data_1LU0 # _model_server_result.job_id oKVv1nNclg8cAVvQj5zQEg _model_server_result.datetime_utc '2024-12-22 13:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lu0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 1LU0 # _exptl.entry_id 1LU0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LU0 _cell.length_a 47.28 _cell.length_b 58.63 _cell.length_c 19.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LU0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 94.56 117.26 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 20 A CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 10 A CYS 10 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 16 A CYS 16 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 B SG CYS 3 B CYS 3 1_555 B SG CYS 20 B CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf5 B SG CYS 10 B CYS 10 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 16 B CYS 16 1_555 B SG CYS 28 B CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc1 A OE1 GLU 19 A GLU 19 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 A OE1 GLU 19 A GLU 19 2_775 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc3 C ZN ZN . A ZN 201 1_555 B OE2 GLU 19 B GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc4 C ZN ZN . A ZN 201 1_555 B OE1 GLU 19 B GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc5 C ZN ZN . A ZN 201 1_555 B OE1 GLU 19 B GLU 19 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc6 C ZN ZN . A ZN 201 1_555 B OE2 GLU 19 B GLU 19 2_775 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 94 n n C1 C2 GOL sing 95 n n C1 H11 GOL sing 96 n n C1 H12 GOL sing 97 n n O1 HO1 GOL sing 98 n n C2 O2 GOL sing 99 n n C2 C3 GOL sing 100 n n C2 H2 GOL sing 101 n n O2 HO2 GOL sing 102 n n C3 O3 GOL sing 103 n n C3 H31 GOL sing 104 n n C3 H32 GOL sing 105 n n O3 HO3 GOL sing 106 n n # _atom_sites.entry_id 1LU0 _atom_sites.fract_transf_matrix[1][1] 0.021151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.05176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 201 ZN ZN . D 3 GOL A 1 202 202 GOL GOL . E 4 SO4 B 1 205 205 SO4 SO4 . F 5 MRD B 1 204 204 MRD MPD . G 3 GOL B 1 203 203 GOL GOL . H 6 HOH A 1 302 302 HOH HOH . H 6 HOH A 2 303 303 HOH HOH . H 6 HOH A 3 306 306 HOH HOH . H 6 HOH A 4 307 307 HOH HOH . H 6 HOH A 5 308 308 HOH HOH . H 6 HOH A 6 309 309 HOH HOH . H 6 HOH A 7 310 310 HOH HOH . H 6 HOH A 8 311 311 HOH HOH . H 6 HOH A 9 313 313 HOH HOH . H 6 HOH A 10 315 315 HOH HOH . H 6 HOH A 11 318 318 HOH HOH . H 6 HOH A 12 319 319 HOH HOH . H 6 HOH A 13 322 322 HOH HOH . H 6 HOH A 14 329 329 HOH HOH . H 6 HOH A 15 330 330 HOH HOH . H 6 HOH A 16 332 332 HOH HOH . H 6 HOH A 17 333 333 HOH HOH . H 6 HOH A 18 334 334 HOH HOH . H 6 HOH A 19 335 335 HOH HOH . H 6 HOH A 20 336 336 HOH HOH . H 6 HOH A 21 338 338 HOH HOH . H 6 HOH A 22 340 340 HOH HOH . H 6 HOH A 23 343 343 HOH HOH . H 6 HOH A 24 345 345 HOH HOH . H 6 HOH A 25 346 346 HOH HOH . H 6 HOH A 26 348 348 HOH HOH . H 6 HOH A 27 350 350 HOH HOH . H 6 HOH A 28 351 351 HOH HOH . H 6 HOH A 29 352 352 HOH HOH . H 6 HOH A 30 356 356 HOH HOH . H 6 HOH A 31 357 357 HOH HOH . H 6 HOH A 32 361 361 HOH HOH . H 6 HOH A 33 362 362 HOH HOH . H 6 HOH A 34 364 364 HOH HOH . H 6 HOH A 35 365 365 HOH HOH . H 6 HOH A 36 367 367 HOH HOH . H 6 HOH A 37 368 368 HOH HOH . H 6 HOH A 38 369 369 HOH HOH . H 6 HOH A 39 374 374 HOH HOH . I 6 HOH B 1 301 301 HOH HOH . I 6 HOH B 2 304 304 HOH HOH . I 6 HOH B 3 305 305 HOH HOH . I 6 HOH B 4 312 312 HOH HOH . I 6 HOH B 5 314 314 HOH HOH . I 6 HOH B 6 316 316 HOH HOH . I 6 HOH B 7 317 317 HOH HOH . I 6 HOH B 8 320 320 HOH HOH . I 6 HOH B 9 321 321 HOH HOH . I 6 HOH B 10 323 323 HOH HOH . I 6 HOH B 11 324 324 HOH HOH . I 6 HOH B 12 325 325 HOH HOH . I 6 HOH B 13 326 326 HOH HOH . I 6 HOH B 14 327 327 HOH HOH . I 6 HOH B 15 328 328 HOH HOH . I 6 HOH B 16 331 331 HOH HOH . I 6 HOH B 17 337 337 HOH HOH . I 6 HOH B 18 339 339 HOH HOH . I 6 HOH B 19 341 341 HOH HOH . I 6 HOH B 20 342 342 HOH HOH . I 6 HOH B 21 344 344 HOH HOH . I 6 HOH B 22 347 347 HOH HOH . I 6 HOH B 23 349 349 HOH HOH . I 6 HOH B 24 353 353 HOH HOH . I 6 HOH B 25 354 354 HOH HOH . I 6 HOH B 26 355 355 HOH HOH . I 6 HOH B 27 358 358 HOH HOH . I 6 HOH B 28 359 359 HOH HOH . I 6 HOH B 29 360 360 HOH HOH . I 6 HOH B 30 363 363 HOH HOH . I 6 HOH B 31 366 366 HOH HOH . I 6 HOH B 32 370 370 HOH HOH . I 6 HOH B 33 371 371 HOH HOH . I 6 HOH B 34 372 372 HOH HOH . I 6 HOH B 35 373 373 HOH HOH . I 6 HOH B 36 375 375 HOH HOH . I 6 HOH B 37 376 376 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 36.71 47.621 11.348 0.6 12.51 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 37.624 48.428 12.109 0.6 15.65 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 36.693 48.006 9.914 0.6 12.46 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 37.967 47.728 9.327 0.6 12.87 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 36.327 49.437 9.65 0.6 15.09 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 36.403 49.806 8.237 0.6 15.32 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #