data_1LT0 # _model_server_result.job_id GdxAO_Z3cuiHWedQlHR86A _model_server_result.datetime_utc '2024-10-20 12:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":719}' # _entry.id 1LT0 # _exptl.entry_id 1LT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LT0 _cell.length_a 127.77 _cell.length_b 127.77 _cell.length_c 58.3 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 200 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 B C CYN . A CYN 500 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 B N CYN . A CYN 500 1_555 C FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 1LT0 _atom_sites.fract_transf_matrix[1][1] 0.007827 _atom_sites.fract_transf_matrix[1][2] 0.004519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYN A 1 500 500 CYN CN . C 3 HEM A 1 719 719 HEM HEM . D 4 HOH A 1 1 1 HOH TIP . D 4 HOH A 2 2 2 HOH TIP . D 4 HOH A 3 4 4 HOH TIP . D 4 HOH A 4 5 5 HOH TIP . D 4 HOH A 5 6 6 HOH TIP . D 4 HOH A 6 7 7 HOH TIP . D 4 HOH A 7 9 9 HOH TIP . D 4 HOH A 8 11 11 HOH TIP . D 4 HOH A 9 13 13 HOH TIP . D 4 HOH A 10 14 14 HOH TIP . D 4 HOH A 11 16 16 HOH TIP . D 4 HOH A 12 17 17 HOH TIP . D 4 HOH A 13 18 18 HOH TIP . D 4 HOH A 14 20 20 HOH TIP . D 4 HOH A 15 21 21 HOH TIP . D 4 HOH A 16 22 22 HOH TIP . D 4 HOH A 17 23 23 HOH TIP . D 4 HOH A 18 24 24 HOH TIP . D 4 HOH A 19 25 25 HOH TIP . D 4 HOH A 20 26 26 HOH TIP . D 4 HOH A 21 34 34 HOH TIP . D 4 HOH A 22 36 36 HOH TIP . D 4 HOH A 23 38 38 HOH TIP . D 4 HOH A 24 40 40 HOH TIP . D 4 HOH A 25 41 41 HOH TIP . D 4 HOH A 26 49 49 HOH TIP . D 4 HOH A 27 50 50 HOH TIP . D 4 HOH A 28 52 52 HOH TIP . D 4 HOH A 29 55 55 HOH TIP . D 4 HOH A 30 56 56 HOH TIP . D 4 HOH A 31 57 57 HOH TIP . D 4 HOH A 32 58 58 HOH TIP . D 4 HOH A 33 60 60 HOH TIP . D 4 HOH A 34 64 64 HOH TIP . D 4 HOH A 35 65 65 HOH TIP . D 4 HOH A 36 66 66 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 45.065 55.099 32.647 1 12.48 ? CHA HEM 719 A 1 HETATM 2 C CHB HEM . . . C 3 49.424 54.679 30.929 1 11.63 ? CHB HEM 719 A 1 HETATM 3 C CHC HEM . . . C 3 51.185 56.716 34.913 1 4.83 ? CHC HEM 719 A 1 HETATM 4 C CHD HEM . . . C 3 46.737 57.562 36.416 1 3.03 ? CHD HEM 719 A 1 HETATM 5 C C1A HEM . . . C 3 46.088 54.731 31.851 1 11.79 ? C1A HEM 719 A 1 HETATM 6 C C2A HEM . . . C 3 45.961 53.948 30.644 1 13.24 ? C2A HEM 719 A 1 HETATM 7 C C3A HEM . . . C 3 47.18 53.831 30.144 1 14.63 ? C3A HEM 719 A 1 HETATM 8 C C4A HEM . . . C 3 48.101 54.532 31.055 1 13.16 ? C4A HEM 719 A 1 HETATM 9 C CMA HEM . . . C 3 47.633 53.094 28.868 1 17.73 ? CMA HEM 719 A 1 HETATM 10 C CAA HEM . . . C 3 44.613 53.249 30.209 1 14.03 ? CAA HEM 719 A 1 HETATM 11 C CBA HEM . . . C 3 44.657 51.709 30.259 1 15.12 ? CBA HEM 719 A 1 HETATM 12 C CGA HEM . . . C 3 43.311 51.002 29.989 1 19.1 ? CGA HEM 719 A 1 HETATM 13 O O1A HEM . . . C 3 42.29 51.789 29.789 1 18.48 ? O1A HEM 719 A 1 HETATM 14 O O2A HEM . . . C 3 43.281 49.753 29.965 1 17.47 ? O2A HEM 719 A 1 HETATM 15 C C1B HEM . . . C 3 50.272 55.221 31.837 1 9.46 ? C1B HEM 719 A 1 HETATM 16 C C2B HEM . . . C 3 51.625 55.325 31.615 1 3.57 ? C2B HEM 719 A 1 HETATM 17 C C3B HEM . . . C 3 52.169 55.827 32.747 1 3.16 ? C3B HEM 719 A 1 HETATM 18 C C4B HEM . . . C 3 51.094 56.197 33.632 1 4.17 ? C4B HEM 719 A 1 HETATM 19 C CMB HEM . . . C 3 52.333 54.772 30.336 1 6.34 ? CMB HEM 719 A 1 HETATM 20 C CAB HEM . . . C 3 53.681 55.954 33.073 1 4.58 ? CAB HEM 719 A 1 HETATM 21 C CBB HEM . . . C 3 54.169 57.24 33.743 1 5.99 ? CBB HEM 719 A 1 HETATM 22 C C1C HEM . . . C 3 50.119 57.146 35.671 1 2 ? C1C HEM 719 A 1 HETATM 23 C C2C HEM . . . C 3 50.224 57.719 36.979 1 2.62 ? C2C HEM 719 A 1 HETATM 24 C C3C HEM . . . C 3 48.978 57.955 37.399 1 5.21 ? C3C HEM 719 A 1 HETATM 25 C C4C HEM . . . C 3 48.096 57.502 36.38 1 4.24 ? C4C HEM 719 A 1 HETATM 26 C CMC HEM . . . C 3 51.563 57.884 37.763 1 3.91 ? CMC HEM 719 A 1 HETATM 27 C CAC HEM . . . C 3 48.448 58.331 38.812 1 2 ? CAC HEM 719 A 1 HETATM 28 C CBC HEM . . . C 3 49.5 58.899 39.73 1 3.72 ? CBC HEM 719 A 1 HETATM 29 C C1D HEM . . . C 3 45.886 56.957 35.526 1 9.82 ? C1D HEM 719 A 1 HETATM 30 C C2D HEM . . . C 3 44.457 56.817 35.669 1 7.6 ? C2D HEM 719 A 1 HETATM 31 C C3D HEM . . . C 3 44.004 56.161 34.596 1 12.59 ? C3D HEM 719 A 1 HETATM 32 C C4D HEM . . . C 3 45.131 55.889 33.75 1 12.85 ? C4D HEM 719 A 1 HETATM 33 C CMD HEM . . . C 3 43.642 57.347 36.863 1 10.76 ? CMD HEM 719 A 1 HETATM 34 C CAD HEM . . . C 3 42.573 55.643 34.306 1 15.22 ? CAD HEM 719 A 1 HETATM 35 C CBD HEM . . . C 3 42.27 54.396 35.21 1 22.5 ? CBD HEM 719 A 1 HETATM 36 C CGD HEM . . . C 3 41.4 53.35 34.527 1 27.15 ? CGD HEM 719 A 1 HETATM 37 O O1D HEM . . . C 3 40.828 52.454 35.22 1 28.78 ? O1D HEM 719 A 1 HETATM 38 O O2D HEM . . . C 3 41.355 53.437 33.278 1 25.32 ? O2D HEM 719 A 1 HETATM 39 N NA HEM . . . C 3 47.392 55.038 32.078 1 11.42 ? NA HEM 719 A 1 HETATM 40 N NB HEM . . . C 3 49.938 55.804 33.076 1 6.15 ? NB HEM 719 A 1 HETATM 41 N NC HEM . . . C 3 48.809 57.013 35.321 1 8.08 ? NC HEM 719 A 1 HETATM 42 N ND HEM . . . C 3 46.306 56.316 34.333 1 5.62 ? ND HEM 719 A 1 HETATM 43 FE FE HEM . . . C 3 48.096 56.066 33.675 1 11.88 ? FE HEM 719 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #