data_1LSU # _model_server_result.job_id fTB9opHMS_QXlSfmeVFEjg _model_server_result.datetime_utc '2024-11-05 13:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lsu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 1LSU # _exptl.entry_id 1LSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LSU _cell.length_a 126.6 _cell.length_b 126.6 _cell.length_c 98.7 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 235 n n PA O2A NAI sing 236 n n PA O5B NAI sing 237 n n PA O3 NAI sing 238 n n O2A HOA2 NAI sing 239 n n O5B C5B NAI sing 240 n n C5B C4B NAI sing 241 n n C5B H51A NAI sing 242 n n C5B H52A NAI sing 243 n n C4B O4B NAI sing 244 n n C4B C3B NAI sing 245 n n C4B H4B NAI sing 246 n n O4B C1B NAI sing 247 n n C3B O3B NAI sing 248 n n C3B C2B NAI sing 249 n n C3B H3B NAI sing 250 n n O3B HO3A NAI sing 251 n n C2B O2B NAI sing 252 n n C2B C1B NAI sing 253 n n C2B H2B NAI sing 254 n n O2B HO2A NAI sing 255 n n C1B N9A NAI sing 256 n n C1B H1B NAI sing 257 n n N9A C8A NAI sing 258 n y N9A C4A NAI sing 259 n y C8A N7A NAI doub 260 n y C8A H8A NAI sing 261 n n N7A C5A NAI sing 262 n y C5A C6A NAI sing 263 n y C5A C4A NAI doub 264 n y C6A N6A NAI sing 265 n n C6A N1A NAI doub 266 n y N6A H61A NAI sing 267 n n N6A H62A NAI sing 268 n n N1A C2A NAI sing 269 n y C2A N3A NAI doub 270 n y C2A H2A NAI sing 271 n n N3A C4A NAI sing 272 n y O3 PN NAI sing 273 n n PN O1N NAI sing 274 n n PN O2N NAI doub 275 n n PN O5D NAI sing 276 n n O1N HO1N NAI sing 277 n n O5D C5D NAI sing 278 n n C5D C4D NAI sing 279 n n C5D H51N NAI sing 280 n n C5D H52N NAI sing 281 n n C4D O4D NAI sing 282 n n C4D C3D NAI sing 283 n n C4D H4D NAI sing 284 n n O4D C1D NAI sing 285 n n C3D O3D NAI sing 286 n n C3D C2D NAI sing 287 n n C3D H3D NAI sing 288 n n O3D HO3N NAI sing 289 n n C2D O2D NAI sing 290 n n C2D C1D NAI sing 291 n n C2D H2D NAI sing 292 n n O2D HO2N NAI sing 293 n n C1D N1N NAI sing 294 n n C1D H1D NAI sing 295 n n N1N C2N NAI sing 296 n n N1N C6N NAI sing 297 n n C2N C3N NAI doub 298 n n C2N H2N NAI sing 299 n n C3N C7N NAI sing 300 n n C3N C4N NAI sing 301 n n C7N O7N NAI doub 302 n n C7N N7N NAI sing 303 n n N7N H71N NAI sing 304 n n N7N H72N NAI sing 305 n n C4N C5N NAI sing 306 n n C4N H4N NAI sing 307 n n C4N H42N NAI sing 308 n n C5N C6N NAI doub 309 n n C5N H5N NAI sing 310 n n C6N H6N NAI sing 311 n n # _atom_sites.entry_id 1LSU _atom_sites.fract_transf_matrix[1][1] 0.007899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 1001 1001 NAI NAD . D 2 NAI B 1 1002 1001 NAI NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . D 2 53.456 45.599 34.363 1 113.58 ? PA NAI 1002 B 1 HETATM 2 O O1A NAI . . . D 2 54.825 46.153 34.324 1 114.35 ? O1A NAI 1002 B 1 HETATM 3 O O2A NAI . . . D 2 52.468 46.632 34.858 1 113.72 ? O2A NAI 1002 B 1 HETATM 4 O O5B NAI . . . D 2 53.301 44.332 35.318 1 108.47 ? O5B NAI 1002 B 1 HETATM 5 C C5B NAI . . . D 2 54.099 43.144 35.245 1 100.13 ? C5B NAI 1002 B 1 HETATM 6 C C4B NAI . . . D 2 53.945 42.616 36.624 1 95.97 ? C4B NAI 1002 B 1 HETATM 7 O O4B NAI . . . D 2 54.675 41.361 36.988 1 93.79 ? O4B NAI 1002 B 1 HETATM 8 C C3B NAI . . . D 2 54.291 43.659 37.707 1 94.37 ? C3B NAI 1002 B 1 HETATM 9 O O3B NAI . . . D 2 53.217 43.752 38.693 1 93.04 ? O3B NAI 1002 B 1 HETATM 10 C C2B NAI . . . D 2 55.651 43.091 38.152 1 93 ? C2B NAI 1002 B 1 HETATM 11 O O2B NAI . . . D 2 56.09 43.579 39.432 1 93.94 ? O2B NAI 1002 B 1 HETATM 12 C C1B NAI . . . D 2 55.304 41.643 38.201 1 91.6 ? C1B NAI 1002 B 1 HETATM 13 N N9A NAI . . . D 2 56.427 40.725 38.508 1 88.49 ? N9A NAI 1002 B 1 HETATM 14 C C8A NAI . . . D 2 56.421 39.633 39.34 1 87.35 ? C8A NAI 1002 B 1 HETATM 15 N N7A NAI . . . D 2 57.601 38.993 39.433 1 85.19 ? N7A NAI 1002 B 1 HETATM 16 C C5A NAI . . . D 2 58.419 39.732 38.597 1 84.81 ? C5A NAI 1002 B 1 HETATM 17 C C6A NAI . . . D 2 59.79 39.588 38.256 1 83.63 ? C6A NAI 1002 B 1 HETATM 18 N N6A NAI . . . D 2 60.553 38.604 38.744 1 82.07 ? N6A NAI 1002 B 1 HETATM 19 N N1A NAI . . . D 2 60.325 40.509 37.38 1 83.96 ? N1A NAI 1002 B 1 HETATM 20 C C2A NAI . . . D 2 59.496 41.519 36.893 1 84.94 ? C2A NAI 1002 B 1 HETATM 21 N N3A NAI . . . D 2 58.211 41.722 37.16 1 84.68 ? N3A NAI 1002 B 1 HETATM 22 C C4A NAI . . . D 2 57.721 40.807 38.023 1 85.85 ? C4A NAI 1002 B 1 HETATM 23 O O3 NAI . . . D 2 53.001 45.102 33.013 1 115.88 ? O3 NAI 1002 B 1 HETATM 24 P PN NAI . . . D 2 51.447 44.943 32.521 1 119.17 ? PN NAI 1002 B 1 HETATM 25 O O1N NAI . . . D 2 50.597 46.06 33.028 1 118.4 ? O1N NAI 1002 B 1 HETATM 26 O O2N NAI . . . D 2 50.888 43.635 32.986 1 118.44 ? O2N NAI 1002 B 1 HETATM 27 O O5D NAI . . . D 2 51.687 45.056 30.98 1 120.16 ? O5D NAI 1002 B 1 HETATM 28 C C5D NAI . . . D 2 52.458 46.07 30.286 1 122.9 ? C5D NAI 1002 B 1 HETATM 29 C C4D NAI . . . D 2 52.298 45.685 28.828 1 125.2 ? C4D NAI 1002 B 1 HETATM 30 O O4D NAI . . . D 2 53.538 45.079 28.38 1 127.11 ? O4D NAI 1002 B 1 HETATM 31 C C3D NAI . . . D 2 51.21 44.617 28.608 1 126 ? C3D NAI 1002 B 1 HETATM 32 O O3D NAI . . . D 2 49.938 45.085 28.134 1 126.43 ? O3D NAI 1002 B 1 HETATM 33 C C2D NAI . . . D 2 51.886 43.526 27.723 1 127 ? C2D NAI 1002 B 1 HETATM 34 O O2D NAI . . . D 2 51.116 43.323 26.527 1 127.74 ? O2D NAI 1002 B 1 HETATM 35 C C1D NAI . . . D 2 53.251 44.077 27.432 1 127.85 ? C1D NAI 1002 B 1 HETATM 36 N N1N NAI . . . D 2 54.408 43.11 27.442 1 129.13 ? N1N NAI 1002 B 1 HETATM 37 C C2N NAI . . . D 2 54.105 41.919 28.045 1 129.93 ? C2N NAI 1002 B 1 HETATM 38 C C3N NAI . . . D 2 55.047 41.04 28.089 1 131.13 ? C3N NAI 1002 B 1 HETATM 39 C C7N NAI . . . D 2 54.982 39.715 28.67 1 131.78 ? C7N NAI 1002 B 1 HETATM 40 O O7N NAI . . . D 2 56.046 39.078 28.577 1 132.03 ? O7N NAI 1002 B 1 HETATM 41 N N7N NAI . . . D 2 53.853 39.224 29.265 1 131.88 ? N7N NAI 1002 B 1 HETATM 42 C C4N NAI . . . D 2 56.436 41.225 27.532 1 130.73 ? C4N NAI 1002 B 1 HETATM 43 C C5N NAI . . . D 2 56.627 42.5 26.937 1 130.6 ? C5N NAI 1002 B 1 HETATM 44 C C6N NAI . . . D 2 55.665 43.485 26.857 1 129.92 ? C6N NAI 1002 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #