data_1LR6 # _model_server_result.job_id 2YKvZ79y8CrwK1L4D9zHlQ _model_server_result.datetime_utc '2025-03-06 06:44:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 1LR6 # _exptl.entry_id 1LR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.7 _cell.angle_gamma 90 _cell.entry_id 1LR6 _cell.length_a 69.404 _cell.length_b 40.441 _cell.length_c 39.196 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 37 A HIS 39 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 A NE2 HIS 61 A HIS 63 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1LR6 _atom_sites.fract_transf_matrix[1][1] 0.014408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005735 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 HOH A 1 202 202 HOH HOH . C 3 HOH A 2 203 203 HOH HOH . C 3 HOH A 3 204 204 HOH HOH . C 3 HOH A 4 205 205 HOH HOH . C 3 HOH A 5 206 206 HOH HOH . C 3 HOH A 6 207 207 HOH HOH . C 3 HOH A 7 208 208 HOH HOH . C 3 HOH A 8 209 209 HOH HOH . C 3 HOH A 9 210 210 HOH HOH . C 3 HOH A 10 211 211 HOH HOH . C 3 HOH A 11 212 212 HOH HOH . C 3 HOH A 12 213 213 HOH HOH . C 3 HOH A 13 214 214 HOH HOH . C 3 HOH A 14 215 215 HOH HOH . C 3 HOH A 15 216 216 HOH HOH . C 3 HOH A 16 217 217 HOH HOH . C 3 HOH A 17 218 218 HOH HOH . C 3 HOH A 18 219 219 HOH HOH . C 3 HOH A 19 220 220 HOH HOH . C 3 HOH A 20 221 221 HOH HOH . C 3 HOH A 21 222 222 HOH HOH . C 3 HOH A 22 223 223 HOH HOH . C 3 HOH A 23 224 224 HOH HOH . C 3 HOH A 24 225 225 HOH HOH . C 3 HOH A 25 226 226 HOH HOH . C 3 HOH A 26 227 227 HOH HOH . C 3 HOH A 27 228 228 HOH HOH . C 3 HOH A 28 229 229 HOH HOH . C 3 HOH A 29 230 230 HOH HOH . C 3 HOH A 30 231 231 HOH HOH . C 3 HOH A 31 232 232 HOH HOH . C 3 HOH A 32 233 233 HOH HOH . C 3 HOH A 33 234 234 HOH HOH . C 3 HOH A 34 235 235 HOH HOH . C 3 HOH A 35 236 236 HOH HOH . C 3 HOH A 36 237 237 HOH HOH . C 3 HOH A 37 238 238 HOH HOH . C 3 HOH A 38 239 239 HOH HOH . C 3 HOH A 39 240 240 HOH HOH . C 3 HOH A 40 241 241 HOH HOH . C 3 HOH A 41 242 242 HOH HOH . C 3 HOH A 42 243 243 HOH HOH . C 3 HOH A 43 244 244 HOH HOH . C 3 HOH A 44 245 245 HOH HOH . C 3 HOH A 45 246 246 HOH HOH . C 3 HOH A 46 247 247 HOH HOH . C 3 HOH A 47 248 248 HOH HOH . C 3 HOH A 48 249 249 HOH HOH . C 3 HOH A 49 250 250 HOH HOH . C 3 HOH A 50 251 251 HOH HOH . C 3 HOH A 51 252 252 HOH HOH . C 3 HOH A 52 253 253 HOH HOH . C 3 HOH A 53 254 254 HOH HOH . C 3 HOH A 54 255 255 HOH HOH . C 3 HOH A 55 256 256 HOH HOH . C 3 HOH A 56 257 257 HOH HOH . C 3 HOH A 57 258 258 HOH HOH . C 3 HOH A 58 259 259 HOH HOH . C 3 HOH A 59 260 260 HOH HOH . C 3 HOH A 60 261 261 HOH HOH . C 3 HOH A 61 262 262 HOH HOH . C 3 HOH A 62 263 263 HOH HOH . C 3 HOH A 63 264 264 HOH HOH . C 3 HOH A 64 265 265 HOH HOH . C 3 HOH A 65 266 266 HOH HOH . C 3 HOH A 66 267 267 HOH HOH . C 3 HOH A 67 268 268 HOH HOH . C 3 HOH A 68 269 269 HOH HOH . C 3 HOH A 69 270 270 HOH HOH . C 3 HOH A 70 271 271 HOH HOH . C 3 HOH A 71 272 272 HOH HOH . C 3 HOH A 72 273 273 HOH HOH . C 3 HOH A 73 274 274 HOH HOH . C 3 HOH A 74 275 275 HOH HOH . C 3 HOH A 75 276 276 HOH HOH . C 3 HOH A 76 277 277 HOH HOH . C 3 HOH A 77 278 278 HOH HOH . C 3 HOH A 78 279 279 HOH HOH . C 3 HOH A 79 280 280 HOH HOH . C 3 HOH A 80 281 281 HOH HOH . C 3 HOH A 81 282 282 HOH HOH . C 3 HOH A 82 283 283 HOH HOH . C 3 HOH A 83 284 284 HOH HOH . C 3 HOH A 84 285 285 HOH HOH . C 3 HOH A 85 286 286 HOH HOH . C 3 HOH A 86 287 287 HOH HOH . C 3 HOH A 87 288 288 HOH HOH . C 3 HOH A 88 289 289 HOH HOH . C 3 HOH A 89 290 290 HOH HOH . C 3 HOH A 90 291 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 9.942 2.815 -5.528 1 18.96 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 13.884 4.006 -2.962 1 19.01 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 12.225 1.28 0.671 1 18.25 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 8.14 0.37 -1.751 1 21.58 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 11.207 3.298 -5.165 1 21.32 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 12.105 4.001 -6.055 1 20.47 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 13.169 4.366 -5.321 1 20.83 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 12.975 3.843 -3.993 1 17.63 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 14.339 5.216 -5.802 1 20.38 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 11.966 4.255 -7.55 1 24.83 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 12.091 3.008 -8.407 1 22.93 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 13.397 2.286 -8.184 1 24.11 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 14.46 2.916 -8.362 1 24.55 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 13.363 1.088 -7.833 1 25.13 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 13.733 3.395 -1.727 1 20.99 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 14.731 3.453 -0.682 1 19.83 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 14.308 2.622 0.32 1 20.95 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 13.02 2.093 -0.112 1 19.41 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 16 4.299 -0.71 1 22.57 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 14.995 2.217 1.469 1 21.31 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 15.894 2.975 2.213 1 23.74 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 10.974 0.786 0.326 1 19.59 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 10.225 -0.123 1.153 1 21.44 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 9.058 -0.399 0.491 1 21.71 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 9.127 0.365 -0.759 1 20.5 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 10.715 -0.667 2.505 1 21.81 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 8.001 -1.266 0.816 1 24.06 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 7.725 -1.913 2.028 1 28.99 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 8.281 0.996 -2.989 1 22.4 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 7.258 1.043 -4.034 1 21.66 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 7.775 1.688 -5.085 1 25.14 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 9.12 2.067 -4.708 1 21.15 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 5.848 0.494 -3.989 1 25.96 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 7.05 1.949 -6.414 1 28.19 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 7.276 0.808 -7.389 1 37.47 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 6.383 0.89 -8.617 1 42.53 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 6.521 0.023 -9.507 1 45.3 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 5.542 1.813 -8.69 1 44.77 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 11.773 3.163 -3.898 1 19.28 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 12.674 2.556 -1.377 1 18.79 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 10.324 1.053 -0.863 1 20.56 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 9.424 1.662 -3.406 1 18.33 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 11.038 2.125 -2.395 1 21.25 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #