data_1LRM # _model_server_result.job_id HhJc3bMjl3eT-ZUDIVjLtg _model_server_result.datetime_utc '2024-11-28 09:01:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lrm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":429}' # _entry.id 1LRM # _exptl.entry_id 1LRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.231 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7,8-DIHYDROBIOPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LRM _cell.length_a 66.588 _cell.length_b 108.117 _cell.length_c 124.168 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 62.084 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 183 A HIS 285 1_555 B FE FE . A FE 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A NE2 HIS 188 A HIS 290 1_555 B FE FE . A FE 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc3 A OE2 GLU 228 A GLU 330 1_555 B FE FE . A FE 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 B FE FE . A FE 428 1_555 D O HOH . A HOH 1143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 B FE FE . A FE 428 1_555 D O HOH . A HOH 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc6 B FE FE . A FE 428 1_555 D O HOH . A HOH 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'C9 H13 N5 O3' _chem_comp.formula_weight 239.231 _chem_comp.id HBI _chem_comp.mon_nstd_flag . _chem_comp.name 7,8-DIHYDROBIOPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HBI doub 129 n y N1 C8A HBI sing 130 n y N2 C2 HBI sing 131 n n N2 HN21 HBI sing 132 n n N2 HN22 HBI sing 133 n n C2 N3 HBI sing 134 n y N3 C4 HBI sing 135 n y N3 H3 HBI sing 136 n n C4 O4 HBI doub 137 n n C4 C4A HBI sing 138 n y C4A C8A HBI doub 139 n y C4A N5 HBI sing 140 n n C8A N8 HBI sing 141 n n N8 C7 HBI sing 142 n n N8 H8 HBI sing 143 n n C7 C6 HBI sing 144 n n C7 H71 HBI sing 145 n n C7 H72 HBI sing 146 n n C6 N5 HBI doub 147 n n C6 C9 HBI sing 148 n n C9 O9 HBI sing 149 n n C9 C10 HBI sing 150 n n C9 H9 HBI sing 151 n n O9 HO9 HBI sing 152 n n C10 O10 HBI sing 153 n n C10 C11 HBI sing 154 n n C10 H10 HBI sing 155 n n O10 HO1 HBI sing 156 n n C11 H111 HBI sing 157 n n C11 H112 HBI sing 158 n n C11 H113 HBI sing 159 n n # _atom_sites.entry_id 1LRM _atom_sites.fract_transf_matrix[1][1] 0.015018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 428 425 FE FE . C 3 HBI A 1 429 426 HBI HBI . D 4 HOH A 1 1001 1001 HOH HOH . D 4 HOH A 2 1002 1002 HOH HOH . D 4 HOH A 3 1003 1003 HOH HOH . D 4 HOH A 4 1004 1004 HOH HOH . D 4 HOH A 5 1005 1005 HOH HOH . D 4 HOH A 6 1006 1006 HOH HOH . D 4 HOH A 7 1007 1007 HOH HOH . D 4 HOH A 8 1008 1008 HOH HOH . D 4 HOH A 9 1009 1009 HOH HOH . D 4 HOH A 10 1010 1010 HOH HOH . D 4 HOH A 11 1011 1011 HOH HOH . D 4 HOH A 12 1012 1012 HOH HOH . D 4 HOH A 13 1013 1013 HOH HOH . D 4 HOH A 14 1014 1014 HOH HOH . D 4 HOH A 15 1015 1015 HOH HOH . D 4 HOH A 16 1016 1016 HOH HOH . D 4 HOH A 17 1017 1017 HOH HOH . D 4 HOH A 18 1018 1018 HOH HOH . D 4 HOH A 19 1019 1019 HOH HOH . D 4 HOH A 20 1020 1020 HOH HOH . D 4 HOH A 21 1021 1021 HOH HOH . D 4 HOH A 22 1022 1022 HOH HOH . D 4 HOH A 23 1023 1023 HOH HOH . D 4 HOH A 24 1024 1024 HOH HOH . D 4 HOH A 25 1025 1025 HOH HOH . D 4 HOH A 26 1026 1026 HOH HOH . D 4 HOH A 27 1027 1027 HOH HOH . D 4 HOH A 28 1028 1028 HOH HOH . D 4 HOH A 29 1029 1029 HOH HOH . D 4 HOH A 30 1030 1030 HOH HOH . D 4 HOH A 31 1031 1031 HOH HOH . D 4 HOH A 32 1032 1032 HOH HOH . D 4 HOH A 33 1033 1033 HOH HOH . D 4 HOH A 34 1034 1034 HOH HOH . D 4 HOH A 35 1035 1035 HOH HOH . D 4 HOH A 36 1036 1036 HOH HOH . D 4 HOH A 37 1037 1037 HOH HOH . D 4 HOH A 38 1038 1038 HOH HOH . D 4 HOH A 39 1039 1039 HOH HOH . D 4 HOH A 40 1040 1040 HOH HOH . D 4 HOH A 41 1041 1041 HOH HOH . D 4 HOH A 42 1042 1042 HOH HOH . D 4 HOH A 43 1043 1043 HOH HOH . D 4 HOH A 44 1044 1044 HOH HOH . D 4 HOH A 45 1045 1045 HOH HOH . D 4 HOH A 46 1046 1046 HOH HOH . D 4 HOH A 47 1047 1047 HOH HOH . D 4 HOH A 48 1048 1048 HOH HOH . D 4 HOH A 49 1049 1049 HOH HOH . D 4 HOH A 50 1050 1050 HOH HOH . D 4 HOH A 51 1051 1051 HOH HOH . D 4 HOH A 52 1052 1052 HOH HOH . D 4 HOH A 53 1053 1053 HOH HOH . D 4 HOH A 54 1054 1054 HOH HOH . D 4 HOH A 55 1055 1055 HOH HOH . D 4 HOH A 56 1056 1056 HOH HOH . D 4 HOH A 57 1057 1057 HOH HOH . D 4 HOH A 58 1058 1058 HOH HOH . D 4 HOH A 59 1059 1059 HOH HOH . D 4 HOH A 60 1060 1060 HOH HOH . D 4 HOH A 61 1061 1061 HOH HOH . D 4 HOH A 62 1062 1062 HOH HOH . D 4 HOH A 63 1063 1063 HOH HOH . D 4 HOH A 64 1064 1064 HOH HOH . D 4 HOH A 65 1065 1065 HOH HOH . D 4 HOH A 66 1066 1066 HOH HOH . D 4 HOH A 67 1067 1067 HOH HOH . D 4 HOH A 68 1068 1068 HOH HOH . D 4 HOH A 69 1069 1069 HOH HOH . D 4 HOH A 70 1070 1070 HOH HOH . D 4 HOH A 71 1071 1071 HOH HOH . D 4 HOH A 72 1072 1072 HOH HOH . D 4 HOH A 73 1073 1073 HOH HOH . D 4 HOH A 74 1074 1074 HOH HOH . D 4 HOH A 75 1075 1075 HOH HOH . D 4 HOH A 76 1076 1076 HOH HOH . D 4 HOH A 77 1077 1077 HOH HOH . D 4 HOH A 78 1078 1078 HOH HOH . D 4 HOH A 79 1079 1079 HOH HOH . D 4 HOH A 80 1080 1080 HOH HOH . D 4 HOH A 81 1081 1081 HOH HOH . D 4 HOH A 82 1082 1082 HOH HOH . D 4 HOH A 83 1083 1083 HOH HOH . D 4 HOH A 84 1084 1084 HOH HOH . D 4 HOH A 85 1085 1085 HOH HOH . D 4 HOH A 86 1086 1086 HOH HOH . D 4 HOH A 87 1087 1087 HOH HOH . D 4 HOH A 88 1088 1088 HOH HOH . D 4 HOH A 89 1089 1089 HOH HOH . D 4 HOH A 90 1090 1090 HOH HOH . D 4 HOH A 91 1091 1091 HOH HOH . D 4 HOH A 92 1092 1092 HOH HOH . D 4 HOH A 93 1093 1093 HOH HOH . D 4 HOH A 94 1094 1094 HOH HOH . D 4 HOH A 95 1095 1095 HOH HOH . D 4 HOH A 96 1096 1096 HOH HOH . D 4 HOH A 97 1097 1097 HOH HOH . D 4 HOH A 98 1098 1098 HOH HOH . D 4 HOH A 99 1099 1099 HOH HOH . D 4 HOH A 100 1100 1100 HOH HOH . D 4 HOH A 101 1101 1101 HOH HOH . D 4 HOH A 102 1102 1102 HOH HOH . D 4 HOH A 103 1103 1103 HOH HOH . D 4 HOH A 104 1104 1104 HOH HOH . D 4 HOH A 105 1105 1105 HOH HOH . D 4 HOH A 106 1106 1106 HOH HOH . D 4 HOH A 107 1107 1107 HOH HOH . D 4 HOH A 108 1108 1108 HOH HOH . D 4 HOH A 109 1109 1109 HOH HOH . D 4 HOH A 110 1110 1110 HOH HOH . D 4 HOH A 111 1111 1111 HOH HOH . D 4 HOH A 112 1112 1112 HOH HOH . D 4 HOH A 113 1113 1113 HOH HOH . D 4 HOH A 114 1114 1114 HOH HOH . D 4 HOH A 115 1115 1115 HOH HOH . D 4 HOH A 116 1116 1116 HOH HOH . D 4 HOH A 117 1117 1117 HOH HOH . D 4 HOH A 118 1118 1118 HOH HOH . D 4 HOH A 119 1119 1119 HOH HOH . D 4 HOH A 120 1120 1120 HOH HOH . D 4 HOH A 121 1121 1121 HOH HOH . D 4 HOH A 122 1122 1122 HOH HOH . D 4 HOH A 123 1123 1123 HOH HOH . D 4 HOH A 124 1124 1124 HOH HOH . D 4 HOH A 125 1125 1125 HOH HOH . D 4 HOH A 126 1126 1126 HOH HOH . D 4 HOH A 127 1127 1127 HOH HOH . D 4 HOH A 128 1128 1128 HOH HOH . D 4 HOH A 129 1129 1129 HOH HOH . D 4 HOH A 130 1130 1130 HOH HOH . D 4 HOH A 131 1131 1131 HOH HOH . D 4 HOH A 132 1132 1132 HOH HOH . D 4 HOH A 133 1133 1133 HOH HOH . D 4 HOH A 134 1134 1134 HOH HOH . D 4 HOH A 135 1135 1135 HOH HOH . D 4 HOH A 136 1136 1136 HOH HOH . D 4 HOH A 137 1137 1137 HOH HOH . D 4 HOH A 138 1138 1138 HOH HOH . D 4 HOH A 139 1139 1139 HOH HOH . D 4 HOH A 140 1140 1140 HOH HOH . D 4 HOH A 141 1141 1141 HOH HOH . D 4 HOH A 142 1142 1142 HOH HOH . D 4 HOH A 143 1143 1143 HOH HOH . D 4 HOH A 144 1144 1144 HOH HOH . D 4 HOH A 145 1145 1145 HOH HOH . D 4 HOH A 146 1146 1146 HOH HOH . D 4 HOH A 147 1147 1147 HOH HOH . D 4 HOH A 148 1148 1148 HOH HOH . D 4 HOH A 149 1149 1149 HOH HOH . D 4 HOH A 150 1150 1150 HOH HOH . D 4 HOH A 151 1151 1151 HOH HOH . D 4 HOH A 152 1152 1152 HOH HOH . D 4 HOH A 153 1153 1153 HOH HOH . D 4 HOH A 154 1154 1154 HOH HOH . D 4 HOH A 155 1155 1155 HOH HOH . D 4 HOH A 156 1156 1156 HOH HOH . D 4 HOH A 157 1157 1157 HOH HOH . D 4 HOH A 158 1158 1158 HOH HOH . D 4 HOH A 159 1159 1159 HOH HOH . D 4 HOH A 160 1160 1160 HOH HOH . D 4 HOH A 161 1161 1161 HOH HOH . D 4 HOH A 162 1162 1162 HOH HOH . D 4 HOH A 163 1163 1163 HOH HOH . D 4 HOH A 164 1164 1164 HOH HOH . D 4 HOH A 165 1165 1165 HOH HOH . D 4 HOH A 166 1166 1166 HOH HOH . D 4 HOH A 167 1167 1167 HOH HOH . D 4 HOH A 168 1168 1168 HOH HOH . D 4 HOH A 169 1169 1169 HOH HOH . D 4 HOH A 170 1170 1170 HOH HOH . D 4 HOH A 171 1171 1171 HOH HOH . D 4 HOH A 172 1172 1172 HOH HOH . D 4 HOH A 173 1173 1173 HOH HOH . D 4 HOH A 174 1174 1174 HOH HOH . D 4 HOH A 175 1175 1175 HOH HOH . D 4 HOH A 176 1176 1176 HOH HOH . D 4 HOH A 177 1177 1177 HOH HOH . D 4 HOH A 178 1178 1178 HOH HOH . D 4 HOH A 179 1179 1179 HOH HOH . D 4 HOH A 180 1180 1180 HOH HOH . D 4 HOH A 181 1181 1181 HOH HOH . D 4 HOH A 182 1182 1182 HOH HOH . D 4 HOH A 183 1183 1183 HOH HOH . D 4 HOH A 184 1184 1184 HOH HOH . D 4 HOH A 185 1185 1185 HOH HOH . D 4 HOH A 186 1186 1186 HOH HOH . D 4 HOH A 187 1187 1187 HOH HOH . D 4 HOH A 188 1188 1188 HOH HOH . D 4 HOH A 189 1189 1189 HOH HOH . D 4 HOH A 190 1190 1190 HOH HOH . D 4 HOH A 191 1191 1191 HOH HOH . D 4 HOH A 192 1192 1192 HOH HOH . D 4 HOH A 193 1193 1193 HOH HOH . D 4 HOH A 194 1194 1194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HBI . . . C 3 -7.511 22.362 7.521 1 39.04 ? N1 HBI 429 A 1 HETATM 2 N N2 HBI . . . C 3 -6.527 20.419 8.179 1 39.87 ? N2 HBI 429 A 1 HETATM 3 C C2 HBI . . . C 3 -6.364 21.688 7.709 1 39.99 ? C2 HBI 429 A 1 HETATM 4 N N3 HBI . . . C 3 -5.106 22.17 7.461 1 38.87 ? N3 HBI 429 A 1 HETATM 5 C C4 HBI . . . C 3 -4.952 23.458 6.986 1 40.54 ? C4 HBI 429 A 1 HETATM 6 O O4 HBI . . . C 3 -3.654 23.85 6.773 1 40.04 ? O4 HBI 429 A 1 HETATM 7 C C4A HBI . . . C 3 -6.16 24.349 6.723 1 40.37 ? C4A HBI 429 A 1 HETATM 8 C C8A HBI . . . C 3 -7.466 23.647 7.049 1 39.63 ? C8A HBI 429 A 1 HETATM 9 N N8 HBI . . . C 3 -8.764 24.344 6.869 1 39.55 ? N8 HBI 429 A 1 HETATM 10 C C7 HBI . . . C 3 -8.767 25.791 6.332 1 41.07 ? C7 HBI 429 A 1 HETATM 11 C C6 HBI . . . C 3 -7.392 26.488 5.994 1 43.01 ? C6 HBI 429 A 1 HETATM 12 N N5 HBI . . . C 3 -6.2 25.776 6.195 1 40.79 ? N5 HBI 429 A 1 HETATM 13 C C9 HBI . . . C 3 -7.418 27.981 5.427 1 44.39 ? C9 HBI 429 A 1 HETATM 14 O O9 HBI . . . C 3 -8.494 28.077 4.505 1 47.18 ? O9 HBI 429 A 1 HETATM 15 C C10 HBI . . . C 3 -7.522 29.112 6.604 1 43.62 ? C10 HBI 429 A 1 HETATM 16 O O10 HBI . . . C 3 -8.768 28.966 7.426 1 44.72 ? O10 HBI 429 A 1 HETATM 17 C C11 HBI . . . C 3 -6.3 29.037 7.6 1 43.05 ? C11 HBI 429 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #