data_1LPN
#
_model_server_result.job_id            UTA65i9i2XtnT3Vjw7OCOQ 
_model_server_result.datetime_utc      '2024-11-09 02:11:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lpn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":991}' 
#
_entry.id    1LPN 
#
_exptl.entry_id    1LPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LPN 
_cell.length_a            65 
_cell.length_b            97.4 
_cell.length_c            176.4 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 97.4 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   NAG 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG ? 992 NAG 
2 n B NAG 2 B 2 NAG ? 994 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 75 A CYS 60 1_555 A SG CYS 112 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf2 A SG CYS 283 A CYS 268 1_555 A SG CYS 292 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A OG SER 224 A SER 209 1_555 F S DSC . A DSC 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? 
covale ? covale2 A ND2 ASN 329 A ASN 314 1_555 C C1 NAG . A NAG 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? 
covale ? covale3 A ND2 ASN 366 A ASN 351 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale4 A NE2 HIS 464 A HIS 449 1_555 G S DSC . A DSC 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.65 ? 
covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? 
metalc ? metalc1 A OD2 ASP 275 A ASP 260 1_555 D CA CA . A CA 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc2 A OD1 ASP 275 A ASP 260 1_555 D CA CA . A CA 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc3 A O GLY 341 A GLY 326 1_555 E CA CA . A CA 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc4 A O GLY 341 A GLY 326 3_754 E CA CA . A CA 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 277 n n 
C1 O1 NAG sing 278 n n 
C1 O5 NAG sing 279 n n 
C1 H1 NAG sing 280 n n 
C2 C3 NAG sing 281 n n 
C2 N2 NAG sing 282 n n 
C2 H2 NAG sing 283 n n 
C3 C4 NAG sing 284 n n 
C3 O3 NAG sing 285 n n 
C3 H3 NAG sing 286 n n 
C4 C5 NAG sing 287 n n 
C4 O4 NAG sing 288 n n 
C4 H4 NAG sing 289 n n 
C5 C6 NAG sing 290 n n 
C5 O5 NAG sing 291 n n 
C5 H5 NAG sing 292 n n 
C6 O6 NAG sing 293 n n 
C6 H61 NAG sing 294 n n 
C6 H62 NAG sing 295 n n 
C7 C8 NAG sing 296 n n 
C7 N2 NAG sing 297 n n 
C7 O7 NAG doub 298 n n 
C8 H81 NAG sing 299 n n 
C8 H82 NAG sing 300 n n 
C8 H83 NAG sing 301 n n 
N2 HN2 NAG sing 302 n n 
O1 HO1 NAG sing 303 n n 
O3 HO3 NAG sing 304 n n 
O4 HO4 NAG sing 305 n n 
O6 HO6 NAG sing 306 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1LPN 
_atom_sites.fract_transf_matrix[1][1]    0.015385 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010267 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005669 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 991 991 NAG NAG . 
D 4 CA A 1 589 589 CA CA . 
E 4 CA A 1 590 590 CA CA . 
F 5 DSC A 1 560 560 DSC DSC . 
G 5 DSC A 1 561 561 DSC DSC . 
H 6 HOH A 1 601 601 HOH HOH . 
H 6 HOH A 2 602 602 HOH HOH . 
H 6 HOH A 3 603 603 HOH HOH . 
H 6 HOH A 4 604 604 HOH HOH . 
H 6 HOH A 5 605 605 HOH HOH . 
H 6 HOH A 6 606 606 HOH HOH . 
H 6 HOH A 7 607 607 HOH HOH . 
H 6 HOH A 8 608 608 HOH HOH . 
H 6 HOH A 9 609 609 HOH HOH . 
H 6 HOH A 10 610 610 HOH HOH . 
H 6 HOH A 11 611 611 HOH HOH . 
H 6 HOH A 12 612 612 HOH HOH . 
H 6 HOH A 13 613 613 HOH HOH . 
H 6 HOH A 14 614 614 HOH HOH . 
H 6 HOH A 15 615 615 HOH HOH . 
H 6 HOH A 16 616 616 HOH HOH . 
H 6 HOH A 17 617 617 HOH HOH . 
H 6 HOH A 18 618 618 HOH HOH . 
H 6 HOH A 19 619 619 HOH HOH . 
H 6 HOH A 20 620 620 HOH HOH . 
H 6 HOH A 21 621 621 HOH HOH . 
H 6 HOH A 22 622 622 HOH HOH . 
H 6 HOH A 23 623 623 HOH HOH . 
H 6 HOH A 24 624 624 HOH HOH . 
H 6 HOH A 25 625 625 HOH HOH . 
H 6 HOH A 26 626 626 HOH HOH . 
H 6 HOH A 27 627 627 HOH HOH . 
H 6 HOH A 28 628 628 HOH HOH . 
H 6 HOH A 29 629 629 HOH HOH . 
H 6 HOH A 30 630 630 HOH HOH . 
H 6 HOH A 31 631 631 HOH HOH . 
H 6 HOH A 32 632 632 HOH HOH . 
H 6 HOH A 33 633 633 HOH HOH . 
H 6 HOH A 34 634 634 HOH HOH . 
H 6 HOH A 35 635 635 HOH HOH . 
H 6 HOH A 36 636 636 HOH HOH . 
H 6 HOH A 37 637 637 HOH HOH . 
H 6 HOH A 38 638 638 HOH HOH . 
H 6 HOH A 39 639 639 HOH HOH . 
H 6 HOH A 40 640 640 HOH HOH . 
H 6 HOH A 41 641 641 HOH HOH . 
H 6 HOH A 42 642 642 HOH HOH . 
H 6 HOH A 43 643 643 HOH HOH . 
H 6 HOH A 44 644 644 HOH HOH . 
H 6 HOH A 45 645 645 HOH HOH . 
H 6 HOH A 46 646 646 HOH HOH . 
H 6 HOH A 47 647 647 HOH HOH . 
H 6 HOH A 48 648 648 HOH HOH . 
H 6 HOH A 49 649 649 HOH HOH . 
H 6 HOH A 50 650 650 HOH HOH . 
H 6 HOH A 51 651 651 HOH HOH . 
H 6 HOH A 52 652 652 HOH HOH . 
H 6 HOH A 53 653 653 HOH HOH . 
H 6 HOH A 54 654 654 HOH HOH . 
H 6 HOH A 55 655 655 HOH HOH . 
H 6 HOH A 56 656 656 HOH HOH . 
H 6 HOH A 57 657 657 HOH HOH . 
H 6 HOH A 58 658 658 HOH HOH . 
H 6 HOH A 59 659 659 HOH HOH . 
H 6 HOH A 60 660 660 HOH HOH . 
H 6 HOH A 61 661 661 HOH HOH . 
H 6 HOH A 62 662 662 HOH HOH . 
H 6 HOH A 63 663 663 HOH HOH . 
H 6 HOH A 64 664 664 HOH HOH . 
H 6 HOH A 65 665 665 HOH HOH . 
H 6 HOH A 66 666 666 HOH HOH . 
H 6 HOH A 67 667 667 HOH HOH . 
H 6 HOH A 68 668 668 HOH HOH . 
H 6 HOH A 69 669 669 HOH HOH . 
H 6 HOH A 70 670 670 HOH HOH . 
H 6 HOH A 71 671 671 HOH HOH . 
H 6 HOH A 72 672 672 HOH HOH . 
H 6 HOH A 73 673 673 HOH HOH . 
H 6 HOH A 74 674 674 HOH HOH . 
H 6 HOH A 75 675 675 HOH HOH . 
H 6 HOH A 76 676 676 HOH HOH . 
H 6 HOH A 77 677 677 HOH HOH . 
H 6 HOH A 78 678 678 HOH HOH . 
H 6 HOH A 79 679 679 HOH HOH . 
H 6 HOH A 80 680 680 HOH HOH . 
H 6 HOH A 81 681 681 HOH HOH . 
H 6 HOH A 82 682 682 HOH HOH . 
H 6 HOH A 83 683 683 HOH HOH . 
H 6 HOH A 84 684 684 HOH HOH . 
H 6 HOH A 85 685 685 HOH HOH . 
H 6 HOH A 86 686 686 HOH HOH . 
H 6 HOH A 87 687 687 HOH HOH . 
H 6 HOH A 88 688 688 HOH HOH . 
H 6 HOH A 89 689 689 HOH HOH . 
H 6 HOH A 90 690 690 HOH HOH . 
H 6 HOH A 91 691 691 HOH HOH . 
H 6 HOH A 92 692 692 HOH HOH . 
H 6 HOH A 93 693 693 HOH HOH . 
H 6 HOH A 94 694 694 HOH HOH . 
H 6 HOH A 95 695 695 HOH HOH . 
H 6 HOH A 96 696 696 HOH HOH . 
H 6 HOH A 97 697 697 HOH HOH . 
H 6 HOH A 98 698 698 HOH HOH . 
H 6 HOH A 99 699 699 HOH HOH . 
H 6 HOH A 100 700 700 HOH HOH . 
H 6 HOH A 101 701 701 HOH HOH . 
H 6 HOH A 102 702 702 HOH HOH . 
H 6 HOH A 103 703 703 HOH HOH . 
H 6 HOH A 104 704 704 HOH HOH . 
H 6 HOH A 105 705 705 HOH HOH . 
H 6 HOH A 106 706 706 HOH HOH . 
H 6 HOH A 107 707 707 HOH HOH . 
H 6 HOH A 108 708 708 HOH HOH . 
H 6 HOH A 109 709 709 HOH HOH . 
H 6 HOH A 110 710 710 HOH HOH . 
H 6 HOH A 111 711 711 HOH HOH . 
H 6 HOH A 112 712 712 HOH HOH . 
H 6 HOH A 113 713 713 HOH HOH . 
H 6 HOH A 114 714 714 HOH HOH . 
H 6 HOH A 115 715 715 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 76.57 66.497 -35.256 1 28.47 ? C1 NAG 991 A 1 
HETATM 2 C C2 NAG . . . C 3 77.652 65.539 -35.713 1 33.76 ? C2 NAG 991 A 1 
HETATM 3 C C3 NAG . . . C 3 78.711 66.303 -36.62 1 36.17 ? C3 NAG 991 A 1 
HETATM 4 C C4 NAG . . . C 3 78.094 67.013 -37.781 1 36.96 ? C4 NAG 991 A 1 
HETATM 5 C C5 NAG . . . C 3 76.961 67.926 -37.253 1 34.67 ? C5 NAG 991 A 1 
HETATM 6 C C6 NAG . . . C 3 76.071 68.416 -38.441 1 35.55 ? C6 NAG 991 A 1 
HETATM 7 C C7 NAG . . . C 3 78.373 63.659 -34.264 1 32.62 ? C7 NAG 991 A 1 
HETATM 8 C C8 NAG . . . C 3 79.058 63.265 -32.95 1 30.27 ? C8 NAG 991 A 1 
HETATM 9 N N2 NAG . . . C 3 78.279 64.965 -34.512 1 32.48 ? N2 NAG 991 A 1 
HETATM 10 O O3 NAG . . . C 3 79.668 65.391 -37.247 1 39.92 ? O3 NAG 991 A 1 
HETATM 11 O O4 NAG . . . C 3 79.176 67.703 -38.41 1 41.19 ? O4 NAG 991 A 1 
HETATM 12 O O5 NAG . . . C 3 76.072 67.21 -36.39 1 30.28 ? O5 NAG 991 A 1 
HETATM 13 O O6 NAG . . . C 3 75.446 67.355 -39.177 1 40.18 ? O6 NAG 991 A 1 
HETATM 14 O O7 NAG . . . C 3 77.939 62.797 -35.033 1 31.67 ? O7 NAG 991 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#