data_1LWI
#
_model_server_result.job_id            FmeyVPiAJsEssDQjTzEg1Q 
_model_server_result.datetime_utc      '2024-11-24 05:50:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lwi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":350}' 
#
_entry.id    1LWI 
#
_exptl.entry_id    1LWI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.5 
_cell.angle_gamma         90 
_cell.entry_id            1LWI 
_cell.length_a            46.9 
_cell.length_b            139.1 
_cell.length_c            53.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LWI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     1LWI 
_atom_sites.fract_transf_matrix[1][1]    0.021322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.009271 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007189 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 350 350 NAP NAP . 
D 2 NAP B 1 350 350 NAP NAP . 
E 3 HOH A 1 351 351 HOH HOH . 
F 3 HOH B 1 351 351 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . A . C 2 -13.245 -22.146 52.306 0.65 29 ? PA NAP 350 A 1 
HETATM 2 P PA NAP . B . C 2 -14.843 -25.373 51.248 0.3 29 ? PA NAP 350 A 1 
HETATM 3 O O1A NAP . A . C 2 -11.945 -21.771 52.898 0.65 29 ? O1A NAP 350 A 1 
HETATM 4 O O1A NAP . B . C 2 -16.263 -24.987 51.144 0.3 29 ? O1A NAP 350 A 1 
HETATM 5 O O2A NAP . A . C 2 -14.379 -21.162 52.344 0.65 29 ? O2A NAP 350 A 1 
HETATM 6 O O2A NAP . B . C 2 -14.486 -26.805 51.32 0.3 29 ? O2A NAP 350 A 1 
HETATM 7 O O5B NAP . A . C 2 -13.685 -23.489 53.033 0.65 29 ? O5B NAP 350 A 1 
HETATM 8 O O5B NAP . B . C 2 -14.223 -24.616 52.521 0.3 29 ? O5B NAP 350 A 1 
HETATM 9 C C5B NAP . A . C 2 -15.105 -23.695 53.27 0.65 29 ? C5B NAP 350 A 1 
HETATM 10 C C5B NAP . B . C 2 -15.018 -23.617 53.181 0.3 29 ? C5B NAP 350 A 1 
HETATM 11 C C4B NAP . A . C 2 -15.287 -24.006 54.746 0.65 29 ? C4B NAP 350 A 1 
HETATM 12 C C4B NAP . B . C 2 -15.186 -23.972 54.649 0.3 29 ? C4B NAP 350 A 1 
HETATM 13 O O4B NAP . A . C 2 -15.56 -22.842 55.543 0.65 29 ? O4B NAP 350 A 1 
HETATM 14 O O4B NAP . B . C 2 -15.509 -22.817 55.442 0.3 29 ? O4B NAP 350 A 1 
HETATM 15 C C3B NAP . A . C 2 -16.455 -24.939 54.916 0.65 29 ? C3B NAP 350 A 1 
HETATM 16 C C3B NAP . B . C 2 -16.284 -24.994 54.894 0.3 29 ? C3B NAP 350 A 1 
HETATM 17 O O3B NAP . A . C 2 -15.979 -26.11 55.587 0.65 29 ? O3B NAP 350 A 1 
HETATM 18 O O3B NAP . B . C 2 -15.765 -26.071 55.684 0.3 29 ? O3B NAP 350 A 1 
HETATM 19 C C2B NAP . A . C 2 -17.437 -24.219 55.814 0.65 29 ? C2B NAP 350 A 1 
HETATM 20 C C2B NAP . B . C 2 -17.346 -24.251 55.686 0.3 29 ? C2B NAP 350 A 1 
HETATM 21 O O2B NAP . A . C 2 -17.956 -25.264 56.657 0.65 29 ? O2B NAP 350 A 1 
HETATM 22 O O2B NAP . B . C 2 -17.957 -25.216 56.563 0.3 29 ? O2B NAP 350 A 1 
HETATM 23 C C1B NAP . A . C 2 -16.553 -23.198 56.53 0.65 29 ? C1B NAP 350 A 1 
HETATM 24 C C1B NAP . B . C 2 -16.509 -23.199 56.404 0.3 29 ? C1B NAP 350 A 1 
HETATM 25 N N9A NAP . A . C 2 -17.277 -21.932 56.817 0.65 29 ? N9A NAP 350 A 1 
HETATM 26 N N9A NAP . B . C 2 -17.278 -21.973 56.733 0.3 29 ? N9A NAP 350 A 1 
HETATM 27 C C8A NAP . A . C 2 -18.104 -21.33 55.961 0.65 29 ? C8A NAP 350 A 1 
HETATM 28 C C8A NAP . B . C 2 -18.135 -21.362 55.915 0.3 29 ? C8A NAP 350 A 1 
HETATM 29 N N7A NAP . A . C 2 -18.642 -20.247 56.522 0.65 29 ? N7A NAP 350 A 1 
HETATM 30 N N7A NAP . B . C 2 -18.68 -20.312 56.527 0.3 29 ? N7A NAP 350 A 1 
HETATM 31 C C5A NAP . A . C 2 -18.134 -20.142 57.74 0.65 29 ? C5A NAP 350 A 1 
HETATM 32 C C5A NAP . B . C 2 -18.15 -20.24 57.74 0.3 29 ? C5A NAP 350 A 1 
HETATM 33 C C6A NAP . A . C 2 -18.314 -19.214 58.771 0.65 29 ? C6A NAP 350 A 1 
HETATM 34 C C6A NAP . B . C 2 -18.322 -19.363 58.817 0.3 29 ? C6A NAP 350 A 1 
HETATM 35 N N6A NAP . A . C 2 -19.305 -18.322 58.764 0.65 29 ? N6A NAP 350 A 1 
HETATM 36 N N6A NAP . B . C 2 -19.281 -18.44 58.84 0.3 29 ? N6A NAP 350 A 1 
HETATM 37 N N1A NAP . A . C 2 -17.596 -19.386 59.906 0.65 29 ? N1A NAP 350 A 1 
HETATM 38 N N1A NAP . B . C 2 -17.583 -19.569 59.932 0.3 29 ? N1A NAP 350 A 1 
HETATM 39 C C2A NAP . A . C 2 -16.77 -20.416 60.051 0.65 29 ? C2A NAP 350 A 1 
HETATM 40 C C2A NAP . B . C 2 -16.731 -20.582 60.016 0.3 29 ? C2A NAP 350 A 1 
HETATM 41 N N3A NAP . A . C 2 -16.6 -21.317 59.096 0.65 29 ? N3A NAP 350 A 1 
HETATM 42 N N3A NAP . B . C 2 -16.562 -21.434 59.017 0.3 29 ? N3A NAP 350 A 1 
HETATM 43 C C4A NAP . A . C 2 -17.26 -21.205 57.935 0.65 29 ? C4A NAP 350 A 1 
HETATM 44 C C4A NAP . B . C 2 -17.25 -21.289 57.876 0.3 29 ? C4A NAP 350 A 1 
HETATM 45 O O3 NAP . A . C 2 -13.038 -22.573 50.76 0.65 29 ? O3 NAP 350 A 1 
HETATM 46 O O3 NAP . B . C 2 -14.103 -24.732 49.978 0.3 29 ? O3 NAP 350 A 1 
HETATM 47 P PN NAP . A . C 2 -13.367 -23.906 49.896 0.65 29 ? PN NAP 350 A 1 
HETATM 48 P PN NAP . B . C 2 -12.889 -23.715 49.717 0.3 29 ? PN NAP 350 A 1 
HETATM 49 O O1N NAP . A . C 2 -14.511 -24.62 50.505 0.65 29 ? O1N NAP 350 A 1 
HETATM 50 O O1N NAP . B . C 2 -11.68 -24.515 49.417 0.3 29 ? O1N NAP 350 A 1 
HETATM 51 O O2N NAP . A . C 2 -12.1 -24.647 49.682 0.65 29 ? O2N NAP 350 A 1 
HETATM 52 O O2N NAP . B . C 2 -12.839 -22.713 50.806 0.3 29 ? O2N NAP 350 A 1 
HETATM 53 O O5D NAP . A . C 2 -13.779 -23.233 48.525 0.65 29 ? O5D NAP 350 A 1 
HETATM 54 O O5D NAP . B . C 2 -13.358 -22.984 48.367 0.3 29 ? O5D NAP 350 A 1 
HETATM 55 C C5D NAP . A . C 2 -14.996 -22.51 48.394 0.65 29 ? C5D NAP 350 A 1 
HETATM 56 C C5D NAP . B . C 2 -14.63 -22.328 48.3 0.3 29 ? C5D NAP 350 A 1 
HETATM 57 C C4D NAP . A . C 2 -15.221 -22.389 46.9 0.65 29 ? C4D NAP 350 A 1 
HETATM 58 C C4D NAP . B . C 2 -14.982 -22.253 46.827 0.3 29 ? C4D NAP 350 A 1 
HETATM 59 O O4D NAP . A . C 2 -13.989 -21.964 46.28 0.65 29 ? O4D NAP 350 A 1 
HETATM 60 O O4D NAP . B . C 2 -13.823 -21.826 46.087 0.3 29 ? O4D NAP 350 A 1 
HETATM 61 C C3D NAP . A . C 2 -15.517 -23.717 46.224 0.65 29 ? C3D NAP 350 A 1 
HETATM 62 C C3D NAP . B . C 2 -15.324 -23.615 46.255 0.3 29 ? C3D NAP 350 A 1 
HETATM 63 O O3D NAP . A . C 2 -16.87 -24.169 46.333 0.65 29 ? O3D NAP 350 A 1 
HETATM 64 O O3D NAP . B . C 2 -16.691 -23.985 46.439 0.3 29 ? O3D NAP 350 A 1 
HETATM 65 C C2D NAP . A . C 2 -15.212 -23.327 44.79 0.65 29 ? C2D NAP 350 A 1 
HETATM 66 C C2D NAP . B . C 2 -15.088 -23.346 44.784 0.3 29 ? C2D NAP 350 A 1 
HETATM 67 O O2D NAP . A . C 2 -16.272 -22.493 44.326 0.65 29 ? O2D NAP 350 A 1 
HETATM 68 O O2D NAP . B . C 2 -16.204 -22.597 44.297 0.3 29 ? O2D NAP 350 A 1 
HETATM 69 C C1D NAP . A . C 2 -13.955 -22.499 44.938 0.65 29 ? C1D NAP 350 A 1 
HETATM 70 C C1D NAP . B . C 2 -13.838 -22.491 44.808 0.3 29 ? C1D NAP 350 A 1 
HETATM 71 N N1N NAP . A . C 2 -12.74 -23.306 44.696 0.65 29 ? N1N NAP 350 A 1 
HETATM 72 N N1N NAP . B . C 2 -12.615 -23.297 44.59 0.3 29 ? N1N NAP 350 A 1 
HETATM 73 C C2N NAP . A . C 2 -12.033 -23.148 43.493 0.65 29 ? C2N NAP 350 A 1 
HETATM 74 C C2N NAP . B . C 2 -11.905 -23.141 43.393 0.3 29 ? C2N NAP 350 A 1 
HETATM 75 C C3N NAP . A . C 2 -10.823 -23.814 43.296 0.65 29 ? C3N NAP 350 A 1 
HETATM 76 C C3N NAP . B . C 2 -10.724 -23.846 43.178 0.3 29 ? C3N NAP 350 A 1 
HETATM 77 C C7N NAP . A . C 2 -9.976 -23.587 42.034 0.65 29 ? C7N NAP 350 A 1 
HETATM 78 C C7N NAP . B . C 2 -9.91 -23.621 41.897 0.3 29 ? C7N NAP 350 A 1 
HETATM 79 O O7N NAP . A . C 2 -9.125 -24.407 41.699 0.65 29 ? O7N NAP 350 A 1 
HETATM 80 O O7N NAP . B . C 2 -9.04 -24.419 41.556 0.3 29 ? O7N NAP 350 A 1 
HETATM 81 N N7N NAP . A . C 2 -10.229 -22.47 41.353 0.65 29 ? N7N NAP 350 A 1 
HETATM 82 N N7N NAP . B . C 2 -10.221 -22.527 41.207 0.3 29 ? N7N NAP 350 A 1 
HETATM 83 C C4N NAP . A . C 2 -10.34 -24.651 44.304 0.65 29 ? C4N NAP 350 A 1 
HETATM 84 C C4N NAP . B . C 2 -10.26 -24.721 44.16 0.3 29 ? C4N NAP 350 A 1 
HETATM 85 C C5N NAP . A . C 2 -11.036 -24.818 45.5 0.65 29 ? C5N NAP 350 A 1 
HETATM 86 C C5N NAP . B . C 2 -10.96 -24.887 45.354 0.3 29 ? C5N NAP 350 A 1 
HETATM 87 C C6N NAP . A . C 2 -12.236 -24.146 45.7 0.65 29 ? C6N NAP 350 A 1 
HETATM 88 C C6N NAP . B . C 2 -12.136 -24.176 45.574 0.3 29 ? C6N NAP 350 A 1 
HETATM 89 P P2B NAP . A . C 2 -19.422 -25.188 57.346 0.65 29 ? P2B NAP 350 A 1 
HETATM 90 P P2B NAP . B . C 2 -19.511 -25.153 57.009 0.3 29 ? P2B NAP 350 A 1 
HETATM 91 O O1X NAP . A . C 2 -20.492 -25.307 56.324 0.65 29 ? O1X NAP 350 A 1 
HETATM 92 O O1X NAP . B . C 2 -20.384 -25.287 55.822 0.3 29 ? O1X NAP 350 A 1 
HETATM 93 O O2X NAP . A . C 2 -19.425 -26.09 58.532 0.65 29 ? O2X NAP 350 A 1 
HETATM 94 O O2X NAP . B . C 2 -19.711 -26.081 58.151 0.3 29 ? O2X NAP 350 A 1 
HETATM 95 O O3X NAP . A . C 2 -19.431 -23.674 57.893 0.65 29 ? O3X NAP 350 A 1 
HETATM 96 O O3X NAP . B . C 2 -19.652 -23.652 57.569 0.3 29 ? O3X NAP 350 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           96 
#