data_1LPF
#
_model_server_result.job_id            oiHI2b-Xh08vpmtrcrN7NQ 
_model_server_result.datetime_utc      '2024-12-02 05:27:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lpf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":480}' 
#
_entry.id    1LPF 
#
_exptl.entry_id    1LPF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.2 
_cell.angle_gamma         90 
_cell.entry_id            1LPF 
_cell.length_a            113.6 
_cell.length_b            66.4 
_cell.length_c            164.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 A SG CYS 53 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
disulf ? disulf2 B SG CYS 48 B CYS 48 1_555 B SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1LPF 
_atom_sites.fract_transf_matrix[1][1]    0.008803 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001426 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 480 480 FAD FAD . 
D 2 FAD B 1 480 480 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 -41.949 2.136 -63.762 1 25.21 ? PA FAD 480 B 1 
HETATM 2 O O1A FAD . . . D 2 -40.815 1.462 -63.081 1 25.16 ? O1A FAD 480 B 1 
HETATM 3 O O2A FAD . . . D 2 -41.703 3.014 -64.93 1 21.36 ? O2A FAD 480 B 1 
HETATM 4 O O5B FAD . . . D 2 -42.931 0.937 -64.171 1 31.44 ? O5B FAD 480 B 1 
HETATM 5 C C5B FAD . . . D 2 -43.955 1.173 -65.173 1 35.98 ? C5B FAD 480 B 1 
HETATM 6 C C4B FAD . . . D 2 -44.361 -0.045 -66.005 1 36.77 ? C4B FAD 480 B 1 
HETATM 7 O O4B FAD . . . D 2 -45.661 0.11 -66.62 1 37.53 ? O4B FAD 480 B 1 
HETATM 8 C C3B FAD . . . D 2 -43.364 -0.346 -67.119 1 35.44 ? C3B FAD 480 B 1 
HETATM 9 O O3B FAD . . . D 2 -42.948 -1.724 -67.068 1 35.29 ? O3B FAD 480 B 1 
HETATM 10 C C2B FAD . . . D 2 -44.146 -0.111 -68.399 1 34.43 ? C2B FAD 480 B 1 
HETATM 11 O O2B FAD . . . D 2 -43.654 -0.998 -69.416 1 35.04 ? O2B FAD 480 B 1 
HETATM 12 C C1B FAD . . . D 2 -45.552 -0.457 -67.941 1 35.49 ? C1B FAD 480 B 1 
HETATM 13 N N9A FAD . . . D 2 -46.607 0.101 -68.809 1 34.25 ? N9A FAD 480 B 1 
HETATM 14 C C8A FAD . . . D 2 -46.8 1.402 -69.071 1 32.93 ? C8A FAD 480 B 1 
HETATM 15 N N7A FAD . . . D 2 -47.976 1.6 -69.67 1 34.56 ? N7A FAD 480 B 1 
HETATM 16 C C5A FAD . . . D 2 -48.468 0.378 -69.797 1 33.83 ? C5A FAD 480 B 1 
HETATM 17 C C6A FAD . . . D 2 -49.673 0.115 -70.408 1 31.17 ? C6A FAD 480 B 1 
HETATM 18 N N6A FAD . . . D 2 -50.529 1.093 -70.695 1 31.65 ? N6A FAD 480 B 1 
HETATM 19 N N1A FAD . . . D 2 -49.995 -1.18 -70.443 1 31.62 ? N1A FAD 480 B 1 
HETATM 20 C C2A FAD . . . D 2 -49.219 -2.123 -69.914 1 33.79 ? C2A FAD 480 B 1 
HETATM 21 N N3A FAD . . . D 2 -48.064 -1.861 -69.319 1 37.88 ? N3A FAD 480 B 1 
HETATM 22 C C4A FAD . . . D 2 -47.655 -0.581 -69.26 1 35.18 ? C4A FAD 480 B 1 
HETATM 23 N N1 FAD . . . D 2 -35.562 5.014 -57.697 1 26.4 ? N1 FAD 480 B 1 
HETATM 24 C C2 FAD . . . D 2 -35.213 4.643 -56.445 1 23.65 ? C2 FAD 480 B 1 
HETATM 25 O O2 FAD . . . D 2 -36.061 4.631 -55.552 1 18.24 ? O2 FAD 480 B 1 
HETATM 26 N N3 FAD . . . D 2 -33.947 4.113 -56.193 1 26.12 ? N3 FAD 480 B 1 
HETATM 27 C C4 FAD . . . D 2 -33.087 3.919 -57.29 1 30.65 ? C4 FAD 480 B 1 
HETATM 28 O O4 FAD . . . D 2 -31.986 3.385 -57.11 1 29.45 ? O4 FAD 480 B 1 
HETATM 29 C C4X FAD . . . D 2 -33.507 4.28 -58.585 1 29.39 ? C4X FAD 480 B 1 
HETATM 30 N N5 FAD . . . D 2 -32.627 4.23 -59.587 1 26.28 ? N5 FAD 480 B 1 
HETATM 31 C C5X FAD . . . D 2 -32.955 4.679 -60.795 1 25.49 ? C5X FAD 480 B 1 
HETATM 32 C C6 FAD . . . D 2 -31.974 4.592 -61.784 1 26.91 ? C6 FAD 480 B 1 
HETATM 33 C C7 FAD . . . D 2 -32.234 4.99 -63.089 1 26.36 ? C7 FAD 480 B 1 
HETATM 34 C C7M FAD . . . D 2 -31.137 5.018 -64.153 1 22.34 ? C7M FAD 480 B 1 
HETATM 35 C C8 FAD . . . D 2 -33.484 5.477 -63.394 1 25.34 ? C8 FAD 480 B 1 
HETATM 36 C C8M FAD . . . D 2 -33.835 5.758 -64.852 1 27.5 ? C8M FAD 480 B 1 
HETATM 37 C C9 FAD . . . D 2 -34.417 5.649 -62.384 1 22.93 ? C9 FAD 480 B 1 
HETATM 38 C C9A FAD . . . D 2 -34.189 5.286 -61.04 1 24.16 ? C9A FAD 480 B 1 
HETATM 39 N N10 FAD . . . D 2 -35.05 5.303 -59.997 1 22.54 ? N10 FAD 480 B 1 
HETATM 40 C C10 FAD . . . D 2 -34.745 4.897 -58.775 1 25.89 ? C10 FAD 480 B 1 
HETATM 41 C C1' FAD . . . D 2 -36.402 5.676 -60.302 1 19.15 ? C1' FAD 480 B 1 
HETATM 42 C C2' FAD . . . D 2 -37.231 4.34 -60.305 1 14.46 ? C2' FAD 480 B 1 
HETATM 43 O O2' FAD . . . D 2 -37.06 3.406 -61.361 1 15.73 ? O2' FAD 480 B 1 
HETATM 44 C C3' FAD . . . D 2 -38.678 4.827 -60.372 1 13.02 ? C3' FAD 480 B 1 
HETATM 45 O O3' FAD . . . D 2 -38.851 5.744 -59.295 1 10.86 ? O3' FAD 480 B 1 
HETATM 46 C C4' FAD . . . D 2 -39.693 3.69 -60.197 1 16.18 ? C4' FAD 480 B 1 
HETATM 47 O O4' FAD . . . D 2 -39.305 2.533 -60.955 1 21.61 ? O4' FAD 480 B 1 
HETATM 48 C C5' FAD . . . D 2 -41.117 4.073 -60.631 1 21.83 ? C5' FAD 480 B 1 
HETATM 49 O O5' FAD . . . D 2 -42.015 2.966 -60.393 1 26.82 ? O5' FAD 480 B 1 
HETATM 50 P P FAD . . . D 2 -43.35 2.763 -61.247 1 22.24 ? P FAD 480 B 1 
HETATM 51 O O1P FAD . . . D 2 -43.861 1.412 -60.928 1 22.83 ? O1P FAD 480 B 1 
HETATM 52 O O2P FAD . . . D 2 -44.168 3.948 -60.914 1 23.95 ? O2P FAD 480 B 1 
HETATM 53 O O3P FAD . . . D 2 -42.883 2.922 -62.758 1 17.35 ? O3P FAD 480 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#