data_1LSW # _model_server_result.job_id JDdMtkKXpBjJzt1EwI8sXg _model_server_result.datetime_utc '2024-12-22 02:16:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lsw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":719}' # _entry.id 1LSW # _exptl.entry_id 1LSW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LSW _cell.length_a 127.57 _cell.length_b 127.57 _cell.length_c 58.42 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LSW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 61 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 200 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 719 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.103 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1LSW _atom_sites.fract_transf_matrix[1][1] 0.007839 _atom_sites.fract_transf_matrix[1][2] 0.004526 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 719 719 HEM HEM . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 2 2 HOH TIP . C 3 HOH A 3 3 3 HOH TIP . C 3 HOH A 4 4 4 HOH TIP . C 3 HOH A 5 5 5 HOH TIP . C 3 HOH A 6 6 6 HOH TIP . C 3 HOH A 7 7 7 HOH TIP . C 3 HOH A 8 8 8 HOH TIP . C 3 HOH A 9 9 9 HOH TIP . C 3 HOH A 10 10 10 HOH TIP . C 3 HOH A 11 11 11 HOH TIP . C 3 HOH A 12 12 12 HOH TIP . C 3 HOH A 13 13 13 HOH TIP . C 3 HOH A 14 14 14 HOH TIP . C 3 HOH A 15 15 15 HOH TIP . C 3 HOH A 16 16 16 HOH TIP . C 3 HOH A 17 17 17 HOH TIP . C 3 HOH A 18 18 18 HOH TIP . C 3 HOH A 19 19 19 HOH TIP . C 3 HOH A 20 20 20 HOH TIP . C 3 HOH A 21 21 21 HOH TIP . C 3 HOH A 22 22 22 HOH TIP . C 3 HOH A 23 23 23 HOH TIP . C 3 HOH A 24 24 24 HOH TIP . C 3 HOH A 25 25 25 HOH TIP . C 3 HOH A 26 26 26 HOH TIP . C 3 HOH A 27 27 27 HOH TIP . C 3 HOH A 28 28 28 HOH TIP . C 3 HOH A 29 29 29 HOH TIP . C 3 HOH A 30 30 30 HOH TIP . C 3 HOH A 31 31 31 HOH TIP . C 3 HOH A 32 32 32 HOH TIP . C 3 HOH A 33 33 33 HOH TIP . C 3 HOH A 34 34 34 HOH TIP . C 3 HOH A 35 35 35 HOH TIP . C 3 HOH A 36 36 36 HOH TIP . C 3 HOH A 37 37 37 HOH TIP . C 3 HOH A 38 38 38 HOH TIP . C 3 HOH A 39 39 39 HOH TIP . C 3 HOH A 40 40 40 HOH TIP . C 3 HOH A 41 41 41 HOH TIP . C 3 HOH A 42 42 42 HOH TIP . C 3 HOH A 43 43 43 HOH TIP . C 3 HOH A 44 44 44 HOH TIP . C 3 HOH A 45 45 45 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 45.396 54.474 32.948 1 6.07 ? CHA HEM 719 A 1 HETATM 2 C CHB HEM . . . B 2 49.773 54.547 30.988 1 12.3 ? CHB HEM 719 A 1 HETATM 3 C CHC HEM . . . B 2 51.507 56.758 34.885 1 9.2 ? CHC HEM 719 A 1 HETATM 4 C CHD HEM . . . B 2 47.022 57.262 36.466 1 8.57 ? CHD HEM 719 A 1 HETATM 5 C C1A HEM . . . B 2 46.438 54.232 32.095 1 12.41 ? C1A HEM 719 A 1 HETATM 6 C C2A HEM . . . B 2 46.412 53.337 30.959 1 11.07 ? C2A HEM 719 A 1 HETATM 7 C C3A HEM . . . B 2 47.628 53.367 30.403 1 11.12 ? C3A HEM 719 A 1 HETATM 8 C C4A HEM . . . B 2 48.471 54.247 31.193 1 12.08 ? C4A HEM 719 A 1 HETATM 9 C CMA HEM . . . B 2 48.1 52.612 29.147 1 17.52 ? CMA HEM 719 A 1 HETATM 10 C CAA HEM . . . B 2 45.228 52.388 30.637 1 14.54 ? CAA HEM 719 A 1 HETATM 11 C CBA HEM . . . B 2 44.68 52.583 29.219 1 22.79 ? CBA HEM 719 A 1 HETATM 12 C CGA HEM . . . B 2 43.927 51.359 28.691 1 27.09 ? CGA HEM 719 A 1 HETATM 13 O O1A HEM . . . B 2 42.806 51.613 28.162 1 26.85 ? O1A HEM 719 A 1 HETATM 14 O O2A HEM . . . B 2 44.388 50.224 28.89 1 31.47 ? O2A HEM 719 A 1 HETATM 15 C C1B HEM . . . B 2 50.623 55.158 31.864 1 10.42 ? C1B HEM 719 A 1 HETATM 16 C C2B HEM . . . B 2 52.029 55.3 31.644 1 12.23 ? C2B HEM 719 A 1 HETATM 17 C C3B HEM . . . B 2 52.54 55.933 32.712 1 8.1 ? C3B HEM 719 A 1 HETATM 18 C C4B HEM . . . B 2 51.432 56.257 33.594 1 8.41 ? C4B HEM 719 A 1 HETATM 19 C CMB HEM . . . B 2 52.801 54.708 30.458 1 18.37 ? CMB HEM 719 A 1 HETATM 20 C CAB HEM . . . B 2 54.023 56.195 32.981 1 6.11 ? CAB HEM 719 A 1 HETATM 21 C CBB HEM . . . B 2 54.346 57.47 33.774 1 7.39 ? CBB HEM 719 A 1 HETATM 22 C C1C HEM . . . B 2 50.429 57.007 35.682 1 5.28 ? C1C HEM 719 A 1 HETATM 23 C C2C HEM . . . B 2 50.525 57.551 37.018 1 7.07 ? C2C HEM 719 A 1 HETATM 24 C C3C HEM . . . B 2 49.272 57.642 37.477 1 5.67 ? C3C HEM 719 A 1 HETATM 25 C C4C HEM . . . B 2 48.394 57.201 36.434 1 8.72 ? C4C HEM 719 A 1 HETATM 26 C CMC HEM . . . B 2 51.868 57.966 37.693 1 2.97 ? CMC HEM 719 A 1 HETATM 27 C CAC HEM . . . B 2 48.754 58.002 38.866 1 6.52 ? CAC HEM 719 A 1 HETATM 28 C CBC HEM . . . B 2 49.689 58.925 39.659 1 6.22 ? CBC HEM 719 A 1 HETATM 29 C C1D HEM . . . B 2 46.167 56.632 35.638 1 10.12 ? C1D HEM 719 A 1 HETATM 30 C C2D HEM . . . B 2 44.748 56.406 35.864 1 9.31 ? C2D HEM 719 A 1 HETATM 31 C C3D HEM . . . B 2 44.314 55.625 34.859 1 9.64 ? C3D HEM 719 A 1 HETATM 32 C C4D HEM . . . B 2 45.423 55.37 34 1 9.28 ? C4D HEM 719 A 1 HETATM 33 C CMD HEM . . . B 2 43.956 56.912 37.075 1 9.7 ? CMD HEM 719 A 1 HETATM 34 C CAD HEM . . . B 2 42.972 54.914 34.726 1 11.01 ? CAD HEM 719 A 1 HETATM 35 C CBD HEM . . . B 2 42.92 53.701 35.684 1 16.75 ? CBD HEM 719 A 1 HETATM 36 C CGD HEM . . . B 2 42.287 52.451 35.143 1 17.46 ? CGD HEM 719 A 1 HETATM 37 O O1D HEM . . . B 2 42.123 51.493 35.911 1 22.57 ? O1D HEM 719 A 1 HETATM 38 O O2D HEM . . . B 2 42.021 52.446 33.949 1 20.3 ? O2D HEM 719 A 1 HETATM 39 N NA HEM . . . B 2 47.722 54.763 32.222 1 11.39 ? NA HEM 719 A 1 HETATM 40 N NB HEM . . . B 2 50.263 55.795 33.043 1 7.34 ? NB HEM 719 A 1 HETATM 41 N NC HEM . . . B 2 49.1 56.832 35.332 1 8.93 ? NC HEM 719 A 1 HETATM 42 N ND HEM . . . B 2 46.573 56.011 34.458 1 9.86 ? ND HEM 719 A 1 HETATM 43 FE FE HEM . . . B 2 48.38 55.983 33.685 1 9.67 ? FE HEM 719 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #