data_1LQS # _model_server_result.job_id yE75UNvSlffDlH1ZtnmGTw _model_server_result.datetime_utc '2024-11-09 02:41:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 1LQS # _exptl.entry_id 1LQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.49 _cell.angle_gamma 90 _cell.entry_id 1LQS _cell.length_a 114.29 _cell.length_b 104.68 _cell.length_c 91.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 R CYS 35 1_555 A SG CYS 54 R CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 181 R CYS 181 1_555 A SG CYS 202 R CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 35 S CYS 35 1_555 B SG CYS 54 S CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 181 S CYS 181 1_555 B SG CYS 202 S CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 19 L CYS 12 1_555 C SG CYS 109 L CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 60 L CYS 59 1_555 D SG CYS 60 M CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 C SG CYS 63 L CYS 62 1_555 C SG CYS 114 L CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 D SG CYS 19 M CYS 12 1_555 D SG CYS 109 M CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 D SG CYS 63 M CYS 62 1_555 D SG CYS 114 M CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1LQS _atom_sites.fract_transf_matrix[1][1] 0.00875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG L 1 201 1 NAG NAG . F 3 NAG M 1 202 2 NAG NAG . G 4 HOH R 1 215 11 HOH TIP . G 4 HOH R 2 216 18 HOH TIP . G 4 HOH R 3 217 20 HOH TIP . G 4 HOH R 4 218 21 HOH TIP . G 4 HOH R 5 219 22 HOH TIP . G 4 HOH R 6 220 29 HOH TIP . G 4 HOH R 7 221 52 HOH TIP . G 4 HOH R 8 222 53 HOH TIP . G 4 HOH R 9 223 54 HOH TIP . G 4 HOH R 10 224 55 HOH TIP . G 4 HOH R 11 225 67 HOH TIP . G 4 HOH R 12 226 82 HOH TIP . G 4 HOH R 13 227 95 HOH TIP . G 4 HOH R 14 228 107 HOH TIP . G 4 HOH R 15 229 136 HOH TIP . G 4 HOH R 16 230 141 HOH TIP . H 4 HOH S 1 215 12 HOH TIP . H 4 HOH S 2 216 23 HOH TIP . H 4 HOH S 3 217 28 HOH TIP . H 4 HOH S 4 218 65 HOH TIP . H 4 HOH S 5 219 69 HOH TIP . H 4 HOH S 6 220 83 HOH TIP . H 4 HOH S 7 221 88 HOH TIP . H 4 HOH S 8 222 91 HOH TIP . H 4 HOH S 9 223 111 HOH TIP . H 4 HOH S 10 224 128 HOH TIP . I 4 HOH L 1 202 4 HOH TIP . I 4 HOH L 2 203 9 HOH TIP . I 4 HOH L 3 204 10 HOH TIP . I 4 HOH L 4 205 33 HOH TIP . I 4 HOH L 5 206 42 HOH TIP . I 4 HOH L 6 207 44 HOH TIP . I 4 HOH L 7 208 47 HOH TIP . I 4 HOH L 8 209 56 HOH TIP . I 4 HOH L 9 210 81 HOH TIP . I 4 HOH L 10 211 87 HOH TIP . I 4 HOH L 11 212 97 HOH TIP . I 4 HOH L 12 213 98 HOH TIP . I 4 HOH L 13 214 115 HOH TIP . J 4 HOH M 1 203 1 HOH TIP . J 4 HOH M 2 204 3 HOH TIP . J 4 HOH M 3 205 7 HOH TIP . J 4 HOH M 4 206 8 HOH TIP . J 4 HOH M 5 207 36 HOH TIP . J 4 HOH M 6 208 70 HOH TIP . J 4 HOH M 7 209 74 HOH TIP . J 4 HOH M 8 210 104 HOH TIP . J 4 HOH M 9 211 130 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -5.783 15.381 -13.994 1 64.2 ? C1 NAG 201 L 1 HETATM 2 C C2 NAG . . . E 3 -5.928 16.915 -14.287 1 69.91 ? C2 NAG 201 L 1 HETATM 3 C C3 NAG . . . E 3 -4.556 17.338 -14.905 1 69.29 ? C3 NAG 201 L 1 HETATM 4 C C4 NAG . . . E 3 -3.466 17.088 -13.834 1 73.88 ? C4 NAG 201 L 1 HETATM 5 C C5 NAG . . . E 3 -3.449 15.529 -13.492 1 70.19 ? C5 NAG 201 L 1 HETATM 6 C C6 NAG . . . E 3 -2.444 15.112 -12.495 1 67.39 ? C6 NAG 201 L 1 HETATM 7 C C7 NAG . . . E 3 -8.047 17.905 -15.175 1 70.67 ? C7 NAG 201 L 1 HETATM 8 C C8 NAG . . . E 3 -8.923 17.982 -16.338 1 58.14 ? C8 NAG 201 L 1 HETATM 9 N N2 NAG . . . E 3 -6.932 17.121 -15.329 1 69.96 ? N2 NAG 201 L 1 HETATM 10 O O3 NAG . . . E 3 -4.61 18.744 -15.213 1 78.59 ? O3 NAG 201 L 1 HETATM 11 O O4 NAG . . . E 3 -2.179 17.46 -14.379 1 69.54 ? O4 NAG 201 L 1 HETATM 12 O O5 NAG . . . E 3 -4.808 15.202 -12.969 1 64.27 ? O5 NAG 201 L 1 HETATM 13 O O6 NAG . . . E 3 -1.185 14.937 -13.093 1 66.1 ? O6 NAG 201 L 1 HETATM 14 O O7 NAG . . . E 3 -8.291 18.477 -14.196 1 74.66 ? O7 NAG 201 L 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #