data_1LVB # _model_server_result.job_id F9-NEk8A9A95iwkaic0t1Q _model_server_result.datetime_utc '2024-11-04 20:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 1LVB # _exptl.entry_id 1LVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LVB _cell.length_a 125.317 _cell.length_b 125.317 _cell.length_c 127.933 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA hexadecameric 16 software_defined_assembly 3 PISA octameric 8 software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1,2,3,4 A,B,C,D,E,F,G,H,I,J 4 1,2 A,B,C,D,E,F,G,H,I,J 5 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 125.317 125.317 0 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 125.317 125.317 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 137 A CYS 130 1_555 A SG CYS 137 A CYS 130 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A C ASP 88 A ASP 81 1_555 A N MSE 89 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 89 A MSE 82 1_555 A N ILE 90 A ILE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ARG 93 A ARG 86 1_555 A N MSE 94 A MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 94 A MSE 87 1_555 A N PRO 95 A PRO 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C SER 127 A SER 120 1_555 A N MSE 128 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 128 A MSE 121 1_555 A N SER 129 A SER 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C SER 130 A SER 123 1_555 A N MSE 131 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 131 A MSE 124 1_555 A N VAL 132 A VAL 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C PHE 193 A PHE 186 1_555 A N MSE 194 A MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 194 A MSE 187 1_555 A N GLU 195 A GLU 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C PHE 224 A PHE 217 1_555 A N MSE 225 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 225 A MSE 218 1_555 A N SER 226 A SER 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 C C ASP 88 B ASP 81 1_555 C N MSE 89 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 C C MSE 89 B MSE 82 1_555 C N ILE 90 B ILE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 C C ARG 93 B ARG 86 1_555 C N MSE 94 B MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 C C MSE 94 B MSE 87 1_555 C N PRO 95 B PRO 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale17 C C SER 127 B SER 120 1_555 C N MSE 128 B MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale18 C C MSE 128 B MSE 121 1_555 C N SER 129 B SER 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 C C SER 130 B SER 123 1_555 C N MSE 131 B MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 C C MSE 131 B MSE 124 1_555 C N VAL 132 B VAL 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale21 C C PHE 193 B PHE 186 1_555 C N MSE 194 B MSE 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 C C MSE 194 B MSE 187 1_555 C N GLU 195 B GLU 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 C C PHE 224 B PHE 217 1_555 C N MSE 225 B MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 C C MSE 225 B MSE 218 1_555 C N SER 226 B SER 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 1LVB _atom_sites.fract_transf_matrix[1][1] 0.00798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 401 401 GOL GOL . F 3 GOL B 1 402 401 GOL GOL . G 4 HOH A 1 402 1 HOH HOH . G 4 HOH A 2 403 2 HOH HOH . G 4 HOH A 3 404 3 HOH HOH . G 4 HOH A 4 405 7 HOH HOH . G 4 HOH A 5 406 8 HOH HOH . G 4 HOH A 6 407 9 HOH HOH . G 4 HOH A 7 408 11 HOH HOH . G 4 HOH A 8 409 15 HOH HOH . G 4 HOH A 9 410 16 HOH HOH . G 4 HOH A 10 411 18 HOH HOH . G 4 HOH A 11 412 20 HOH HOH . G 4 HOH A 12 413 21 HOH HOH . G 4 HOH A 13 414 23 HOH HOH . G 4 HOH A 14 415 25 HOH HOH . G 4 HOH A 15 416 26 HOH HOH . G 4 HOH A 16 417 28 HOH HOH . G 4 HOH A 17 418 29 HOH HOH . G 4 HOH A 18 419 30 HOH HOH . G 4 HOH A 19 420 33 HOH HOH . G 4 HOH A 20 421 34 HOH HOH . G 4 HOH A 21 422 35 HOH HOH . G 4 HOH A 22 423 39 HOH HOH . G 4 HOH A 23 424 42 HOH HOH . G 4 HOH A 24 425 44 HOH HOH . G 4 HOH A 25 426 46 HOH HOH . G 4 HOH A 26 427 48 HOH HOH . G 4 HOH A 27 428 50 HOH HOH . G 4 HOH A 28 429 52 HOH HOH . G 4 HOH A 29 430 55 HOH HOH . G 4 HOH A 30 431 56 HOH HOH . G 4 HOH A 31 432 58 HOH HOH . G 4 HOH A 32 433 59 HOH HOH . G 4 HOH A 33 434 60 HOH HOH . G 4 HOH A 34 435 61 HOH HOH . G 4 HOH A 35 436 64 HOH HOH . G 4 HOH A 36 437 66 HOH HOH . G 4 HOH A 37 438 70 HOH HOH . G 4 HOH A 38 439 77 HOH HOH . G 4 HOH A 39 440 78 HOH HOH . G 4 HOH A 40 441 79 HOH HOH . G 4 HOH A 41 442 80 HOH HOH . G 4 HOH A 42 443 81 HOH HOH . G 4 HOH A 43 444 85 HOH HOH . G 4 HOH A 44 445 88 HOH HOH . G 4 HOH A 45 446 90 HOH HOH . G 4 HOH A 46 447 91 HOH HOH . G 4 HOH A 47 448 92 HOH HOH . G 4 HOH A 48 449 94 HOH HOH . G 4 HOH A 49 450 96 HOH HOH . G 4 HOH A 50 451 98 HOH HOH . G 4 HOH A 51 452 99 HOH HOH . G 4 HOH A 52 453 100 HOH HOH . G 4 HOH A 53 454 102 HOH HOH . G 4 HOH A 54 455 103 HOH HOH . G 4 HOH A 55 456 106 HOH HOH . G 4 HOH A 56 457 107 HOH HOH . G 4 HOH A 57 458 110 HOH HOH . G 4 HOH A 58 459 113 HOH HOH . G 4 HOH A 59 460 114 HOH HOH . G 4 HOH A 60 461 118 HOH HOH . G 4 HOH A 61 462 119 HOH HOH . G 4 HOH A 62 463 121 HOH HOH . G 4 HOH A 63 464 122 HOH HOH . G 4 HOH A 64 465 123 HOH HOH . G 4 HOH A 65 466 130 HOH HOH . G 4 HOH A 66 467 135 HOH HOH . G 4 HOH A 67 468 137 HOH HOH . G 4 HOH A 68 469 138 HOH HOH . G 4 HOH A 69 470 140 HOH HOH . G 4 HOH A 70 471 141 HOH HOH . G 4 HOH A 71 472 142 HOH HOH . G 4 HOH A 72 473 143 HOH HOH . G 4 HOH A 73 474 144 HOH HOH . G 4 HOH A 74 475 146 HOH HOH . G 4 HOH A 75 476 147 HOH HOH . G 4 HOH A 76 477 149 HOH HOH . G 4 HOH A 77 478 158 HOH HOH . G 4 HOH A 78 479 159 HOH HOH . G 4 HOH A 79 480 160 HOH HOH . G 4 HOH A 80 481 162 HOH HOH . G 4 HOH A 81 482 163 HOH HOH . G 4 HOH A 82 483 166 HOH HOH . G 4 HOH A 83 484 168 HOH HOH . G 4 HOH A 84 485 172 HOH HOH . G 4 HOH A 85 486 182 HOH HOH . H 4 HOH C 1 51 51 HOH HOH . H 4 HOH C 2 109 109 HOH HOH . H 4 HOH C 3 170 170 HOH HOH . H 4 HOH C 4 171 171 HOH HOH . I 4 HOH B 1 403 4 HOH HOH . I 4 HOH B 2 404 5 HOH HOH . I 4 HOH B 3 405 6 HOH HOH . I 4 HOH B 4 406 10 HOH HOH . I 4 HOH B 5 407 12 HOH HOH . I 4 HOH B 6 408 13 HOH HOH . I 4 HOH B 7 409 14 HOH HOH . I 4 HOH B 8 410 17 HOH HOH . I 4 HOH B 9 411 19 HOH HOH . I 4 HOH B 10 412 22 HOH HOH . I 4 HOH B 11 413 24 HOH HOH . I 4 HOH B 12 414 27 HOH HOH . I 4 HOH B 13 415 31 HOH HOH . I 4 HOH B 14 416 32 HOH HOH . I 4 HOH B 15 417 36 HOH HOH . I 4 HOH B 16 418 37 HOH HOH . I 4 HOH B 17 419 38 HOH HOH . I 4 HOH B 18 420 40 HOH HOH . I 4 HOH B 19 421 41 HOH HOH . I 4 HOH B 20 422 43 HOH HOH . I 4 HOH B 21 423 45 HOH HOH . I 4 HOH B 22 424 47 HOH HOH . I 4 HOH B 23 425 49 HOH HOH . I 4 HOH B 24 426 53 HOH HOH . I 4 HOH B 25 427 54 HOH HOH . I 4 HOH B 26 428 57 HOH HOH . I 4 HOH B 27 429 62 HOH HOH . I 4 HOH B 28 430 63 HOH HOH . I 4 HOH B 29 431 65 HOH HOH . I 4 HOH B 30 432 67 HOH HOH . I 4 HOH B 31 433 68 HOH HOH . I 4 HOH B 32 434 69 HOH HOH . I 4 HOH B 33 435 71 HOH HOH . I 4 HOH B 34 436 72 HOH HOH . I 4 HOH B 35 437 73 HOH HOH . I 4 HOH B 36 438 74 HOH HOH . I 4 HOH B 37 439 75 HOH HOH . I 4 HOH B 38 440 76 HOH HOH . I 4 HOH B 39 441 82 HOH HOH . I 4 HOH B 40 442 83 HOH HOH . I 4 HOH B 41 443 84 HOH HOH . I 4 HOH B 42 444 86 HOH HOH . I 4 HOH B 43 445 87 HOH HOH . I 4 HOH B 44 446 89 HOH HOH . I 4 HOH B 45 447 93 HOH HOH . I 4 HOH B 46 448 95 HOH HOH . I 4 HOH B 47 449 101 HOH HOH . I 4 HOH B 48 450 104 HOH HOH . I 4 HOH B 49 451 105 HOH HOH . I 4 HOH B 50 452 108 HOH HOH . I 4 HOH B 51 453 111 HOH HOH . I 4 HOH B 52 454 112 HOH HOH . I 4 HOH B 53 455 115 HOH HOH . I 4 HOH B 54 456 116 HOH HOH . I 4 HOH B 55 457 117 HOH HOH . I 4 HOH B 56 458 120 HOH HOH . I 4 HOH B 57 459 124 HOH HOH . I 4 HOH B 58 460 125 HOH HOH . I 4 HOH B 59 461 126 HOH HOH . I 4 HOH B 60 462 127 HOH HOH . I 4 HOH B 61 463 128 HOH HOH . I 4 HOH B 62 464 129 HOH HOH . I 4 HOH B 63 465 131 HOH HOH . I 4 HOH B 64 466 132 HOH HOH . I 4 HOH B 65 467 133 HOH HOH . I 4 HOH B 66 468 134 HOH HOH . I 4 HOH B 67 469 136 HOH HOH . I 4 HOH B 68 470 139 HOH HOH . I 4 HOH B 69 471 145 HOH HOH . I 4 HOH B 70 472 148 HOH HOH . I 4 HOH B 71 473 150 HOH HOH . I 4 HOH B 72 474 151 HOH HOH . I 4 HOH B 73 475 152 HOH HOH . I 4 HOH B 74 476 153 HOH HOH . I 4 HOH B 75 477 154 HOH HOH . I 4 HOH B 76 478 155 HOH HOH . I 4 HOH B 77 479 156 HOH HOH . I 4 HOH B 78 480 157 HOH HOH . I 4 HOH B 79 481 161 HOH HOH . I 4 HOH B 80 482 164 HOH HOH . I 4 HOH B 81 483 165 HOH HOH . I 4 HOH B 82 484 167 HOH HOH . I 4 HOH B 83 485 173 HOH HOH . I 4 HOH B 84 486 174 HOH HOH . I 4 HOH B 85 487 175 HOH HOH . I 4 HOH B 86 488 176 HOH HOH . I 4 HOH B 87 489 177 HOH HOH . I 4 HOH B 88 490 178 HOH HOH . I 4 HOH B 89 491 179 HOH HOH . I 4 HOH B 90 492 180 HOH HOH . I 4 HOH B 91 493 181 HOH HOH . J 4 HOH D 1 97 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 37.905 45.467 16.154 1 53.47 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . F 3 38.249 44.638 17.479 1 54.21 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . F 3 38.038 46.842 16.028 1 53.8 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . F 3 39.175 47.278 16.603 1 50.82 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . F 3 37.078 47.297 15.461 1 52.97 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . F 3 35.71 47.378 14.725 1 54.51 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #