data_1LVG # _model_server_result.job_id G3KocUulCnbkKbqoTyOBsg _model_server_result.datetime_utc '2024-11-05 04:36:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 1LVG # _exptl.entry_id 1LVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LVG _cell.length_a 67.241 _cell.length_b 67.241 _cell.length_c 108.696 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 37 A SER 37 1_555 B K K . A K 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc2 A O ASP 101 A ASP 101 1_555 B K K . A K 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc3 D N7 5GP . A 5GP 1202 1_555 B K K . A K 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc4 B K K . A K 1203 1_555 E O HOH . A HOH 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc5 B K K . A K 1203 1_555 E O HOH . A HOH 1214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc6 B K K . A K 1203 1_555 E O HOH . A HOH 1248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1LVG _atom_sites.fract_transf_matrix[1][1] 0.014872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 1203 1203 K K . C 3 ADP A 1 1201 1201 ADP ADP . D 4 5GP A 1 1202 1202 5GP 5GP . E 5 HOH A 1 1204 1 HOH WAT . E 5 HOH A 2 1205 2 HOH WAT . E 5 HOH A 3 1206 3 HOH WAT . E 5 HOH A 4 1207 4 HOH WAT . E 5 HOH A 5 1208 5 HOH WAT . E 5 HOH A 6 1209 6 HOH WAT . E 5 HOH A 7 1210 7 HOH WAT . E 5 HOH A 8 1211 8 HOH WAT . E 5 HOH A 9 1212 9 HOH WAT . E 5 HOH A 10 1213 10 HOH WAT . E 5 HOH A 11 1214 11 HOH WAT . E 5 HOH A 12 1215 12 HOH WAT . E 5 HOH A 13 1216 13 HOH WAT . E 5 HOH A 14 1217 14 HOH WAT . E 5 HOH A 15 1218 15 HOH WAT . E 5 HOH A 16 1219 16 HOH WAT . E 5 HOH A 17 1220 17 HOH WAT . E 5 HOH A 18 1221 18 HOH WAT . E 5 HOH A 19 1222 19 HOH WAT . E 5 HOH A 20 1223 20 HOH WAT . E 5 HOH A 21 1224 21 HOH WAT . E 5 HOH A 22 1225 22 HOH WAT . E 5 HOH A 23 1226 23 HOH WAT . E 5 HOH A 24 1227 24 HOH WAT . E 5 HOH A 25 1228 25 HOH WAT . E 5 HOH A 26 1229 26 HOH WAT . E 5 HOH A 27 1230 27 HOH WAT . E 5 HOH A 28 1231 28 HOH WAT . E 5 HOH A 29 1232 29 HOH WAT . E 5 HOH A 30 1233 30 HOH WAT . E 5 HOH A 31 1234 31 HOH WAT . E 5 HOH A 32 1235 32 HOH WAT . E 5 HOH A 33 1236 33 HOH WAT . E 5 HOH A 34 1237 34 HOH WAT . E 5 HOH A 35 1238 35 HOH WAT . E 5 HOH A 36 1239 36 HOH WAT . E 5 HOH A 37 1240 37 HOH WAT . E 5 HOH A 38 1241 38 HOH WAT . E 5 HOH A 39 1242 39 HOH WAT . E 5 HOH A 40 1243 40 HOH WAT . E 5 HOH A 41 1244 41 HOH WAT . E 5 HOH A 42 1245 42 HOH WAT . E 5 HOH A 43 1246 43 HOH WAT . E 5 HOH A 44 1247 44 HOH WAT . E 5 HOH A 45 1248 45 HOH WAT . E 5 HOH A 46 1249 46 HOH WAT . E 5 HOH A 47 1250 47 HOH WAT . E 5 HOH A 48 1251 48 HOH WAT . E 5 HOH A 49 1252 49 HOH WAT . E 5 HOH A 50 1253 50 HOH WAT . E 5 HOH A 51 1254 51 HOH WAT . E 5 HOH A 52 1255 52 HOH WAT . E 5 HOH A 53 1256 53 HOH WAT . E 5 HOH A 54 1257 54 HOH WAT . E 5 HOH A 55 1258 55 HOH WAT . E 5 HOH A 56 1259 56 HOH WAT . E 5 HOH A 57 1260 57 HOH WAT . E 5 HOH A 58 1261 58 HOH WAT . E 5 HOH A 59 1262 59 HOH WAT . E 5 HOH A 60 1263 60 HOH WAT . E 5 HOH A 61 1264 61 HOH WAT . E 5 HOH A 62 1265 62 HOH WAT . E 5 HOH A 63 1266 63 HOH WAT . E 5 HOH A 64 1267 64 HOH WAT . E 5 HOH A 65 1268 65 HOH WAT . E 5 HOH A 66 1269 66 HOH WAT . E 5 HOH A 67 1270 67 HOH WAT . E 5 HOH A 68 1271 68 HOH WAT . E 5 HOH A 69 1272 69 HOH WAT . E 5 HOH A 70 1273 70 HOH WAT . E 5 HOH A 71 1274 71 HOH WAT . E 5 HOH A 72 1275 72 HOH WAT . E 5 HOH A 73 1276 73 HOH WAT . E 5 HOH A 74 1277 74 HOH WAT . E 5 HOH A 75 1278 75 HOH WAT . E 5 HOH A 76 1279 76 HOH WAT . E 5 HOH A 77 1280 77 HOH WAT . E 5 HOH A 78 1281 78 HOH WAT . E 5 HOH A 79 1282 79 HOH WAT . E 5 HOH A 80 1283 80 HOH WAT . E 5 HOH A 81 1284 81 HOH WAT . E 5 HOH A 82 1285 82 HOH WAT . E 5 HOH A 83 1286 83 HOH WAT . E 5 HOH A 84 1287 84 HOH WAT . E 5 HOH A 85 1288 85 HOH WAT . E 5 HOH A 86 1289 86 HOH WAT . E 5 HOH A 87 1290 87 HOH WAT . E 5 HOH A 88 1291 88 HOH WAT . E 5 HOH A 89 1292 89 HOH WAT . E 5 HOH A 90 1293 90 HOH WAT . E 5 HOH A 91 1294 91 HOH WAT . E 5 HOH A 92 1295 92 HOH WAT . E 5 HOH A 93 1296 93 HOH WAT . E 5 HOH A 94 1297 94 HOH WAT . E 5 HOH A 95 1298 95 HOH WAT . E 5 HOH A 96 1299 96 HOH WAT . E 5 HOH A 97 1300 97 HOH WAT . E 5 HOH A 98 1301 98 HOH WAT . E 5 HOH A 99 1302 99 HOH WAT . E 5 HOH A 100 1303 100 HOH WAT . E 5 HOH A 101 1304 101 HOH WAT . E 5 HOH A 102 1305 102 HOH WAT . E 5 HOH A 103 1306 103 HOH WAT . E 5 HOH A 104 1307 104 HOH WAT . E 5 HOH A 105 1308 105 HOH WAT . E 5 HOH A 106 1309 106 HOH WAT . E 5 HOH A 107 1310 107 HOH WAT . E 5 HOH A 108 1311 108 HOH WAT . E 5 HOH A 109 1312 109 HOH WAT . E 5 HOH A 110 1313 110 HOH WAT . E 5 HOH A 111 1314 111 HOH WAT . E 5 HOH A 112 1315 112 HOH WAT . E 5 HOH A 113 1316 113 HOH WAT . E 5 HOH A 114 1317 114 HOH WAT . E 5 HOH A 115 1318 115 HOH WAT . E 5 HOH A 116 1319 116 HOH WAT . E 5 HOH A 117 1320 117 HOH WAT . E 5 HOH A 118 1321 118 HOH WAT . E 5 HOH A 119 1322 119 HOH WAT . E 5 HOH A 120 1323 120 HOH WAT . E 5 HOH A 121 1324 121 HOH WAT . E 5 HOH A 122 1325 122 HOH WAT . E 5 HOH A 123 1326 123 HOH WAT . E 5 HOH A 124 1327 124 HOH WAT . E 5 HOH A 125 1328 125 HOH WAT . E 5 HOH A 126 1329 126 HOH WAT . E 5 HOH A 127 1330 127 HOH WAT . E 5 HOH A 128 1331 128 HOH WAT . E 5 HOH A 129 1332 129 HOH WAT . E 5 HOH A 130 1333 130 HOH WAT . E 5 HOH A 131 1334 131 HOH WAT . E 5 HOH A 132 1335 132 HOH WAT . E 5 HOH A 133 1336 133 HOH WAT . E 5 HOH A 134 1337 134 HOH WAT . E 5 HOH A 135 1338 135 HOH WAT . E 5 HOH A 136 1339 136 HOH WAT . E 5 HOH A 137 1340 137 HOH WAT . E 5 HOH A 138 1341 138 HOH WAT . E 5 HOH A 139 1342 139 HOH WAT . E 5 HOH A 140 1343 140 HOH WAT . E 5 HOH A 141 1344 141 HOH WAT . E 5 HOH A 142 1345 142 HOH WAT . E 5 HOH A 143 1346 143 HOH WAT . E 5 HOH A 144 1347 144 HOH WAT . E 5 HOH A 145 1348 145 HOH WAT . E 5 HOH A 146 1349 146 HOH WAT . E 5 HOH A 147 1350 147 HOH WAT . E 5 HOH A 148 1351 148 HOH WAT . E 5 HOH A 149 1352 149 HOH WAT . E 5 HOH A 150 1353 150 HOH WAT . E 5 HOH A 151 1354 151 HOH WAT . E 5 HOH A 152 1355 152 HOH WAT . E 5 HOH A 153 1356 153 HOH WAT . E 5 HOH A 154 1357 154 HOH WAT . E 5 HOH A 155 1358 155 HOH WAT . E 5 HOH A 156 1359 156 HOH WAT . E 5 HOH A 157 1360 157 HOH WAT . E 5 HOH A 158 1361 158 HOH WAT . E 5 HOH A 159 1362 159 HOH WAT . E 5 HOH A 160 1363 160 HOH WAT . E 5 HOH A 161 1364 161 HOH WAT . E 5 HOH A 162 1365 162 HOH WAT . E 5 HOH A 163 1366 163 HOH WAT . E 5 HOH A 164 1367 164 HOH WAT . E 5 HOH A 165 1368 165 HOH WAT . E 5 HOH A 166 1369 166 HOH WAT . E 5 HOH A 167 1370 167 HOH WAT . E 5 HOH A 168 1371 168 HOH WAT . E 5 HOH A 169 1372 169 HOH WAT . E 5 HOH A 170 1373 170 HOH WAT . E 5 HOH A 171 1374 171 HOH WAT . E 5 HOH A 172 1375 172 HOH WAT . E 5 HOH A 173 1376 173 HOH WAT . E 5 HOH A 174 1377 174 HOH WAT . E 5 HOH A 175 1378 175 HOH WAT . E 5 HOH A 176 1379 176 HOH WAT . E 5 HOH A 177 1380 177 HOH WAT . E 5 HOH A 178 1381 178 HOH WAT . E 5 HOH A 179 1382 179 HOH WAT . E 5 HOH A 180 1383 180 HOH WAT . E 5 HOH A 181 1384 181 HOH WAT . E 5 HOH A 182 1385 182 HOH WAT . E 5 HOH A 183 1386 183 HOH WAT . E 5 HOH A 184 1387 184 HOH WAT . E 5 HOH A 185 1388 185 HOH WAT . E 5 HOH A 186 1389 186 HOH WAT . E 5 HOH A 187 1390 187 HOH WAT . E 5 HOH A 188 1391 188 HOH WAT . E 5 HOH A 189 1392 189 HOH WAT . E 5 HOH A 190 1393 190 HOH WAT . E 5 HOH A 191 1394 191 HOH WAT . E 5 HOH A 192 1395 192 HOH WAT . E 5 HOH A 193 1396 193 HOH WAT . E 5 HOH A 194 1397 194 HOH WAT . E 5 HOH A 195 1398 195 HOH WAT . E 5 HOH A 196 1399 196 HOH WAT . E 5 HOH A 197 1400 197 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . D 4 85.446 -30.695 50.994 1 25.75 ? P 5GP 1202 A 1 HETATM 2 O O1P 5GP . . . D 4 86.238 -31.625 51.804 1 26.25 ? O1P 5GP 1202 A 1 HETATM 3 O O2P 5GP . . . D 4 84.338 -31.363 50.246 1 23.95 ? O2P 5GP 1202 A 1 HETATM 4 O O3P 5GP . . . D 4 84.903 -29.534 51.847 1 24.79 ? O3P 5GP 1202 A 1 HETATM 5 O O5' 5GP . . . D 4 86.301 -29.912 49.943 1 23.33 ? O5' 5GP 1202 A 1 HETATM 6 C C5' 5GP . . . D 4 87.596 -29.455 50.307 1 24.79 ? C5' 5GP 1202 A 1 HETATM 7 C C4' 5GP . . . D 4 88.262 -28.619 49.24 1 23.86 ? C4' 5GP 1202 A 1 HETATM 8 O O4' 5GP . . . D 4 88.86 -29.438 48.141 1 24.38 ? O4' 5GP 1202 A 1 HETATM 9 C C3' 5GP . . . D 4 87.427 -27.538 48.518 1 24.27 ? C3' 5GP 1202 A 1 HETATM 10 O O3' 5GP . . . D 4 88.146 -26.316 48.254 1 26.5 ? O3' 5GP 1202 A 1 HETATM 11 C C2' 5GP . . . D 4 87.031 -28.183 47.225 1 23.52 ? C2' 5GP 1202 A 1 HETATM 12 O O2' 5GP . . . D 4 86.761 -27.26 46.187 1 23.65 ? O2' 5GP 1202 A 1 HETATM 13 C C1' 5GP . . . D 4 88.202 -29.071 46.923 1 22.35 ? C1' 5GP 1202 A 1 HETATM 14 N N9 5GP . . . D 4 87.96 -30.172 45.962 1 22.04 ? N9 5GP 1202 A 1 HETATM 15 C C8 5GP . . . D 4 86.938 -31.085 45.83 1 21.02 ? C8 5GP 1202 A 1 HETATM 16 N N7 5GP . . . D 4 87.057 -31.896 44.806 1 17.78 ? N7 5GP 1202 A 1 HETATM 17 C C5 5GP . . . D 4 88.278 -31.463 44.218 1 18.82 ? C5 5GP 1202 A 1 HETATM 18 C C6 5GP . . . D 4 88.949 -31.954 43.03 1 17.85 ? C6 5GP 1202 A 1 HETATM 19 O O6 5GP . . . D 4 88.602 -32.852 42.263 1 18.63 ? O6 5GP 1202 A 1 HETATM 20 N N1 5GP . . . D 4 90.154 -31.245 42.785 1 16.23 ? N1 5GP 1202 A 1 HETATM 21 C C2 5GP . . . D 4 90.63 -30.209 43.572 1 17.71 ? C2 5GP 1202 A 1 HETATM 22 N N2 5GP . . . D 4 91.788 -29.69 43.134 1 15.25 ? N2 5GP 1202 A 1 HETATM 23 N N3 5GP . . . D 4 90.008 -29.732 44.675 1 17.68 ? N3 5GP 1202 A 1 HETATM 24 C C4 5GP . . . D 4 88.831 -30.42 44.932 1 19.35 ? C4 5GP 1202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #