ? O3B FAD 480 A 1 HETATM 10 C C2B FAD . . . C 2 -5.76 -0.043 -17.658 1 28.45 ? C2B FAD 480 A 1 HETATM 11 O O2B FAD . . . C 2 -4.394 0.229 -17.983 1 30.15 ? O2B FAD 480 A 1 HETATM 12 C C1B FAD . . . C 2 -6.268 0.889 -16.583 1 30.08 ? C1B FAD 480 A 1 HETATM 13 N N9A FAD . . . C 2 -5.937 0.54 -15.177 1 26.74 ? N9A FAD 480 A 1 HETATM 14 C C8A FAD . . . C 2 -6.396 -0.517 -14.506 1 26.24 ? C8A FAD 480 A 1 HETATM 15 N N7A FAD . . . C 2 -6.145 -0.412 -13.2 1 26.28 ? N7A FAD 480 A 1 HETATM 16 C C5A FAD . . . C 2 -5.52 0.742 -13.094 1 23.72 ? C5A FAD 480 A 1 HETATM 17 C C6A FAD . . . C 2 -5.241 1.316 -11.878 1 22.55 ? C6A FAD 480 A 1 HETATM 18 N N6A FAD . . . C 2 -5.465 0.685 -10.736 1 21.69 ? N6A FAD 480 A 1 HETATM 19 N N1A FAD . . . C 2 -4.788 2.565 -11.933 1 22.8 ? N1A FAD 480 A 1 HETATM 20 C C2A FAD . . . C 2 -4.602 3.153 -13.107 1 27.3 ? C2A FAD 480 A 1 HETATM 21 N N3A FAD . . . C 2 -4.852 2.584 -14.279 1 26.83 ? N3A FAD 480 A 1 HETATM 22 C C4A FAD . . . C 2 -5.362 1.352 -14.295 1 24.45 ? C4A FAD 480 A 1 HETATM 23 N N1 FAD . . . C 2 -15.703 -4.897 -27.221 1 25.62 ? N1 FAD 480 A 1 HETATM 24 C C2 FAD . . . C 2 -16.612 -4.344 -28.031 1 22.47 ? C2 FAD 480 A 1 HETATM 25 O O2 FAD . . . C 2 -17.499 -3.691 -27.504 1 21.4 ? O2 FAD 480 A 1 HETATM 26 N N3 FAD . . . C 2 -16.409 -4.271 -29.404 1 23.25 ? N3 FAD 480 A 1 HETATM 27 C C4 FAD . . . C 2 -15.192 -4.736 -29.904 1 26.76 ? C4 FAD 480 A 1 HETATM 28 O O4 FAD . . . C 2 -14.954 -4.662 -31.113 1 23.93 ? O4 FAD 480 A 1 HETATM 29 C C4X FAD . . . C 2 -14.246 -5.26 -29.019 1 25.96 ? C4X FAD 480 A 1 HETATM 30 N N5 FAD . . . C 2 -13.156 -5.838 -29.509 1 27 ? N5 FAD 480 A 1 HETATM 31 C C5X FAD . . . C 2 -12.266 -6.41 -28.711 1 25.09 ? C5X FAD 480 A 1 HETATM 32 C C6 FAD . . . C 2 -11.193 -7.058 -29.321 1 25.05 ? C6 FAD 480 A 1 HETATM 33 C C7 FAD . . . C 2 -10.249 -7.743 -28.579 1 23.85 ? C7 FAD 480 A 1 HETATM 34 C C7M FAD . . . C 2 -9.192 -8.58 -29.297 1 19.1 ? C7M FAD 480 A 1 HETATM 35 C C8 FAD . . . C 2 -10.373 -7.744 -27.208 1 25.56 ? C8 FAD 480 A 1 HETATM 36 C C8M FAD . . . C 2 -9.199 -8.079 -26.289 1 27.28 ? C8M FAD 480 A 1 HETATM 37 C C9 FAD . . . C 2 -11.493 -7.178 -26.617 1 27.18 ? C9 FAD 480 A 1 HETATM 38 C C9A FAD . . . C 2 -12.499 -6.513 -27.348 1 26.85 ? C9A FAD 480 A 1 HETATM 39 N N10 FAD . . . C 2 -13.619 -5.895 -26.878 1 26.25 ? N10 FAD 480 A 1 HETATM 40 C C10 FAD . . . C 2 -14.529 -5.376 -27.672 1 24.38 ? C10 FAD 480 A 1 HETATM 41 C C1' FAD . . . C 2 -13.731 -5.769 -25.466 1 17.16 ? C1' FAD 480 A 1 HETATM 42 C C2' FAD . . . C 2 -13.514 -4.333 -25.102 1 10.11 ? C2' FAD 480 A 1 HETATM 43 O O2' FAD . . . C 2 -12.245 -3.787 -25.348 1 13.94 ? O2' FAD 480 A 1 HETATM 44 C C3' FAD . . . C 2 -13.712 -4.249 -23.595 1 10.85 ? C3' FAD 480 A 1 HETATM 45 O O3' FAD . . . C 2 -15.032 -4.697 -23.317 1 14.61 ? O3' FAD 480 A 1 HETATM 46 C C4' FAD . . . C 2 -13.652 -2.82 -23.072 1 9.44 ? C4' FAD 480 A 1 HETATM 47 O O4' FAD . . . C 2 -12.478 -2.187 -23.549 1 14.31 ? O4' FAD 480 A 1 HETATM 48 C C5' FAD . . . C 2 -13.64 -2.73 -21.556 1 12.87 ? C5' FAD 480 A 1 HETATM 49 O O5' FAD . . . C 2 -13.494 -1.356 -21.203 1 14.62 ? O5' FAD 480 A 1 HETATM 50 P P FAD . . . C 2 -13.112 -0.908 -19.722 1 14.6 ? P FAD 480 A 1 HETATM 51 O O1P FAD . . . C 2 -13.012 0.57 -19.766 1 19.46 ? O1P FAD 480 A 1 HETATM 52 O O2P FAD . . . C 2 -13.927 -1.535 -18.65 1 16.21 ? O2P FAD 480 A 1 HETATM 53 O O3P FAD . . . C 2 -11.692 -1.589 -19.631 1 18.79 ? O3P FAD 480 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 968 _model_server_stats.encode_time_ms 34 _model_server_stats.element_count 53 #