data_1LSV # _model_server_result.job_id -vjCFFVRJ4CRePeqgm_KuQ _model_server_result.datetime_utc '2024-12-22 02:10:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":719}' # _entry.id 1LSV # _exptl.entry_id 1LSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LSV _cell.length_a 127.01 _cell.length_b 127.01 _cell.length_c 58.14 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 200 1_555 B FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 C C CMO . A CMO 500 1_555 B FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc3 C O CMO . A CMO 500 1_555 B FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 1LSV _atom_sites.fract_transf_matrix[1][1] 0.007873 _atom_sites.fract_transf_matrix[1][2] 0.004546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 719 719 HEM HEM . C 3 CMO A 1 500 500 CMO CM . D 4 HOH A 1 1 1 HOH TIP . D 4 HOH A 2 2 2 HOH TIP . D 4 HOH A 3 3 3 HOH TIP . D 4 HOH A 4 5 5 HOH TIP . D 4 HOH A 5 6 6 HOH TIP . D 4 HOH A 6 7 7 HOH TIP . D 4 HOH A 7 8 8 HOH TIP . D 4 HOH A 8 9 9 HOH TIP . D 4 HOH A 9 10 10 HOH TIP . D 4 HOH A 10 11 11 HOH TIP . D 4 HOH A 11 14 14 HOH TIP . D 4 HOH A 12 15 15 HOH TIP . D 4 HOH A 13 16 16 HOH TIP . D 4 HOH A 14 17 17 HOH TIP . D 4 HOH A 15 18 18 HOH TIP . D 4 HOH A 16 19 19 HOH TIP . D 4 HOH A 17 20 20 HOH TIP . D 4 HOH A 18 21 21 HOH TIP . D 4 HOH A 19 22 22 HOH TIP . D 4 HOH A 20 23 23 HOH TIP . D 4 HOH A 21 25 25 HOH TIP . D 4 HOH A 22 26 26 HOH TIP . D 4 HOH A 23 27 27 HOH TIP . D 4 HOH A 24 28 28 HOH TIP . D 4 HOH A 25 29 29 HOH TIP . D 4 HOH A 26 31 31 HOH TIP . D 4 HOH A 27 32 32 HOH TIP . D 4 HOH A 28 33 33 HOH TIP . D 4 HOH A 29 34 34 HOH TIP . D 4 HOH A 30 36 36 HOH TIP . D 4 HOH A 31 37 37 HOH TIP . D 4 HOH A 32 38 38 HOH TIP . D 4 HOH A 33 39 39 HOH TIP . D 4 HOH A 34 40 40 HOH TIP . D 4 HOH A 35 42 42 HOH TIP . D 4 HOH A 36 45 45 HOH TIP . D 4 HOH A 37 46 46 HOH TIP . D 4 HOH A 38 50 50 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 45.146 54.169 32.748 1 10.86 ? CHA HEM 719 A 1 HETATM 2 C CHB HEM . . . B 2 49.49 54.293 30.832 1 8.79 ? CHB HEM 719 A 1 HETATM 3 C CHC HEM . . . B 2 51.131 56.461 34.739 1 6.64 ? CHC HEM 719 A 1 HETATM 4 C CHD HEM . . . B 2 46.646 57.068 36.29 1 7.97 ? CHD HEM 719 A 1 HETATM 5 C C1A HEM . . . B 2 46.172 53.939 31.892 1 10.78 ? C1A HEM 719 A 1 HETATM 6 C C2A HEM . . . B 2 46.138 53.087 30.744 1 12.91 ? C2A HEM 719 A 1 HETATM 7 C C3A HEM . . . B 2 47.371 53.122 30.188 1 9.91 ? C3A HEM 719 A 1 HETATM 8 C C4A HEM . . . B 2 48.186 53.979 31.007 1 6.69 ? C4A HEM 719 A 1 HETATM 9 C CMA HEM . . . B 2 47.879 52.362 28.947 1 6.93 ? CMA HEM 719 A 1 HETATM 10 C CAA HEM . . . B 2 44.963 52.136 30.454 1 15.68 ? CAA HEM 719 A 1 HETATM 11 C CBA HEM . . . B 2 44.642 51.997 28.973 1 22.96 ? CBA HEM 719 A 1 HETATM 12 C CGA HEM . . . B 2 43.687 50.842 28.712 1 25.57 ? CGA HEM 719 A 1 HETATM 13 O O1A HEM . . . B 2 42.457 51.186 28.6 1 26.4 ? O1A HEM 719 A 1 HETATM 14 O O2A HEM . . . B 2 44.087 49.702 28.908 1 28 ? O2A HEM 719 A 1 HETATM 15 C C1B HEM . . . B 2 50.312 54.93 31.701 1 4.45 ? C1B HEM 719 A 1 HETATM 16 C C2B HEM . . . B 2 51.704 55.135 31.46 1 8.82 ? C2B HEM 719 A 1 HETATM 17 C C3B HEM . . . B 2 52.198 55.757 32.533 1 6.66 ? C3B HEM 719 A 1 HETATM 18 C C4B HEM . . . B 2 51.078 56.017 33.439 1 7.88 ? C4B HEM 719 A 1 HETATM 19 C CMB HEM . . . B 2 52.481 54.613 30.241 1 8.32 ? CMB HEM 719 A 1 HETATM 20 C CAB HEM . . . B 2 53.642 56.129 32.75 1 6.7 ? CAB HEM 719 A 1 HETATM 21 C CBB HEM . . . B 2 53.864 57.384 33.575 1 6.97 ? CBB HEM 719 A 1 HETATM 22 C C1C HEM . . . B 2 50.044 56.756 35.533 1 7.57 ? C1C HEM 719 A 1 HETATM 23 C C2C HEM . . . B 2 50.147 57.354 36.86 1 9.19 ? C2C HEM 719 A 1 HETATM 24 C C3C HEM . . . B 2 48.896 57.473 37.332 1 7.88 ? C3C HEM 719 A 1 HETATM 25 C C4C HEM . . . B 2 48.024 56.971 36.306 1 9.32 ? C4C HEM 719 A 1 HETATM 26 C CMC HEM . . . B 2 51.497 57.752 37.488 1 7.39 ? CMC HEM 719 A 1 HETATM 27 C CAC HEM . . . B 2 48.372 57.883 38.721 1 5.19 ? CAC HEM 719 A 1 HETATM 28 C CBC HEM . . . B 2 49.403 58.575 39.608 1 9.5 ? CBC HEM 719 A 1 HETATM 29 C C1D HEM . . . B 2 45.82 56.376 35.445 1 10.6 ? C1D HEM 719 A 1 HETATM 30 C C2D HEM . . . B 2 44.406 56.132 35.636 1 8.97 ? C2D HEM 719 A 1 HETATM 31 C C3D HEM . . . B 2 44.008 55.336 34.62 1 10.36 ? C3D HEM 719 A 1 HETATM 32 C C4D HEM . . . B 2 45.141 55.089 33.794 1 11.69 ? C4D HEM 719 A 1 HETATM 33 C CMD HEM . . . B 2 43.592 56.656 36.829 1 8.59 ? CMD HEM 719 A 1 HETATM 34 C CAD HEM . . . B 2 42.683 54.619 34.43 1 13.42 ? CAD HEM 719 A 1 HETATM 35 C CBD HEM . . . B 2 42.594 53.374 35.378 1 15.32 ? CBD HEM 719 A 1 HETATM 36 C CGD HEM . . . B 2 41.967 52.15 34.772 1 18.2 ? CGD HEM 719 A 1 HETATM 37 O O1D HEM . . . B 2 41.761 51.169 35.501 1 18.15 ? O1D HEM 719 A 1 HETATM 38 O O2D HEM . . . B 2 41.75 52.191 33.536 1 19.44 ? O2D HEM 719 A 1 HETATM 39 N NA HEM . . . B 2 47.434 54.426 32.049 1 8.43 ? NA HEM 719 A 1 HETATM 40 N NB HEM . . . B 2 49.941 55.503 32.898 1 4.48 ? NB HEM 719 A 1 HETATM 41 N NC HEM . . . B 2 48.75 56.53 35.223 1 8.39 ? NC HEM 719 A 1 HETATM 42 N ND HEM . . . B 2 46.265 55.687 34.311 1 6.66 ? ND HEM 719 A 1 HETATM 43 FE FE HEM . . . B 2 48.073 55.543 33.601 1.5 17.79 ? FE HEM 719 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #