data_1LS6 # _model_server_result.job_id fhXCVYvD3CKPttsYcvAgQA _model_server_result.datetime_utc '2024-11-23 20:12:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ls6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 1LS6 # _exptl.entry_id 1LS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LS6 _cell.length_a 72.8 _cell.length_b 124.01 _cell.length_c 44.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 1LS6 _atom_sites.fract_transf_matrix[1][1] 0.013736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3P A 1 2001 2001 A3P PAP . C 3 NPO A 1 3001 3001 NPO NPO . D 3 NPO A 1 4001 4001 NPO NPO . E 4 HOH A 1 1001 1001 HOH HOH . E 4 HOH A 2 1002 1002 HOH HOH . E 4 HOH A 3 1003 1003 HOH HOH . E 4 HOH A 4 1004 1004 HOH HOH . E 4 HOH A 5 1005 1005 HOH HOH . E 4 HOH A 6 1006 1006 HOH HOH . E 4 HOH A 7 1007 1007 HOH HOH . E 4 HOH A 8 1008 1008 HOH HOH . E 4 HOH A 9 1009 1009 HOH HOH . E 4 HOH A 10 1010 1010 HOH HOH . E 4 HOH A 11 1011 1011 HOH HOH . E 4 HOH A 12 1012 1012 HOH HOH . E 4 HOH A 13 1013 1013 HOH HOH . E 4 HOH A 14 1014 1014 HOH HOH . E 4 HOH A 15 1015 1015 HOH HOH . E 4 HOH A 16 1016 1016 HOH HOH . E 4 HOH A 17 1017 1017 HOH HOH . E 4 HOH A 18 1018 1018 HOH HOH . E 4 HOH A 19 1019 1019 HOH HOH . E 4 HOH A 20 1020 1020 HOH HOH . E 4 HOH A 21 1021 1021 HOH HOH . E 4 HOH A 22 1022 1022 HOH HOH . E 4 HOH A 23 1023 1023 HOH HOH . E 4 HOH A 24 1024 1024 HOH HOH . E 4 HOH A 25 1025 1025 HOH HOH . E 4 HOH A 26 1026 1026 HOH HOH . E 4 HOH A 27 1027 1027 HOH HOH . E 4 HOH A 28 1028 1028 HOH HOH . E 4 HOH A 29 1029 1029 HOH HOH . E 4 HOH A 30 1030 1030 HOH HOH . E 4 HOH A 31 1031 1031 HOH HOH . E 4 HOH A 32 1032 1032 HOH HOH . E 4 HOH A 33 1033 1033 HOH HOH . E 4 HOH A 34 1034 1034 HOH HOH . E 4 HOH A 35 1035 1035 HOH HOH . E 4 HOH A 36 1036 1036 HOH HOH . E 4 HOH A 37 1037 1037 HOH HOH . E 4 HOH A 38 1038 1038 HOH HOH . E 4 HOH A 39 1039 1039 HOH HOH . E 4 HOH A 40 1040 1040 HOH HOH . E 4 HOH A 41 1041 1041 HOH HOH . E 4 HOH A 42 1042 1042 HOH HOH . E 4 HOH A 43 1043 1043 HOH HOH . E 4 HOH A 44 1044 1044 HOH HOH . E 4 HOH A 45 1045 1045 HOH HOH . E 4 HOH A 46 1046 1046 HOH HOH . E 4 HOH A 47 1047 1047 HOH HOH . E 4 HOH A 48 1048 1048 HOH HOH . E 4 HOH A 49 1049 1049 HOH HOH . E 4 HOH A 50 1050 1050 HOH HOH . E 4 HOH A 51 1051 1051 HOH HOH . E 4 HOH A 52 1052 1052 HOH HOH . E 4 HOH A 53 1053 1053 HOH HOH . E 4 HOH A 54 1054 1054 HOH HOH . E 4 HOH A 55 1055 1055 HOH HOH . E 4 HOH A 56 1056 1056 HOH HOH . E 4 HOH A 57 1057 1057 HOH HOH . E 4 HOH A 58 1058 1058 HOH HOH . E 4 HOH A 59 1059 1059 HOH HOH . E 4 HOH A 60 1060 1060 HOH HOH . E 4 HOH A 61 1061 1061 HOH HOH . E 4 HOH A 62 1062 1062 HOH HOH . E 4 HOH A 63 1063 1063 HOH HOH . E 4 HOH A 64 1064 1064 HOH HOH . E 4 HOH A 65 1065 1065 HOH HOH . E 4 HOH A 66 1066 1066 HOH HOH . E 4 HOH A 67 1067 1067 HOH HOH . E 4 HOH A 68 1068 1068 HOH HOH . E 4 HOH A 69 1069 1069 HOH HOH . E 4 HOH A 70 1070 1070 HOH HOH . E 4 HOH A 71 1071 1071 HOH HOH . E 4 HOH A 72 1072 1072 HOH HOH . E 4 HOH A 73 1073 1073 HOH HOH . E 4 HOH A 74 1074 1074 HOH HOH . E 4 HOH A 75 1075 1075 HOH HOH . E 4 HOH A 76 1076 1076 HOH HOH . E 4 HOH A 77 1077 1077 HOH HOH . E 4 HOH A 78 1078 1078 HOH HOH . E 4 HOH A 79 1079 1079 HOH HOH . E 4 HOH A 80 1080 1080 HOH HOH . E 4 HOH A 81 1081 1081 HOH HOH . E 4 HOH A 82 1082 1082 HOH HOH . E 4 HOH A 83 1083 1083 HOH HOH . E 4 HOH A 84 1084 1084 HOH HOH . E 4 HOH A 85 1085 1085 HOH HOH . E 4 HOH A 86 1086 1086 HOH HOH . E 4 HOH A 87 1087 1087 HOH HOH . E 4 HOH A 88 1088 1088 HOH HOH . E 4 HOH A 89 1089 1089 HOH HOH . E 4 HOH A 90 1090 1090 HOH HOH . E 4 HOH A 91 1091 1091 HOH HOH . E 4 HOH A 92 1092 1092 HOH HOH . E 4 HOH A 93 1093 1093 HOH HOH . E 4 HOH A 94 1094 1094 HOH HOH . E 4 HOH A 95 1095 1095 HOH HOH . E 4 HOH A 96 1096 1096 HOH HOH . E 4 HOH A 97 1097 1097 HOH HOH . E 4 HOH A 98 1098 1098 HOH HOH . E 4 HOH A 99 1099 1099 HOH HOH . E 4 HOH A 100 1100 1100 HOH HOH . E 4 HOH A 101 1101 1101 HOH HOH . E 4 HOH A 102 1102 1102 HOH HOH . E 4 HOH A 103 1103 1103 HOH HOH . E 4 HOH A 104 1104 1104 HOH HOH . E 4 HOH A 105 1105 1105 HOH HOH . E 4 HOH A 106 1106 1106 HOH HOH . E 4 HOH A 107 1107 1107 HOH HOH . E 4 HOH A 108 1108 1108 HOH HOH . E 4 HOH A 109 1109 1109 HOH HOH . E 4 HOH A 110 1110 1110 HOH HOH . E 4 HOH A 111 1111 1111 HOH HOH . E 4 HOH A 112 1112 1112 HOH HOH . E 4 HOH A 113 1113 1113 HOH HOH . E 4 HOH A 114 1114 1114 HOH HOH . E 4 HOH A 115 1115 1115 HOH HOH . E 4 HOH A 116 1116 1116 HOH HOH . E 4 HOH A 117 1117 1117 HOH HOH . E 4 HOH A 118 1118 1118 HOH HOH . E 4 HOH A 119 1119 1119 HOH HOH . E 4 HOH A 120 1120 1120 HOH HOH . E 4 HOH A 121 1121 1121 HOH HOH . E 4 HOH A 122 1122 1122 HOH HOH . E 4 HOH A 123 1123 1123 HOH HOH . E 4 HOH A 124 1124 1124 HOH HOH . E 4 HOH A 125 1125 1125 HOH HOH . E 4 HOH A 126 1126 1126 HOH HOH . E 4 HOH A 127 1127 1127 HOH HOH . E 4 HOH A 128 1128 1128 HOH HOH . E 4 HOH A 129 1129 1129 HOH HOH . E 4 HOH A 130 1130 1130 HOH HOH . E 4 HOH A 131 1131 1131 HOH HOH . E 4 HOH A 132 1132 1132 HOH HOH . E 4 HOH A 133 1133 1133 HOH HOH . E 4 HOH A 134 1134 1134 HOH HOH . E 4 HOH A 135 1135 1135 HOH HOH . E 4 HOH A 136 1136 1136 HOH HOH . E 4 HOH A 137 1137 1137 HOH HOH . E 4 HOH A 138 1138 1138 HOH HOH . E 4 HOH A 139 1139 1139 HOH HOH . E 4 HOH A 140 1140 1140 HOH HOH . E 4 HOH A 141 1141 1141 HOH HOH . E 4 HOH A 142 1142 1142 HOH HOH . E 4 HOH A 143 1143 1143 HOH HOH . E 4 HOH A 144 1144 1144 HOH HOH . E 4 HOH A 145 1145 1145 HOH HOH . E 4 HOH A 146 1146 1146 HOH HOH . E 4 HOH A 147 1147 1147 HOH HOH . E 4 HOH A 148 1148 1148 HOH HOH . E 4 HOH A 149 1149 1149 HOH HOH . E 4 HOH A 150 1150 1150 HOH HOH . E 4 HOH A 151 1151 1151 HOH HOH . E 4 HOH A 152 1152 1152 HOH HOH . E 4 HOH A 153 1153 1153 HOH HOH . E 4 HOH A 154 1154 1154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . B 2 16.353 116.859 63.59 1 15.84 ? P1 A3P 2001 A 1 HETATM 2 O O1P A3P . . . B 2 15.541 116.171 62.567 1 17.35 ? O1P A3P 2001 A 1 HETATM 3 O O2P A3P . . . B 2 17.283 117.93 63.134 1 19.88 ? O2P A3P 2001 A 1 HETATM 4 O O3P A3P . . . B 2 15.515 117.145 64.779 1 16.19 ? O3P A3P 2001 A 1 HETATM 5 P P2 A3P . . . B 2 19.532 109.949 63.649 1 14.6 ? P2 A3P 2001 A 1 HETATM 6 O O4P A3P . . . B 2 18.552 109.738 62.555 1 16.22 ? O4P A3P 2001 A 1 HETATM 7 O O5P A3P . . . B 2 20.965 110.088 63.261 1 14.13 ? O5P A3P 2001 A 1 HETATM 8 O O6P A3P . . . B 2 19.214 109.043 64.795 1 15.55 ? O6P A3P 2001 A 1 HETATM 9 O O5' A3P . . . B 2 19.126 111.366 64.242 1 14.55 ? O5' A3P 2001 A 1 HETATM 10 C C5' A3P . . . B 2 18.831 112.463 63.375 1 13.4 ? C5' A3P 2001 A 1 HETATM 11 C C4' A3P . . . B 2 18.576 113.714 64.181 1 15.26 ? C4' A3P 2001 A 1 HETATM 12 O O4' A3P . . . B 2 19.804 114.095 64.885 1 15.21 ? O4' A3P 2001 A 1 HETATM 13 C C3' A3P . . . B 2 18.175 114.954 63.368 1 15.31 ? C3' A3P 2001 A 1 HETATM 14 O O3' A3P . . . B 2 17.34 115.748 64.213 1 17.04 ? O3' A3P 2001 A 1 HETATM 15 C C2' A3P . . . B 2 19.535 115.613 63.144 1 15.23 ? C2' A3P 2001 A 1 HETATM 16 O O2' A3P . . . B 2 19.505 116.973 62.738 1 17.83 ? O2' A3P 2001 A 1 HETATM 17 C C1' A3P . . . B 2 20.144 115.432 64.53 1 14.97 ? C1' A3P 2001 A 1 HETATM 18 N N9 A3P . . . B 2 21.597 115.61 64.625 1 15.67 ? N9 A3P 2001 A 1 HETATM 19 C C8 A3P . . . B 2 22.581 115.147 63.78 1 16.43 ? C8 A3P 2001 A 1 HETATM 20 N N7 A3P . . . B 2 23.796 115.474 64.155 1 15.42 ? N7 A3P 2001 A 1 HETATM 21 C C5 A3P . . . B 2 23.591 116.341 65.214 1 16.01 ? C5 A3P 2001 A 1 HETATM 22 C C6 A3P . . . B 2 24.479 117.132 65.992 1 16 ? C6 A3P 2001 A 1 HETATM 23 N N6 A3P . . . B 2 25.813 117.096 65.856 1 18.06 ? N6 A3P 2001 A 1 HETATM 24 N N1 A3P . . . B 2 23.947 117.879 66.997 1 17.16 ? N1 A3P 2001 A 1 HETATM 25 C C2 A3P . . . B 2 22.612 117.809 67.222 1 15.7 ? C2 A3P 2001 A 1 HETATM 26 N N3 A3P . . . B 2 21.671 117.174 66.5 1 16.03 ? N3 A3P 2001 A 1 HETATM 27 C C4 A3P . . . B 2 22.239 116.402 65.545 1 14.61 ? C4 A3P 2001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #