data_1LQ8 # _model_server_result.job_id plSaq2hQPro8CygHDOSMRg _model_server_result.datetime_utc '2024-10-12 14:28:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":357}' # _entry.id 1LQ8 # _exptl.entry_id 1LQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.98 _cell.angle_gamma 90 _cell.entry_id 1LQ8 _cell.length_a 55.2 _cell.length_b 244.03 _cell.length_c 66.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LQ8 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 PISA,PQS dimeric 2 author_and_software_defined_assembly 3 PISA,PQS dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,N,T,U 1 1 C,D,K,O,P,Q,V,W 2 1 E,F,X,Y 3 1 G,H,L,M,R,S,Z,AA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 O N N ? 7 P N N ? 7 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NDG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 MAN MAN C1 O1 . O3 HO3 . sing 4 ? 5 3 1 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n I NAG 1 I 1 NAG A 1 NAG 3 n I NDG 2 I 2 NDG A 2 NAG 4 n J NAG 1 J 1 NAG A 3 NAG 4 n J NAG 2 J 2 NAG A 7 NAG 4 n K NAG 1 K 1 NAG C 8 NAG 4 n K NAG 2 K 2 NAG C 9 NAG 5 n L MAN 1 L 1 MAN G 4 MAN 5 n L MAN 2 L 2 MAN G 6 MAN 5 n L MAN 3 L 3 MAN G 5 MAN 3 n M NAG 1 M 1 NAG G 11 NAG 3 n M NDG 2 M 2 NDG G 12 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 220 A ASN 230 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 233 A ASN 243 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 O C1 NAG . C NAG 10 1_555 C ND2 ASN 309 C ASN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale4 C ND2 ASN 220 C ASN 230 1_555 P C1 NAG . C NAG 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 C ND2 ASN 233 C ASN 243 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale6 G ND2 ASN 220 G ASN 230 1_555 R C1 NAG . G NAG 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale7 G ND2 ASN 233 G ASN 243 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale8 I O4 NAG . I NAG 1 1_555 I C1 NDG . I NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale9 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale10 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale11 L O3 MAN . L MAN 1 1_555 L C1 MAN . L MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale12 L O6 MAN . L MAN 1 1_555 L C1 MAN . L MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale13 M O4 NAG . M NAG 1 1_555 M C1 NDG . M NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 272 n n C1 O1 NAG sing 273 n n C1 O5 NAG sing 274 n n C1 H1 NAG sing 275 n n C2 C3 NAG sing 276 n n C2 N2 NAG sing 277 n n C2 H2 NAG sing 278 n n C3 C4 NAG sing 279 n n C3 O3 NAG sing 280 n n C3 H3 NAG sing 281 n n C4 C5 NAG sing 282 n n C4 O4 NAG sing 283 n n C4 H4 NAG sing 284 n n C5 C6 NAG sing 285 n n C5 O5 NAG sing 286 n n C5 H5 NAG sing 287 n n C6 O6 NAG sing 288 n n C6 H61 NAG sing 289 n n C6 H62 NAG sing 290 n n C7 C8 NAG sing 291 n n C7 N2 NAG sing 292 n n C7 O7 NAG doub 293 n n C8 H81 NAG sing 294 n n C8 H82 NAG sing 295 n n C8 H83 NAG sing 296 n n N2 HN2 NAG sing 297 n n O1 HO1 NAG sing 298 n n O3 HO3 NAG sing 299 n n O4 HO4 NAG sing 300 n n O6 HO6 NAG sing 301 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1LQ8 _atom_sites.fract_transf_matrix[1][1] 0.018116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000626 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 6 IPA A 1 901 901 IPA IOH . O 7 NAG C 1 10 10 NAG NAG . P 7 NAG C 1 357 13 NAG NAG . Q 6 IPA C 1 902 902 IPA IOH . R 7 NAG G 1 359 14 NAG NAG . S 6 IPA G 1 903 903 IPA IOH . T 8 HOH A 1 902 1 HOH HOH . T 8 HOH A 2 903 2 HOH HOH . T 8 HOH A 3 904 3 HOH HOH . T 8 HOH A 4 905 4 HOH HOH . T 8 HOH A 5 906 22 HOH HOH . T 8 HOH A 6 907 23 HOH HOH . T 8 HOH A 7 908 24 HOH HOH . T 8 HOH A 8 909 25 HOH HOH . T 8 HOH A 9 910 26 HOH HOH . T 8 HOH A 10 911 27 HOH HOH . T 8 HOH A 11 912 35 HOH HOH . T 8 HOH A 12 913 39 HOH HOH . T 8 HOH A 13 914 41 HOH HOH . T 8 HOH A 14 915 42 HOH HOH . T 8 HOH A 15 916 43 HOH HOH . T 8 HOH A 16 917 44 HOH HOH . T 8 HOH A 17 918 45 HOH HOH . T 8 HOH A 18 919 62 HOH HOH . T 8 HOH A 19 920 63 HOH HOH . T 8 HOH A 20 921 64 HOH HOH . T 8 HOH A 21 922 65 HOH HOH . T 8 HOH A 22 923 66 HOH HOH . T 8 HOH A 23 924 67 HOH HOH . T 8 HOH A 24 925 69 HOH HOH . T 8 HOH A 25 926 78 HOH HOH . T 8 HOH A 26 927 79 HOH HOH . T 8 HOH A 27 928 80 HOH HOH . T 8 HOH A 28 929 81 HOH HOH . U 8 HOH B 1 36 36 HOH HOH . U 8 HOH B 2 46 46 HOH HOH . U 8 HOH B 3 47 47 HOH HOH . U 8 HOH B 4 82 82 HOH HOH . V 8 HOH C 1 903 5 HOH HOH . V 8 HOH C 2 904 6 HOH HOH . V 8 HOH C 3 905 7 HOH HOH . V 8 HOH C 4 906 8 HOH HOH . V 8 HOH C 5 907 9 HOH HOH . V 8 HOH C 6 908 11 HOH HOH . V 8 HOH C 7 909 12 HOH HOH . V 8 HOH C 8 910 28 HOH HOH . V 8 HOH C 9 911 48 HOH HOH . V 8 HOH C 10 912 49 HOH HOH . V 8 HOH C 11 913 50 HOH HOH . V 8 HOH C 12 914 52 HOH HOH . V 8 HOH C 13 915 68 HOH HOH . V 8 HOH C 14 916 70 HOH HOH . V 8 HOH C 15 917 83 HOH HOH . V 8 HOH C 16 918 84 HOH HOH . V 8 HOH C 17 919 85 HOH HOH . V 8 HOH C 18 920 86 HOH HOH . W 8 HOH D 1 10 10 HOH HOH . W 8 HOH D 2 13 13 HOH HOH . W 8 HOH D 3 14 14 HOH HOH . W 8 HOH D 4 15 15 HOH HOH . W 8 HOH D 5 40 40 HOH HOH . W 8 HOH D 6 51 51 HOH HOH . W 8 HOH D 7 53 53 HOH HOH . W 8 HOH D 8 54 54 HOH HOH . W 8 HOH D 9 55 55 HOH HOH . W 8 HOH D 10 71 71 HOH HOH . X 8 HOH E 1 357 16 HOH HOH . X 8 HOH E 2 358 17 HOH HOH . X 8 HOH E 3 359 18 HOH HOH . X 8 HOH E 4 360 19 HOH HOH . X 8 HOH E 5 361 20 HOH HOH . X 8 HOH E 6 362 29 HOH HOH . X 8 HOH E 7 363 56 HOH HOH . X 8 HOH E 8 364 57 HOH HOH . X 8 HOH E 9 365 58 HOH HOH . X 8 HOH E 10 366 72 HOH HOH . X 8 HOH E 11 367 77 HOH HOH . X 8 HOH E 12 368 87 HOH HOH . X 8 HOH E 13 369 88 HOH HOH . X 8 HOH E 14 370 89 HOH HOH . X 8 HOH E 15 371 90 HOH HOH . Y 8 HOH F 1 59 59 HOH HOH . Z 8 HOH G 1 904 21 HOH HOH . Z 8 HOH G 2 905 30 HOH HOH . Z 8 HOH G 3 906 31 HOH HOH . Z 8 HOH G 4 907 32 HOH HOH . Z 8 HOH G 5 908 33 HOH HOH . Z 8 HOH G 6 909 34 HOH HOH . Z 8 HOH G 7 910 37 HOH HOH . Z 8 HOH G 8 911 38 HOH HOH . Z 8 HOH G 9 912 60 HOH HOH . Z 8 HOH G 10 913 61 HOH HOH . Z 8 HOH G 11 914 73 HOH HOH . Z 8 HOH G 12 915 74 HOH HOH . Z 8 HOH G 13 916 75 HOH HOH . Z 8 HOH G 14 917 91 HOH HOH . Z 8 HOH G 15 918 92 HOH HOH . Z 8 HOH G 16 919 93 HOH HOH . Z 8 HOH G 17 920 94 HOH HOH . Z 8 HOH G 18 921 95 HOH HOH . Z 8 HOH G 19 922 96 HOH HOH . Z 8 HOH G 20 923 97 HOH HOH . Z 8 HOH G 21 924 98 HOH HOH . AA 8 HOH H 1 76 76 HOH HOH . AA 8 HOH H 2 99 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 7 -15.98 46.903 42.083 1 100.72 ? C1 NAG 357 C 1 HETATM 2 C C2 NAG . . . P 7 -16.665 48.168 41.504 1 103.95 ? C2 NAG 357 C 1 HETATM 3 C C3 NAG . . . P 7 -17.556 48.827 42.568 1 105.18 ? C3 NAG 357 C 1 HETATM 4 C C4 NAG . . . P 7 -18.037 47.774 43.579 1 105.04 ? C4 NAG 357 C 1 HETATM 5 C C5 NAG . . . P 7 -16.833 47.147 44.325 1 104.32 ? C5 NAG 357 C 1 HETATM 6 C C6 NAG . . . P 7 -17.099 45.731 44.824 1 103.04 ? C6 NAG 357 C 1 HETATM 7 C C7 NAG . . . P 7 -16.038 50.016 40.076 1 107.24 ? C7 NAG 357 C 1 HETATM 8 C C8 NAG . . . P 7 -16.203 51.467 40.507 1 106.62 ? C8 NAG 357 C 1 HETATM 9 N N2 NAG . . . P 7 -15.69 49.129 41.011 1 106.44 ? N2 NAG 357 C 1 HETATM 10 O O3 NAG . . . P 7 -18.674 49.441 41.94 1 105.94 ? O3 NAG 357 C 1 HETATM 11 O O4 NAG . . . P 7 -18.93 48.371 44.51 1 105.45 ? O4 NAG 357 C 1 HETATM 12 O O5 NAG . . . P 7 -15.652 47.092 43.471 1 103.08 ? O5 NAG 357 C 1 HETATM 13 O O6 NAG . . . P 7 -18.007 45.041 43.976 1 101.35 ? O6 NAG 357 C 1 HETATM 14 O O7 NAG . . . P 7 -16.233 49.705 38.898 1 107.51 ? O7 NAG 357 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #