data_1LVK # _model_server_result.job_id irj3fhWI5YQBpxZ6sMDacg _model_server_result.datetime_utc '2024-11-22 02:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1LVK # _exptl.entry_id 1LVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 544.349 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'(3')-O-N-METHYLANTHRANILOYL-ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LVK _cell.length_a 103.9 _cell.length_b 179.9 _cell.length_c 53.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 186 A THR 186 1_555 B MG MG . A MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 A OG SER 237 A SER 237 1_555 B MG MG . A MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 E O HOH . A HOH 996 1_555 B MG MG . A MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 E O HOH . A HOH 997 1_555 B MG MG . A MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 B MG MG . A MG 998 1_555 C O2B MNT . A MNT 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 B MG MG . A MG 998 1_555 D F3 BEF . A BEF 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc7 C O3B MNT . A MNT 999 1_555 D BE BEF . A BEF 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? # _chem_comp.formula 'C18 H22 N6 O10 P2' _chem_comp.formula_weight 544.349 _chem_comp.id MNT _chem_comp.mon_nstd_flag . _chem_comp.name "2'(3')-O-N-METHYLANTHRANILOYL-ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MANT-ADP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B MNT doub 240 n n PB O2B MNT sing 241 n n PB O3B MNT sing 242 n n PB O3A MNT sing 243 n n O2B HOB2 MNT sing 244 n n O3B HOB3 MNT sing 245 n n PA O1A MNT doub 246 n n PA O2A MNT sing 247 n n PA O3A MNT sing 248 n n PA O5' MNT sing 249 n n O2A HOA2 MNT sing 250 n n O5' C5B MNT sing 251 n n C5B C4B MNT sing 252 n n C5B "H5'1" MNT sing 253 n n C5B "H5'2" MNT sing 254 n n C4B O4' MNT sing 255 n n C4B C3B MNT sing 256 n n C4B H4B MNT sing 257 n n O4' C1B MNT sing 258 n n C3B O3' MNT sing 259 n n C3B C2B MNT sing 260 n n C3B H3B MNT sing 261 n n O3' C' MNT sing 262 n n C2B C1B MNT sing 263 n n C2B "H2'1" MNT sing 264 n n C2B "H2'2" MNT sing 265 n n C1B N9 MNT sing 266 n n C1B H1' MNT sing 267 n n N9 C8 MNT sing 268 n y N9 C4 MNT sing 269 n y C8 N7 MNT doub 270 n y C8 H8 MNT sing 271 n n N7 C5 MNT sing 272 n y C5 C6 MNT sing 273 n y C5 C4 MNT doub 274 n y C6 N6 MNT sing 275 n n C6 N1 MNT doub 276 n y N6 HN61 MNT sing 277 n n N6 HN62 MNT sing 278 n n N1 C2 MNT sing 279 n y C2 N3 MNT doub 280 n y C2 H2 MNT sing 281 n n N3 C4 MNT sing 282 n y C' O1' MNT doub 283 n n C' C1' MNT sing 284 n n C1' C2' MNT doub 285 n y C1' C6' MNT sing 286 n y C2' N2' MNT sing 287 n n C2' C3' MNT sing 288 n y N2' CM' MNT sing 289 n n N2' HN2' MNT sing 290 n n CM' "HM'1" MNT sing 291 n n CM' "HM'2" MNT sing 292 n n CM' "HM'3" MNT sing 293 n n C3' C4' MNT doub 294 n y C3' H3' MNT sing 295 n n C4' C5' MNT sing 296 n y C4' H4' MNT sing 297 n n C5' C6' MNT doub 298 n y C5' H5' MNT sing 299 n n C6' H6' MNT sing 300 n n # _atom_sites.entry_id 1LVK _atom_sites.fract_transf_matrix[1][1] 0.009625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 998 998 MG MG . C 3 MNT A 1 999 999 MNT MNT . D 4 BEF A 1 1000 1000 BEF BEF . E 5 HOH A 1 996 996 HOH HOH . E 5 HOH A 2 997 997 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB MNT . . . C 3 34.085 56.626 21.018 1 14.62 ? PB MNT 999 A 1 HETATM 2 O O1B MNT . . . C 3 33.559 55.258 20.899 1 13.37 ? O1B MNT 999 A 1 HETATM 3 O O2B MNT . . . C 3 33.616 57.638 19.999 1 15.29 ? O2B MNT 999 A 1 HETATM 4 O O3B MNT . . . C 3 33.726 57.173 22.452 1 17.04 ? O3B MNT 999 A 1 HETATM 5 P PA MNT . . . C 3 36.746 57.388 20.062 1 16.85 ? PA MNT 999 A 1 HETATM 6 O O1A MNT . . . C 3 36.534 56.961 18.651 1 14.95 ? O1A MNT 999 A 1 HETATM 7 O O2A MNT . . . C 3 36.706 58.838 20.363 1 13.05 ? O2A MNT 999 A 1 HETATM 8 O O3A MNT . . . C 3 35.765 56.689 21.043 1 15.98 ? O3A MNT 999 A 1 HETATM 9 O O5' MNT . . . C 3 38.151 56.692 20.464 1 16.61 ? O5' MNT 999 A 1 HETATM 10 C C5B MNT . . . C 3 38.669 56.959 21.79 1 17.7 ? C5B MNT 999 A 1 HETATM 11 C C4B MNT . . . C 3 40.159 57.242 21.711 1 14.51 ? C4B MNT 999 A 1 HETATM 12 O O4' MNT . . . C 3 40.771 56.052 21.279 1 20.8 ? O4' MNT 999 A 1 HETATM 13 C C3B MNT . . . C 3 40.668 58.27 20.708 1 33.8 ? C3B MNT 999 A 1 HETATM 14 O O3' MNT . . . C 3 41.018 59.574 21.166 1 40.73 ? O3' MNT 999 A 1 HETATM 15 C C2B MNT . . . C 3 41.403 57.698 19.776 1 29.84 ? C2B MNT 999 A 1 HETATM 16 C C1B MNT . . . C 3 41.693 56.29 20.215 1 20.94 ? C1B MNT 999 A 1 HETATM 17 N N9 MNT . . . C 3 41.289 55.302 19.182 1 29.66 ? N9 MNT 999 A 1 HETATM 18 C C8 MNT . . . C 3 40.07 54.748 18.813 1 23.92 ? C8 MNT 999 A 1 HETATM 19 N N7 MNT . . . C 3 40.117 53.845 17.752 1 23.29 ? N7 MNT 999 A 1 HETATM 20 C C5 MNT . . . C 3 41.48 53.847 17.487 1 34.93 ? C5 MNT 999 A 1 HETATM 21 C C6 MNT . . . C 3 42.172 53.511 16.297 1 23.83 ? C6 MNT 999 A 1 HETATM 22 N N6 MNT . . . C 3 41.945 52.492 15.488 1 16.44 ? N6 MNT 999 A 1 HETATM 23 N N1 MNT . . . C 3 43.531 53.63 16.376 1 23.29 ? N1 MNT 999 A 1 HETATM 24 C C2 MNT . . . C 3 44.077 54.313 17.454 1 33.75 ? C2 MNT 999 A 1 HETATM 25 N N3 MNT . . . C 3 43.497 54.992 18.447 1 26.08 ? N3 MNT 999 A 1 HETATM 26 C C4 MNT . . . C 3 42.177 54.709 18.378 1 29.6 ? C4 MNT 999 A 1 HETATM 27 C C' MNT . . . C 3 40.875 60.741 20.41 1 28.98 ? C' MNT 999 A 1 HETATM 28 O O1' MNT . . . C 3 40.685 60.531 19.232 1 100 ? O1' MNT 999 A 1 HETATM 29 C C1' MNT . . . C 3 41.757 61.945 20.758 1 100 ? C1' MNT 999 A 1 HETATM 30 C C2' MNT . A . C 3 41.444 62.962 19.761 0.5 100 ? C2' MNT 999 A 1 HETATM 31 C C2' MNT . B . C 3 42.216 62.343 22.073 0.5 36.67 ? C2' MNT 999 A 1 HETATM 32 N N2' MNT . A . C 3 41.397 62.82 18.406 0.5 19.93 ? N2' MNT 999 A 1 HETATM 33 N N2' MNT . B . C 3 43.06 61.637 22.868 0.5 43.39 ? N2' MNT 999 A 1 HETATM 34 C CM' MNT . A . C 3 41.217 63.95 17.532 0.5 18.38 ? CM' MNT 999 A 1 HETATM 35 C CM' MNT . B . C 3 44.186 62.249 23.513 0.5 12.89 ? CM' MNT 999 A 1 HETATM 36 C C3' MNT . A . C 3 41.494 64.334 20.208 0.5 100 ? C3' MNT 999 A 1 HETATM 37 C C3' MNT . B . C 3 42.208 63.712 22.466 0.5 44.01 ? C3' MNT 999 A 1 HETATM 38 C C4' MNT . . . C 3 41.801 64.725 21.529 1 37.44 ? C4' MNT 999 A 1 HETATM 39 C C5' MNT . A . C 3 42.208 63.712 22.466 0.5 44.01 ? C5' MNT 999 A 1 HETATM 40 C C5' MNT . B . C 3 41.494 64.334 20.208 0.5 100 ? C5' MNT 999 A 1 HETATM 41 C C6' MNT . A . C 3 42.216 62.343 22.073 0.5 36.67 ? C6' MNT 999 A 1 HETATM 42 C C6' MNT . B . C 3 41.444 62.962 19.761 0.5 100 ? C6' MNT 999 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #