data_1LW7 # _model_server_result.job_id ZMo0gUeraxwA9f3wKlqAlw _model_server_result.datetime_utc '2024-11-02 03:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":605}' # _entry.id 1LW7 # _exptl.entry_id 1LW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LW7 _cell.length_a 106.871 _cell.length_b 106.871 _cell.length_c 174.945 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_765 -x+2,-y+1,z -1 0 0 0 -1 0 0 0 1 160.3065 92.553001 0 3 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 160.3065 92.553001 116.63 4 'crystal symmetry operation' 12_555 x,x-y,-z+2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 116.63 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 20 A ASN 76 1_555 A N MSE 21 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 21 A MSE 77 1_555 A N ILE 22 A ILE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C LYS 51 A LYS 107 1_555 A N MSE 52 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 52 A MSE 108 1_555 A N LYS 53 A LYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C ARG 54 A ARG 110 1_555 A N MSE 55 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale6 A C MSE 55 A MSE 111 1_555 A N PRO 56 A PRO 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 A C TRP 64 A TRP 120 1_555 A N MSE 65 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale8 A C MSE 65 A MSE 121 1_555 A N GLN 66 A GLN 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C GLN 225 A GLN 281 1_555 A N MSE 226 A MSE 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 226 A MSE 282 1_555 A N ALA 227 A ALA 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 A C SER 271 A SER 327 1_555 A N MSE 272 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 A C MSE 272 A MSE 328 1_555 A N ILE 273 A ILE 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 254 n n PA O2A NAD sing 255 n n PA O5B NAD sing 256 n n PA O3 NAD sing 257 n n O2A HOA2 NAD sing 258 n n O5B C5B NAD sing 259 n n C5B C4B NAD sing 260 n n C5B H51A NAD sing 261 n n C5B H52A NAD sing 262 n n C4B O4B NAD sing 263 n n C4B C3B NAD sing 264 n n C4B H4B NAD sing 265 n n O4B C1B NAD sing 266 n n C3B O3B NAD sing 267 n n C3B C2B NAD sing 268 n n C3B H3B NAD sing 269 n n O3B HO3A NAD sing 270 n n C2B O2B NAD sing 271 n n C2B C1B NAD sing 272 n n C2B H2B NAD sing 273 n n O2B HO2A NAD sing 274 n n C1B N9A NAD sing 275 n n C1B H1B NAD sing 276 n n N9A C8A NAD sing 277 n y N9A C4A NAD sing 278 n y C8A N7A NAD doub 279 n y C8A H8A NAD sing 280 n n N7A C5A NAD sing 281 n y C5A C6A NAD sing 282 n y C5A C4A NAD doub 283 n y C6A N6A NAD sing 284 n n C6A N1A NAD doub 285 n y N6A H61A NAD sing 286 n n N6A H62A NAD sing 287 n n N1A C2A NAD sing 288 n y C2A N3A NAD doub 289 n y C2A H2A NAD sing 290 n n N3A C4A NAD sing 291 n y O3 PN NAD sing 292 n n PN O1N NAD doub 293 n n PN O2N NAD sing 294 n n PN O5D NAD sing 295 n n O5D C5D NAD sing 296 n n C5D C4D NAD sing 297 n n C5D H51N NAD sing 298 n n C5D H52N NAD sing 299 n n C4D O4D NAD sing 300 n n C4D C3D NAD sing 301 n n C4D H4D NAD sing 302 n n O4D C1D NAD sing 303 n n C3D O3D NAD sing 304 n n C3D C2D NAD sing 305 n n C3D H3D NAD sing 306 n n O3D HO3N NAD sing 307 n n C2D O2D NAD sing 308 n n C2D C1D NAD sing 309 n n C2D H2D NAD sing 310 n n O2D HO2N NAD sing 311 n n C1D N1N NAD sing 312 n n C1D H1D NAD sing 313 n n N1N C2N NAD sing 314 n y N1N C6N NAD doub 315 n y C2N C3N NAD doub 316 n y C2N H2N NAD sing 317 n n C3N C7N NAD sing 318 n n C3N C4N NAD sing 319 n y C7N O7N NAD doub 320 n n C7N N7N NAD sing 321 n n N7N H71N NAD sing 322 n n N7N H72N NAD sing 323 n n C4N C5N NAD doub 324 n y C4N H4N NAD sing 325 n n C5N C6N NAD sing 326 n y C5N H5N NAD sing 327 n n C6N H6N NAD sing 328 n n # _atom_sites.entry_id 1LW7 _atom_sites.fract_transf_matrix[1][1] 0.009357 _atom_sites.fract_transf_matrix[1][2] 0.005402 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010805 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 2 SO4 A 1 603 603 SO4 SO4 . D 2 SO4 A 1 604 604 SO4 SO4 . E 2 SO4 A 1 606 606 SO4 SO4 . F 2 SO4 A 1 607 607 SO4 SO4 . G 3 NAD A 1 601 601 NAD NAD . H 3 NAD A 1 605 605 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . H 3 74.222 53.935 52.864 1 86.23 ? PA NAD 605 A 1 HETATM 2 O O1A NAD . . . H 3 73.983 54.11 51.395 1 84.17 ? O1A NAD 605 A 1 HETATM 3 O O2A NAD . . . H 3 75.657 54.031 53.254 1 87.03 ? O2A NAD 605 A 1 HETATM 4 O O5B NAD . . . H 3 73.79 52.48 53.33 1 83.89 ? O5B NAD 605 A 1 HETATM 5 C C5B NAD . . . H 3 74.532 51.27 53.04 1 80.3 ? C5B NAD 605 A 1 HETATM 6 C C4B NAD . . . H 3 73.907 50.386 54.075 1 78.27 ? C4B NAD 605 A 1 HETATM 7 O O4B NAD . . . H 3 72.604 49.944 53.619 1 76.1 ? O4B NAD 605 A 1 HETATM 8 C C3B NAD . . . H 3 74.709 49.135 54.38 1 76.27 ? C3B NAD 605 A 1 HETATM 9 O O3B NAD . . . H 3 74.869 48.958 55.813 1 76.52 ? O3B NAD 605 A 1 HETATM 10 C C2B NAD . . . H 3 73.896 48.069 53.693 1 75.34 ? C2B NAD 605 A 1 HETATM 11 O O2B NAD . . . H 3 73.993 46.832 54.386 1 75.73 ? O2B NAD 605 A 1 HETATM 12 C C1B NAD . . . H 3 72.458 48.598 53.705 1 74.19 ? C1B NAD 605 A 1 HETATM 13 N N9A NAD . . . H 3 71.749 48.203 52.524 1 70.29 ? N9A NAD 605 A 1 HETATM 14 C C8A NAD . . . H 3 72.247 48.134 51.27 1 69.43 ? C8A NAD 605 A 1 HETATM 15 N N7A NAD . . . H 3 71.363 47.732 50.372 1 69.66 ? N7A NAD 605 A 1 HETATM 16 C C5A NAD . . . H 3 70.236 47.536 51.125 1 68.18 ? C5A NAD 605 A 1 HETATM 17 C C6A NAD . . . H 3 68.931 47.101 50.772 1 67.73 ? C6A NAD 605 A 1 HETATM 18 N N6A NAD . . . H 3 68.543 46.773 49.542 1 66.04 ? N6A NAD 605 A 1 HETATM 19 N N1A NAD . . . H 3 68.012 47.013 51.785 1 69.44 ? N1A NAD 605 A 1 HETATM 20 C C2A NAD . . . H 3 68.401 47.348 53.059 1 66.79 ? C2A NAD 605 A 1 HETATM 21 N N3A NAD . . . H 3 69.584 47.75 53.454 1 66.53 ? N3A NAD 605 A 1 HETATM 22 C C4A NAD . . . H 3 70.457 47.828 52.454 1 68.31 ? C4A NAD 605 A 1 HETATM 23 O O3 NAD . . . H 3 73.321 54.949 53.685 1 81.36 ? O3 NAD 605 A 1 HETATM 24 P PN NAD . . . H 3 73.173 54.865 55.276 1 80.37 ? PN NAD 605 A 1 HETATM 25 O O1N NAD . . . H 3 73.173 56.15 56.039 1 78.61 ? O1N NAD 605 A 1 HETATM 26 O O2N NAD . . . H 3 74.235 53.911 55.741 1 81.02 ? O2N NAD 605 A 1 HETATM 27 O O5D NAD . . . H 3 71.686 54.286 55.328 1 79.08 ? O5D NAD 605 A 1 HETATM 28 C C5D NAD . . . H 3 71.303 53.402 56.434 1 76.28 ? C5D NAD 605 A 1 HETATM 29 C C4D NAD . . . H 3 69.85 52.976 56.275 1 76.61 ? C4D NAD 605 A 1 HETATM 30 O O4D NAD . . . H 3 69.382 53.168 54.907 1 74.88 ? O4D NAD 605 A 1 HETATM 31 C C3D NAD . . . H 3 69.581 51.51 56.612 1 75.84 ? C3D NAD 605 A 1 HETATM 32 O O3D NAD . . . H 3 68.3 51.338 57.28 1 75.03 ? O3D NAD 605 A 1 HETATM 33 C C2D NAD . . . H 3 69.51 50.879 55.283 1 75.25 ? C2D NAD 605 A 1 HETATM 34 O O2D NAD . . . H 3 68.725 49.684 55.359 1 81.45 ? O2D NAD 605 A 1 HETATM 35 C C1D NAD . . . H 3 68.861 51.944 54.438 1 72.66 ? C1D NAD 605 A 1 HETATM 36 N N1N NAD . . . H 3 69.156 51.718 53.032 1 68.67 ? N1N NAD 605 A 1 HETATM 37 C C2N NAD . . . H 3 68.212 51.06 52.237 1 67.81 ? C2N NAD 605 A 1 HETATM 38 C C3N NAD . . . H 3 68.445 50.785 50.836 1 65.68 ? C3N NAD 605 A 1 HETATM 39 C C7N NAD . . . H 3 67.366 50.063 50.1 1 67.19 ? C7N NAD 605 A 1 HETATM 40 O O7N NAD . . . H 3 67.65 49.851 48.9 1 65.85 ? O7N NAD 605 A 1 HETATM 41 N N7N NAD . . . H 3 66.177 49.655 50.668 1 67.51 ? N7N NAD 605 A 1 HETATM 42 C C4N NAD . . . H 3 69.709 51.218 50.244 1 65.13 ? C4N NAD 605 A 1 HETATM 43 C C5N NAD . . . H 3 70.676 51.92 51.163 1 64.78 ? C5N NAD 605 A 1 HETATM 44 C C6N NAD . . . H 3 70.376 52.122 52.426 1 66.04 ? C6N NAD 605 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 44 #