data_1LWF # _model_server_result.job_id gCy2MqM9tNijIyZ14xPN7Q _model_server_result.datetime_utc '2024-10-26 12:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1LWF # _exptl.entry_id 1LWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LWF _cell.length_a 137.9 _cell.length_b 109.5 _cell.length_c 74.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # _atom_sites.entry_id 1LWF _atom_sites.fract_transf_matrix[1][1] 0.007252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NVP A 1 999 999 NVP NVP . D 4 HOH A 1 1001 1001 HOH WAT . D 4 HOH A 2 1002 1002 HOH WAT . D 4 HOH A 3 1003 1003 HOH WAT . D 4 HOH A 4 1004 1004 HOH WAT . D 4 HOH A 5 1005 1005 HOH WAT . D 4 HOH A 6 1006 1006 HOH WAT . D 4 HOH A 7 1008 1008 HOH WAT . D 4 HOH A 8 1009 1009 HOH WAT . D 4 HOH A 9 1010 1010 HOH WAT . E 4 HOH B 1 1007 1007 HOH WAT . E 4 HOH B 2 1011 1011 HOH WAT . E 4 HOH B 3 1012 1012 HOH WAT . E 4 HOH B 4 1013 1013 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . C 3 -0.251 -35.292 24.13 1 42.87 ? N1 NVP 999 A 1 HETATM 2 C CA NVP . . . C 3 0.327 -36.561 23.643 1 37.11 ? CA NVP 999 A 1 HETATM 3 C CB NVP . . . C 3 0.745 -37.535 24.681 1 39.28 ? CB NVP 999 A 1 HETATM 4 C CC NVP . . . C 3 -0.473 -37.786 23.868 1 44.53 ? CC NVP 999 A 1 HETATM 5 N N3 NVP . . . C 3 1.968 -34.527 24.401 1 65.62 ? N3 NVP 999 A 1 HETATM 6 C C4 NVP . . . C 3 2.861 -33.764 25.081 1 67.82 ? C4 NVP 999 A 1 HETATM 7 C C5 NVP . . . C 3 2.473 -32.891 26.111 1 55.53 ? C5 NVP 999 A 1 HETATM 8 C C6 NVP . . . C 3 1.129 -32.8 26.437 1 57.1 ? C6 NVP 999 A 1 HETATM 9 C CD NVP . . . C 3 0.678 -31.872 27.525 1 48.61 ? CD NVP 999 A 1 HETATM 10 C C2 NVP . . . C 3 0.666 -34.435 24.735 1 50.41 ? C2 NVP 999 A 1 HETATM 11 C C7 NVP . . . C 3 0.203 -33.573 25.74 1 58.18 ? C7 NVP 999 A 1 HETATM 12 N N8 NVP . . . C 3 -1.199 -33.46 26.046 1 55.11 ? N8 NVP 999 A 1 HETATM 13 C C9 NVP . . . C 3 -2.308 -33.537 25.297 1 49.36 ? C9 NVP 999 A 1 HETATM 14 O OE NVP . . . C 3 -3.416 -33.348 25.788 1 50.48 ? OE NVP 999 A 1 HETATM 15 C C10 NVP . . . C 3 -2.218 -33.797 23.804 1 49.5 ? C10 NVP 999 A 1 HETATM 16 C C15 NVP . . . C 3 -1.207 -34.635 23.242 1 46.72 ? C15 NVP 999 A 1 HETATM 17 C C11 NVP . . . C 3 -3.17 -33.225 22.956 1 48.76 ? C11 NVP 999 A 1 HETATM 18 C C12 NVP . . . C 3 -3.102 -33.48 21.58 1 56.44 ? C12 NVP 999 A 1 HETATM 19 C C13 NVP . . . C 3 -2.071 -34.31 21.088 1 50.23 ? C13 NVP 999 A 1 HETATM 20 N N14 NVP . . . C 3 -1.141 -34.874 21.907 1 55.13 ? N14 NVP 999 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 209 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #