data_1LSX # _model_server_result.job_id LyO1cshsmMK86OeZgV1EVw _model_server_result.datetime_utc '2024-12-21 15:12:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":719}' # _entry.id 1LSX # _exptl.entry_id 1LSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LSX _cell.length_a 127.02 _cell.length_b 127.02 _cell.length_c 58.62 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C N3 1MZ . A 1MZ 111 1_555 B FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc2 A NE2 HIS 61 A HIS 200 1_555 B FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1LSX _atom_sites.fract_transf_matrix[1][1] 0.007873 _atom_sites.fract_transf_matrix[1][2] 0.004545 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 719 719 HEM HEM . C 3 1MZ A 1 111 1 1MZ 1MZ . D 4 HOH A 1 1 1 HOH TIP . D 4 HOH A 2 2 2 HOH TIP . D 4 HOH A 3 3 3 HOH TIP . D 4 HOH A 4 4 4 HOH TIP . D 4 HOH A 5 5 5 HOH TIP . D 4 HOH A 6 6 6 HOH TIP . D 4 HOH A 7 7 7 HOH TIP . D 4 HOH A 8 9 9 HOH TIP . D 4 HOH A 9 10 10 HOH TIP . D 4 HOH A 10 11 11 HOH TIP . D 4 HOH A 11 12 12 HOH TIP . D 4 HOH A 12 13 13 HOH TIP . D 4 HOH A 13 14 14 HOH TIP . D 4 HOH A 14 15 15 HOH TIP . D 4 HOH A 15 16 16 HOH TIP . D 4 HOH A 16 17 17 HOH TIP . D 4 HOH A 17 18 18 HOH TIP . D 4 HOH A 18 19 19 HOH TIP . D 4 HOH A 19 20 20 HOH TIP . D 4 HOH A 20 21 21 HOH TIP . D 4 HOH A 21 22 22 HOH TIP . D 4 HOH A 22 24 24 HOH TIP . D 4 HOH A 23 25 25 HOH TIP . D 4 HOH A 24 26 26 HOH TIP . D 4 HOH A 25 27 27 HOH TIP . D 4 HOH A 26 28 28 HOH TIP . D 4 HOH A 27 29 29 HOH TIP . D 4 HOH A 28 30 30 HOH TIP . D 4 HOH A 29 31 31 HOH TIP . D 4 HOH A 30 32 32 HOH TIP . D 4 HOH A 31 33 33 HOH TIP . D 4 HOH A 32 34 34 HOH TIP . D 4 HOH A 33 35 35 HOH TIP . D 4 HOH A 34 37 37 HOH TIP . D 4 HOH A 35 41 41 HOH TIP . D 4 HOH A 36 42 42 HOH TIP . D 4 HOH A 37 45 45 HOH TIP . D 4 HOH A 38 47 47 HOH TIP . D 4 HOH A 39 49 49 HOH TIP . D 4 HOH A 40 51 51 HOH TIP . D 4 HOH A 41 52 52 HOH TIP . D 4 HOH A 42 53 53 HOH TIP . D 4 HOH A 43 54 54 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 44.821 54.497 32.822 1 9.57 ? CHA HEM 719 A 1 HETATM 2 C CHB HEM . . . B 2 49.241 54.327 30.862 1 10.44 ? CHB HEM 719 A 1 HETATM 3 C CHC HEM . . . B 2 50.984 56.44 34.817 1 4.32 ? CHC HEM 719 A 1 HETATM 4 C CHD HEM . . . B 2 46.548 57.115 36.457 1 10.38 ? CHD HEM 719 A 1 HETATM 5 C C1A HEM . . . B 2 45.856 54.198 31.95 1 15.09 ? C1A HEM 719 A 1 HETATM 6 C C2A HEM . . . B 2 45.748 53.455 30.696 1 16.81 ? C2A HEM 719 A 1 HETATM 7 C C3A HEM . . . B 2 46.974 53.376 30.175 1 14.34 ? C3A HEM 719 A 1 HETATM 8 C C4A HEM . . . B 2 47.888 54.098 31.051 1 14.65 ? C4A HEM 719 A 1 HETATM 9 C CMA HEM . . . B 2 47.388 52.688 28.885 1 11.33 ? CMA HEM 719 A 1 HETATM 10 C CAA HEM . . . B 2 44.461 52.763 30.216 1 22.25 ? CAA HEM 719 A 1 HETATM 11 C CBA HEM . . . B 2 44.616 51.261 30.07 1 32.84 ? CBA HEM 719 A 1 HETATM 12 C CGA HEM . . . B 2 43.295 50.53 29.87 1 39.19 ? CGA HEM 719 A 1 HETATM 13 O O1A HEM . . . B 2 42.464 51.082 29.055 1 43.57 ? O1A HEM 719 A 1 HETATM 14 O O2A HEM . . . B 2 43.093 49.504 30.501 1 42.12 ? O2A HEM 719 A 1 HETATM 15 C C1B HEM . . . B 2 50.085 54.938 31.749 1 5.26 ? C1B HEM 719 A 1 HETATM 16 C C2B HEM . . . B 2 51.484 55.074 31.537 1 2 ? C2B HEM 719 A 1 HETATM 17 C C3B HEM . . . B 2 52.014 55.636 32.645 1 3.83 ? C3B HEM 719 A 1 HETATM 18 C C4B HEM . . . B 2 50.906 55.962 33.533 1 2 ? C4B HEM 719 A 1 HETATM 19 C CMB HEM . . . B 2 52.221 54.554 30.316 1 5.86 ? CMB HEM 719 A 1 HETATM 20 C CAB HEM . . . B 2 53.527 55.893 32.902 1 8.38 ? CAB HEM 719 A 1 HETATM 21 C CBB HEM . . . B 2 53.913 57.128 33.723 1 2 ? CBB HEM 719 A 1 HETATM 22 C C1C HEM . . . B 2 49.906 56.785 35.615 1 6.98 ? C1C HEM 719 A 1 HETATM 23 C C2C HEM . . . B 2 50.022 57.308 37.016 1 4.98 ? C2C HEM 719 A 1 HETATM 24 C C3C HEM . . . B 2 48.783 57.45 37.476 1 5.92 ? C3C HEM 719 A 1 HETATM 25 C C4C HEM . . . B 2 47.894 57.048 36.408 1 5.31 ? C4C HEM 719 A 1 HETATM 26 C CMC HEM . . . B 2 51.349 57.555 37.741 1 2 ? CMC HEM 719 A 1 HETATM 27 C CAC HEM . . . B 2 48.267 57.729 38.904 1 5.41 ? CAC HEM 719 A 1 HETATM 28 C CBC HEM . . . B 2 49.063 58.758 39.711 1 7.52 ? CBC HEM 719 A 1 HETATM 29 C C1D HEM . . . B 2 45.692 56.465 35.625 1 16.15 ? C1D HEM 719 A 1 HETATM 30 C C2D HEM . . . B 2 44.285 56.393 35.804 1 13.47 ? C2D HEM 719 A 1 HETATM 31 C C3D HEM . . . B 2 43.791 55.695 34.769 1 17.91 ? C3D HEM 719 A 1 HETATM 32 C C4D HEM . . . B 2 44.904 55.31 33.927 1 10.93 ? C4D HEM 719 A 1 HETATM 33 C CMD HEM . . . B 2 43.522 57.11 36.9 1 13.34 ? CMD HEM 719 A 1 HETATM 34 C CAD HEM . . . B 2 42.353 55.31 34.528 1 19.19 ? CAD HEM 719 A 1 HETATM 35 C CBD HEM . . . B 2 42.031 53.967 35.237 1 26.55 ? CBD HEM 719 A 1 HETATM 36 C CGD HEM . . . B 2 40.992 53.165 34.52 1 35.17 ? CGD HEM 719 A 1 HETATM 37 O O1D HEM . . . B 2 40.642 52.073 35.006 1 35.72 ? O1D HEM 719 A 1 HETATM 38 O O2D HEM . . . B 2 40.572 53.659 33.438 1 39.76 ? O2D HEM 719 A 1 HETATM 39 N NA HEM . . . B 2 47.163 54.581 32.128 1 8.16 ? NA HEM 719 A 1 HETATM 40 N NB HEM . . . B 2 49.724 55.52 32.97 1 2 ? NB HEM 719 A 1 HETATM 41 N NC HEM . . . B 2 48.587 56.616 35.286 1 2 ? NC HEM 719 A 1 HETATM 42 N ND HEM . . . B 2 46.075 55.785 34.443 1 6.73 ? ND HEM 719 A 1 HETATM 43 FE FE HEM . . . B 2 47.873 55.658 33.677 1 14.89 ? FE HEM 719 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #