data_1LPS # _model_server_result.job_id 0DR5Rn3qCLvfZTW0X0Vfgg _model_server_result.datetime_utc '2024-10-24 04:23:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":589}' # _entry.id 1LPS # _exptl.entry_id 1LPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LPS _cell.length_a 65.1 _cell.length_b 97.7 _cell.length_c 176.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 992 NAG 2 n B NAG 2 B 2 NAG ? 994 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 75 A CYS 60 1_555 A SG CYS 112 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 283 A CYS 268 1_555 A SG CYS 292 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A OG SER 224 A SER 209 1_555 F P1 MPC . A MPC 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale2 A ND2 ASN 329 A ASN 314 1_555 C C1 NAG . A NAG 991 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale3 A ND2 ASN 366 A ASN 351 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? metalc ? metalc1 A OD2 ASP 275 A ASP 260 1_555 D CA CA . A CA 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc2 A OD1 ASP 275 A ASP 260 1_555 D CA CA . A CA 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc3 A O GLY 341 A GLY 326 1_555 E CA CA . A CA 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 A O GLY 341 A GLY 326 3_754 E CA CA . A CA 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 D CA CA . A CA 589 1_555 G O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc6 E CA CA . A CA 590 1_555 G O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc7 E CA CA . A CA 590 1_555 G O HOH . A HOH 718 3_754 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc8 E CA CA . A CA 590 1_555 G O HOH . A HOH 756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc9 E CA CA . A CA 590 1_555 G O HOH . A HOH 756 3_754 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LPS _atom_sites.fract_transf_matrix[1][1] 0.015361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 991 991 NAG NAG . D 4 CA A 1 589 589 CA CA . E 4 CA A 1 590 590 CA CA . F 5 MPC A 1 560 560 MPC MPC . G 6 HOH A 1 601 601 HOH HOH . G 6 HOH A 2 602 602 HOH HOH . G 6 HOH A 3 603 603 HOH HOH . G 6 HOH A 4 604 604 HOH HOH . G 6 HOH A 5 605 605 HOH HOH . G 6 HOH A 6 606 606 HOH HOH . G 6 HOH A 7 607 607 HOH HOH . G 6 HOH A 8 608 608 HOH HOH . G 6 HOH A 9 609 609 HOH HOH . G 6 HOH A 10 610 610 HOH HOH . G 6 HOH A 11 611 611 HOH HOH . G 6 HOH A 12 612 612 HOH HOH . G 6 HOH A 13 613 613 HOH HOH . G 6 HOH A 14 614 614 HOH HOH . G 6 HOH A 15 615 615 HOH HOH . G 6 HOH A 16 616 616 HOH HOH . G 6 HOH A 17 617 617 HOH HOH . G 6 HOH A 18 618 618 HOH HOH . G 6 HOH A 19 619 619 HOH HOH . G 6 HOH A 20 620 620 HOH HOH . G 6 HOH A 21 621 621 HOH HOH . G 6 HOH A 22 622 622 HOH HOH . G 6 HOH A 23 623 623 HOH HOH . G 6 HOH A 24 624 624 HOH HOH . G 6 HOH A 25 625 625 HOH HOH . G 6 HOH A 26 626 626 HOH HOH . G 6 HOH A 27 627 627 HOH HOH . G 6 HOH A 28 628 628 HOH HOH . G 6 HOH A 29 629 629 HOH HOH . G 6 HOH A 30 630 630 HOH HOH . G 6 HOH A 31 631 631 HOH HOH . G 6 HOH A 32 632 632 HOH HOH . G 6 HOH A 33 633 633 HOH HOH . G 6 HOH A 34 634 634 HOH HOH . G 6 HOH A 35 635 635 HOH HOH . G 6 HOH A 36 636 636 HOH HOH . G 6 HOH A 37 637 637 HOH HOH . G 6 HOH A 38 638 638 HOH HOH . G 6 HOH A 39 639 639 HOH HOH . G 6 HOH A 40 640 640 HOH HOH . G 6 HOH A 41 641 641 HOH HOH . G 6 HOH A 42 642 642 HOH HOH . G 6 HOH A 43 643 643 HOH HOH . G 6 HOH A 44 644 644 HOH HOH . G 6 HOH A 45 645 645 HOH HOH . G 6 HOH A 46 646 646 HOH HOH . G 6 HOH A 47 647 647 HOH HOH . G 6 HOH A 48 648 648 HOH HOH . G 6 HOH A 49 649 649 HOH HOH . G 6 HOH A 50 650 650 HOH HOH . G 6 HOH A 51 651 651 HOH HOH . G 6 HOH A 52 652 652 HOH HOH . G 6 HOH A 53 653 653 HOH HOH . G 6 HOH A 54 654 654 HOH HOH . G 6 HOH A 55 655 655 HOH HOH . G 6 HOH A 56 656 656 HOH HOH . G 6 HOH A 57 657 657 HOH HOH . G 6 HOH A 58 658 658 HOH HOH . G 6 HOH A 59 659 659 HOH HOH . G 6 HOH A 60 660 660 HOH HOH . G 6 HOH A 61 661 661 HOH HOH . G 6 HOH A 62 662 662 HOH HOH . G 6 HOH A 63 663 663 HOH HOH . G 6 HOH A 64 664 664 HOH HOH . G 6 HOH A 65 665 665 HOH HOH . G 6 HOH A 66 666 666 HOH HOH . G 6 HOH A 67 667 667 HOH HOH . G 6 HOH A 68 668 668 HOH HOH . G 6 HOH A 69 669 669 HOH HOH . G 6 HOH A 70 670 670 HOH HOH . G 6 HOH A 71 671 671 HOH HOH . G 6 HOH A 72 672 672 HOH HOH . G 6 HOH A 73 673 673 HOH HOH . G 6 HOH A 74 674 674 HOH HOH . G 6 HOH A 75 675 675 HOH HOH . G 6 HOH A 76 676 676 HOH HOH . G 6 HOH A 77 677 677 HOH HOH . G 6 HOH A 78 678 678 HOH HOH . G 6 HOH A 79 679 679 HOH HOH . G 6 HOH A 80 681 681 HOH HOH . G 6 HOH A 81 682 682 HOH HOH . G 6 HOH A 82 683 683 HOH HOH . G 6 HOH A 83 684 684 HOH HOH . G 6 HOH A 84 685 685 HOH HOH . G 6 HOH A 85 686 686 HOH HOH . G 6 HOH A 86 687 687 HOH HOH . G 6 HOH A 87 688 688 HOH HOH . G 6 HOH A 88 689 689 HOH HOH . G 6 HOH A 89 690 690 HOH HOH . G 6 HOH A 90 691 691 HOH HOH . G 6 HOH A 91 692 692 HOH HOH . G 6 HOH A 92 693 693 HOH HOH . G 6 HOH A 93 694 694 HOH HOH . G 6 HOH A 94 695 695 HOH HOH . G 6 HOH A 95 696 696 HOH HOH . G 6 HOH A 96 697 697 HOH HOH . G 6 HOH A 97 698 698 HOH HOH . G 6 HOH A 98 699 699 HOH HOH . G 6 HOH A 99 700 700 HOH HOH . G 6 HOH A 100 701 701 HOH HOH . G 6 HOH A 101 702 702 HOH HOH . G 6 HOH A 102 703 703 HOH HOH . G 6 HOH A 103 704 704 HOH HOH . G 6 HOH A 104 705 705 HOH HOH . G 6 HOH A 105 706 706 HOH HOH . G 6 HOH A 106 707 707 HOH HOH . G 6 HOH A 107 708 708 HOH HOH . G 6 HOH A 108 709 709 HOH HOH . G 6 HOH A 109 710 710 HOH HOH . G 6 HOH A 110 711 711 HOH HOH . G 6 HOH A 111 712 712 HOH HOH . G 6 HOH A 112 713 713 HOH HOH . G 6 HOH A 113 714 714 HOH HOH . G 6 HOH A 114 715 715 HOH HOH . G 6 HOH A 115 716 716 HOH HOH . G 6 HOH A 116 717 717 HOH HOH . G 6 HOH A 117 718 718 HOH HOH . G 6 HOH A 118 719 719 HOH HOH . G 6 HOH A 119 720 720 HOH HOH . G 6 HOH A 120 721 721 HOH HOH . G 6 HOH A 121 722 722 HOH HOH . G 6 HOH A 122 723 723 HOH HOH . G 6 HOH A 123 724 724 HOH HOH . G 6 HOH A 124 725 725 HOH HOH . G 6 HOH A 125 726 726 HOH HOH . G 6 HOH A 126 727 727 HOH HOH . G 6 HOH A 127 728 728 HOH HOH . G 6 HOH A 128 729 729 HOH HOH . G 6 HOH A 129 730 730 HOH HOH . G 6 HOH A 130 731 731 HOH HOH . G 6 HOH A 131 732 732 HOH HOH . G 6 HOH A 132 733 733 HOH HOH . G 6 HOH A 133 734 734 HOH HOH . G 6 HOH A 134 735 735 HOH HOH . G 6 HOH A 135 736 736 HOH HOH . G 6 HOH A 136 737 737 HOH HOH . G 6 HOH A 137 738 738 HOH HOH . G 6 HOH A 138 739 739 HOH HOH . G 6 HOH A 139 740 740 HOH HOH . G 6 HOH A 140 741 741 HOH HOH . G 6 HOH A 141 742 742 HOH HOH . G 6 HOH A 142 743 743 HOH HOH . G 6 HOH A 143 744 744 HOH HOH . G 6 HOH A 144 745 745 HOH HOH . G 6 HOH A 145 746 746 HOH HOH . G 6 HOH A 146 747 747 HOH HOH . G 6 HOH A 147 748 748 HOH HOH . G 6 HOH A 148 749 749 HOH HOH . G 6 HOH A 149 750 750 HOH HOH . G 6 HOH A 150 751 751 HOH HOH . G 6 HOH A 151 752 752 HOH HOH . G 6 HOH A 152 753 753 HOH HOH . G 6 HOH A 153 754 754 HOH HOH . G 6 HOH A 154 755 755 HOH HOH . G 6 HOH A 155 756 756 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 68.164 _atom_site.Cartn_y 81.725 _atom_site.Cartn_z -18.555 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 589 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #