data_1LPH # _model_server_result.job_id 7Dz5YadH5DQpaI7u5ldkoA _model_server_result.datetime_utc '2024-11-04 20:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":31}' # _entry.id 1LPH # _exptl.entry_id 1LPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LPH _cell.length_a 79.62 _cell.length_b 79.62 _cell.length_c 37.78 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 PISA dodecameric 12 software_defined_assembly 4 PISA dodecameric 12 software_defined_assembly 5 PISA tetrameric 4 software_defined_assembly 6 PISA tetrameric 4 software_defined_assembly 7 PISA hexameric 6 software_defined_assembly 8 PISA hexameric 6 software_defined_assembly 9 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,I,J 1 1 C,D,F,G,H,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 1,2,3 A,B,E,I,J 4 1,2,3 C,D,F,G,H,K,L 4 4,5,6 D,G,H,L 5 4,5,6 A,B,C,E,F,I,J,K 5 1,2,3 C,D,F,G,H,K,L 6 1 A,B,E,I,J 6 2 A,B,C,D,E,F,G,H,I,J,K,L 7 1 C,D,F,G,H,K,L 8 1,2,3 A,B,E,I,J 9 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -37.78 5 'crystal symmetry operation' 2_554 -y,x-y,z-1 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 -37.78 6 'crystal symmetry operation' 3_554 -x+y,-x,z-1 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 -37.78 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 B NE2 HIS 10 B HIS 10 2_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 B NE2 HIS 10 B HIS 10 3_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc4 D NE2 HIS 10 D HIS 10 1_555 G ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 D NE2 HIS 10 D HIS 10 2_555 G ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc6 D NE2 HIS 10 D HIS 10 3_555 G ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc7 G ZN ZN . D ZN 31 1_555 H CL CL . D CL 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc8 G ZN ZN . D ZN 31 1_555 H CL CL . D CL 32 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 G ZN ZN . D ZN 31 1_555 H CL CL . D CL 32 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LPH _atom_sites.fract_transf_matrix[1][1] 0.01256 _atom_sites.fract_transf_matrix[1][2] 0.007251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 31 31 ZN ZN . F 4 IPH C 1 100 100 IPH IPH . G 3 ZN D 1 31 31 ZN ZN . H 5 CL D 1 32 32 CL CL . I 6 HOH A 1 22 5 HOH HOH . I 6 HOH A 2 23 6 HOH HOH . I 6 HOH A 3 24 20 HOH HOH . I 6 HOH A 4 25 29 HOH HOH . I 6 HOH A 5 26 32 HOH HOH . I 6 HOH A 6 27 36 HOH HOH . I 6 HOH A 7 28 41 HOH HOH . I 6 HOH A 8 29 42 HOH HOH . I 6 HOH A 9 30 56 HOH HOH . I 6 HOH A 10 31 57 HOH HOH . J 6 HOH B 1 32 1 HOH HOH . J 6 HOH B 2 33 4 HOH HOH . J 6 HOH B 3 34 7 HOH HOH . J 6 HOH B 4 35 8 HOH HOH . J 6 HOH B 5 36 9 HOH HOH . J 6 HOH B 6 37 10 HOH HOH . J 6 HOH B 7 38 11 HOH HOH . J 6 HOH B 8 39 15 HOH HOH . J 6 HOH B 9 40 17 HOH HOH . J 6 HOH B 10 41 19 HOH HOH . J 6 HOH B 11 42 22 HOH HOH . J 6 HOH B 12 43 23 HOH HOH . J 6 HOH B 13 44 31 HOH HOH . J 6 HOH B 14 45 35 HOH HOH . J 6 HOH B 15 46 38 HOH HOH . J 6 HOH B 16 47 43 HOH HOH . J 6 HOH B 17 48 49 HOH HOH . J 6 HOH B 18 49 54 HOH HOH . J 6 HOH B 19 50 59 HOH HOH . K 6 HOH C 1 101 2 HOH HOH . K 6 HOH C 2 102 14 HOH HOH . K 6 HOH C 3 103 18 HOH HOH . K 6 HOH C 4 104 24 HOH HOH . K 6 HOH C 5 105 25 HOH HOH . K 6 HOH C 6 106 26 HOH HOH . K 6 HOH C 7 107 34 HOH HOH . K 6 HOH C 8 108 39 HOH HOH . K 6 HOH C 9 109 40 HOH HOH . K 6 HOH C 10 110 45 HOH HOH . K 6 HOH C 11 111 46 HOH HOH . K 6 HOH C 12 112 47 HOH HOH . K 6 HOH C 13 113 48 HOH HOH . K 6 HOH C 14 114 51 HOH HOH . L 6 HOH D 1 33 3 HOH HOH . L 6 HOH D 2 34 12 HOH HOH . L 6 HOH D 3 35 13 HOH HOH . L 6 HOH D 4 36 16 HOH HOH . L 6 HOH D 5 37 21 HOH HOH . L 6 HOH D 6 38 27 HOH HOH . L 6 HOH D 7 39 28 HOH HOH . L 6 HOH D 8 40 30 HOH HOH . L 6 HOH D 9 41 33 HOH HOH . L 6 HOH D 10 42 37 HOH HOH . L 6 HOH D 11 43 44 HOH HOH . L 6 HOH D 12 44 50 HOH HOH . L 6 HOH D 13 45 52 HOH HOH . L 6 HOH D 14 46 53 HOH HOH . L 6 HOH D 15 47 55 HOH HOH . L 6 HOH D 16 48 58 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z 8.061 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 21.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 31 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #