data_1LWJ # _model_server_result.job_id TN4DkVZ-N5TlleXNt6Ac1Q _model_server_result.datetime_utc '2024-11-30 12:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":988}' # _entry.id 1LWJ # _exptl.entry_id 1LWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 791.746 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'MODIFIED ACARBOSE PENTASACCHARIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LWJ _cell.length_a 94.542 _cell.length_b 181.354 _cell.length_c 197.317 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 D CA CA . A CA 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc2 A OD1 ASN 15 A ASN 15 1_555 D CA CA . A CA 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 A OD2 ASP 17 A ASP 17 1_555 D CA CA . A CA 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc4 A OD1 ASP 17 A ASP 17 1_555 D CA CA . A CA 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc5 A O VAL 19 A VAL 19 1_555 D CA CA . A CA 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 A OD2 ASP 21 A ASP 21 1_555 D CA CA . A CA 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 F CA CA . B CA 10 1_555 B OD1 ASP 13 B ASP 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc8 F CA CA . B CA 10 1_555 B OD1 ASN 15 B ASN 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc9 F CA CA . B CA 10 1_555 B ND2 ASN 15 B ASN 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc10 F CA CA . B CA 10 1_555 B OD1 ASP 17 B ASP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc11 F CA CA . B CA 10 1_555 B OD2 ASP 17 B ASP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc12 F CA CA . B CA 10 1_555 B O VAL 19 B VAL 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 F CA CA . B CA 10 1_555 B OD2 ASP 21 B ASP 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? # _chem_comp.formula 'C31 H53 N O22' _chem_comp.formula_weight 791.746 _chem_comp.id ACG _chem_comp.mon_nstd_flag . _chem_comp.name 'MODIFIED ACARBOSE PENTASACCHARIDE' _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1A C2A ACG sing 1 n n C1A C7A ACG sing 2 n n C1A N4B ACG sing 3 n n C1A H1A ACG sing 4 n n C2A C3A ACG sing 5 n n C2A O2A ACG sing 6 n n C2A H2A ACG sing 7 n n C3A C4A ACG sing 8 n n C3A O3A ACG sing 9 n n C3A H3A ACG sing 10 n n C4A C5A ACG sing 11 n n C4A O4A ACG sing 12 n n C4A H4A ACG sing 13 n n C5A C6A ACG sing 14 n n C5A C7A ACG doub 15 n n C6A O6A ACG sing 16 n n C6A H6A1 ACG sing 17 n n C6A H6A2 ACG sing 18 n n C7A H7A ACG sing 19 n n O2A HOA2 ACG sing 20 n n O3A HOA3 ACG sing 21 n n O4A C1E ACG sing 22 n n O6A HOA6 ACG sing 23 n n C1B C2B ACG sing 24 n n C1B O5B ACG sing 25 n n C1B O4C ACG sing 26 n n C1B H1B ACG sing 27 n n C2B C3B ACG sing 28 n n C2B O2B ACG sing 29 n n C2B H2B ACG sing 30 n n C3B C4B ACG sing 31 n n C3B O3B ACG sing 32 n n C3B H3B ACG sing 33 n n C4B C5B ACG sing 34 n n C4B N4B ACG sing 35 n n C4B H4B ACG sing 36 n n C5B C6B ACG sing 37 n n C5B O5B ACG sing 38 n n C5B H5B ACG sing 39 n n C6B H6B1 ACG sing 40 n n C6B H6B2 ACG sing 41 n n C6B H6B3 ACG sing 42 n n N4B HN4 ACG sing 43 n n O2B HOB2 ACG sing 44 n n O3B HOB3 ACG sing 45 n n C1C C2C ACG sing 46 n n C1C O5C ACG sing 47 n n C1C O4D ACG sing 48 n n C1C H1C ACG sing 49 n n C2C C3C ACG sing 50 n n C2C O2C ACG sing 51 n n C2C H2C ACG sing 52 n n C3C C4C ACG sing 53 n n C3C O3C ACG sing 54 n n C3C H3C ACG sing 55 n n C4C C5C ACG sing 56 n n C4C O4C ACG sing 57 n n C4C H4C ACG sing 58 n n C5C C6C ACG sing 59 n n C5C O5C ACG sing 60 n n C5C H5C ACG sing 61 n n C6C O6C ACG sing 62 n n C6C H6C1 ACG sing 63 n n C6C H6C2 ACG sing 64 n n O2C HOC2 ACG sing 65 n n O3C HOC3 ACG sing 66 n n O6C HOC6 ACG sing 67 n n C1D C2D ACG sing 68 n n C1D O1D ACG sing 69 n n C1D O5D ACG sing 70 n n C1D H1D ACG sing 71 n n C2D C3D ACG sing 72 n n C2D O2D ACG sing 73 n n C2D H2D ACG sing 74 n n C3D C4D ACG sing 75 n n C3D O3D ACG sing 76 n n C3D H3D ACG sing 77 n n C4D C5D ACG sing 78 n n C4D O4D ACG sing 79 n n C4D H4D ACG sing 80 n n C5D C6D ACG sing 81 n n C5D O5D ACG sing 82 n n C5D H5D ACG sing 83 n n C6D O6D ACG sing 84 n n C6D H6D1 ACG sing 85 n n C6D H6D2 ACG sing 86 n n O1D HOD1 ACG sing 87 n n O2D HOD2 ACG sing 88 n n O3D HOD3 ACG sing 89 n n O6D HOD6 ACG sing 90 n n C1E C2E ACG sing 91 n n C1E O5E ACG sing 92 n n C1E H1E ACG sing 93 n n C2E C3E ACG sing 94 n n C2E O2E ACG sing 95 n n C2E H2E ACG sing 96 n n C3E C4E ACG sing 97 n n C3E O3E ACG sing 98 n n C3E H3E ACG sing 99 n n C4E C5E ACG sing 100 n n C4E O4E ACG sing 101 n n C4E H4E ACG sing 102 n n C5E C6E ACG sing 103 n n C5E O5E ACG sing 104 n n C5E H5E ACG sing 105 n n C6E H6E1 ACG sing 106 n n C6E H6E2 ACG sing 107 n n C6E H6E3 ACG sing 108 n n O2E HOE2 ACG sing 109 n n O3E HOE3 ACG sing 110 n n O4E HOE4 ACG sing 111 n n # _atom_sites.entry_id 1LWJ _atom_sites.fract_transf_matrix[1][1] 0.010577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACG A 1 989 989 ACG ACR . D 3 CA A 1 883 4 CA CA . E 2 ACG B 1 988 988 ACG ACR . F 3 CA B 1 10 10 CA CA . G 4 HOH A 1 990 1 HOH WAT . G 4 HOH A 2 991 2 HOH WAT . G 4 HOH A 3 992 3 HOH WAT . G 4 HOH A 4 993 5 HOH WAT . G 4 HOH A 5 994 6 HOH WAT . G 4 HOH A 6 995 7 HOH WAT . G 4 HOH A 7 996 8 HOH WAT . G 4 HOH A 8 997 9 HOH WAT . G 4 HOH A 9 998 14 HOH WAT . G 4 HOH A 10 999 20 HOH WAT . G 4 HOH A 11 1000 21 HOH WAT . G 4 HOH A 12 1001 41 HOH WAT . G 4 HOH A 13 1002 50 HOH WAT . G 4 HOH A 14 1003 51 HOH WAT . G 4 HOH A 15 1004 52 HOH WAT . G 4 HOH A 16 1005 53 HOH WAT . G 4 HOH A 17 1006 54 HOH WAT . H 4 HOH B 1 11 11 HOH WAT . H 4 HOH B 2 12 12 HOH WAT . H 4 HOH B 3 13 13 HOH WAT . H 4 HOH B 4 23 23 HOH WAT . H 4 HOH B 5 24 24 HOH WAT . H 4 HOH B 6 25 25 HOH WAT . H 4 HOH B 7 30 30 HOH WAT . H 4 HOH B 8 31 31 HOH WAT . H 4 HOH B 9 34 34 HOH WAT . H 4 HOH B 10 35 35 HOH WAT . H 4 HOH B 11 36 36 HOH WAT . H 4 HOH B 12 37 37 HOH WAT . H 4 HOH B 13 38 38 HOH WAT . H 4 HOH B 14 39 39 HOH WAT . H 4 HOH B 15 40 40 HOH WAT . H 4 HOH B 16 55 55 HOH WAT . H 4 HOH B 17 56 56 HOH WAT . H 4 HOH B 18 57 57 HOH WAT . H 4 HOH B 19 58 58 HOH WAT . H 4 HOH B 20 59 59 HOH WAT . H 4 HOH B 21 60 60 HOH WAT . H 4 HOH B 22 61 61 HOH WAT . H 4 HOH B 23 62 62 HOH WAT . H 4 HOH B 24 900 900 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A ACG . . . E 2 12.218 52.258 24.873 1 58.85 ? C1A ACG 988 B 1 HETATM 2 C C2A ACG . . . E 2 12.77 50.841 24.653 1 58.85 ? C2A ACG 988 B 1 HETATM 3 C C3A ACG . . . E 2 13.654 50.803 23.389 1 58.85 ? C3A ACG 988 B 1 HETATM 4 C C4A ACG . . . E 2 12.922 51.245 22.105 1 58.85 ? C4A ACG 988 B 1 HETATM 5 C C5A ACG . . . E 2 11.718 52.159 22.351 1 58.85 ? C5A ACG 988 B 1 HETATM 6 C C6A ACG . . . E 2 10.912 52.647 21.148 1 58.85 ? C6A ACG 988 B 1 HETATM 7 C C7A ACG . . . E 2 11.398 52.607 23.631 1 58.85 ? C7A ACG 988 B 1 HETATM 8 O O2A ACG . . . E 2 13.4 50.432 25.834 1 58.85 ? O2A ACG 988 B 1 HETATM 9 O O3A ACG . . . E 2 14.11 49.527 23.157 1 58.85 ? O3A ACG 988 B 1 HETATM 10 O O4A ACG . . . E 2 13.959 51.749 21.258 1 58.85 ? O4A ACG 988 B 1 HETATM 11 O O6A ACG . . . E 2 9.567 52.207 21.318 1 58.85 ? O6A ACG 988 B 1 HETATM 12 C C1B ACG . . . E 2 13.744 57.405 25.928 1 67.67 ? C1B ACG 988 B 1 HETATM 13 C C2B ACG . . . E 2 12.296 56.79 25.936 1 67.67 ? C2B ACG 988 B 1 HETATM 14 C C3B ACG . . . E 2 12.338 55.259 26.234 1 67.67 ? C3B ACG 988 B 1 HETATM 15 C C4B ACG . . . E 2 13.238 54.563 25.186 1 67.67 ? C4B ACG 988 B 1 HETATM 16 C C5B ACG . . . E 2 14.662 55.195 25.306 1 67.67 ? C5B ACG 988 B 1 HETATM 17 C C6B ACG . . . E 2 15.634 54.603 24.318 1 67.67 ? C6B ACG 988 B 1 HETATM 18 N N4B ACG . . . E 2 13.307 53.09 25.414 1 67.67 ? N4B ACG 988 B 1 HETATM 19 O O2B ACG . . . E 2 11.454 57.504 26.833 1 67.67 ? O2B ACG 988 B 1 HETATM 20 O O3B ACG . . . E 2 11.013 54.758 26.209 1 67.67 ? O3B ACG 988 B 1 HETATM 21 O O5B ACG . . . E 2 14.583 56.654 25.051 1 67.67 ? O5B ACG 988 B 1 HETATM 22 C C1C ACG . . . E 2 17.259 59.877 29.089 1 77.76 ? C1C ACG 988 B 1 HETATM 23 C C2C ACG . . . E 2 15.907 60.365 28.599 1 77.76 ? C2C ACG 988 B 1 HETATM 24 C C3C ACG . . . E 2 14.96 59.185 28.301 1 77.76 ? C3C ACG 988 B 1 HETATM 25 C C4C ACG . . . E 2 15.616 58.258 27.249 1 77.76 ? C4C ACG 988 B 1 HETATM 26 C C5C ACG . . . E 2 16.894 57.731 27.946 1 77.76 ? C5C ACG 988 B 1 HETATM 27 C C6C ACG . . . E 2 17.679 56.78 27.052 1 77.76 ? C6C ACG 988 B 1 HETATM 28 O O2C ACG . . . E 2 15.41 61.282 29.551 1 77.76 ? O2C ACG 988 B 1 HETATM 29 O O3C ACG . . . E 2 13.737 59.682 27.826 1 77.76 ? O3C ACG 988 B 1 HETATM 30 O O4C ACG . . . E 2 14.45 57.342 27.176 1 77.76 ? O4C ACG 988 B 1 HETATM 31 O O5C ACG . . . E 2 17.793 58.873 28.223 1 77.76 ? O5C ACG 988 B 1 HETATM 32 O O6C ACG . . . E 2 18.901 57.354 26.596 1 77.76 ? O6C ACG 988 B 1 HETATM 33 C C1D ACG . . . E 2 19 59.782 34.281 1 81.94 ? C1D ACG 988 B 1 HETATM 34 C C2D ACG . . . E 2 17.794 60.731 33.955 1 81.94 ? C2D ACG 988 B 1 HETATM 35 C C3D ACG . . . E 2 16.994 60.146 32.771 1 81.94 ? C3D ACG 988 B 1 HETATM 36 C C4D ACG . . . E 2 17.928 59.971 31.561 1 81.94 ? C4D ACG 988 B 1 HETATM 37 C C5D ACG . . . E 2 19.125 59.02 31.935 1 81.94 ? C5D ACG 988 B 1 HETATM 38 C C6D ACG . . . E 2 20.117 58.845 30.788 1 81.94 ? C6D ACG 988 B 1 HETATM 39 O O1D ACG . . . E 2 18.53 58.537 34.74 1 81.94 ? O1D ACG 988 B 1 HETATM 40 O O2D ACG . . . E 2 16.958 60.913 35.109 1 81.94 ? O2D ACG 988 B 1 HETATM 41 O O3D ACG . . . E 2 15.904 61.018 32.437 1 81.94 ? O3D ACG 988 B 1 HETATM 42 O O4D ACG . . . E 2 17.164 59.424 30.464 1 81.94 ? O4D ACG 988 B 1 HETATM 43 O O5D ACG . . . E 2 19.857 59.58 33.079 1 81.94 ? O5D ACG 988 B 1 HETATM 44 O O6D ACG . . . E 2 21.228 59.71 30.966 1 81.94 ? O6D ACG 988 B 1 HETATM 45 C C1E ACG . . . E 2 14.113 50.883 19.974 0.7 66.43 ? C1E ACG 988 B 1 HETATM 46 C C2E ACG . . . E 2 15.591 50.485 19.708 0.7 66.43 ? C2E ACG 988 B 1 HETATM 47 C C3E ACG . . . E 2 16.353 51.621 18.974 0.7 66.43 ? C3E ACG 988 B 1 HETATM 48 C C4E ACG . . . E 2 15.564 52.037 17.732 0.7 66.43 ? C4E ACG 988 B 1 HETATM 49 C C5E ACG . . . E 2 14.173 52.558 18.191 0.7 66.43 ? C5E ACG 988 B 1 HETATM 50 C C6E ACG . . . E 2 13.307 53.055 17.013 0.7 66.43 ? C6E ACG 988 B 1 HETATM 51 O O2E ACG . . . E 2 16.226 50.249 20.951 0.7 66.43 ? O2E ACG 988 B 1 HETATM 52 O O3E ACG . . . E 2 17.643 51.163 18.611 0.7 66.43 ? O3E ACG 988 B 1 HETATM 53 O O4E ACG . . . E 2 16.284 53.029 17.022 0.7 66.43 ? O4E ACG 988 B 1 HETATM 54 O O5E ACG . . . E 2 13.48 51.472 18.828 0.7 66.43 ? O5E ACG 988 B 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 54 #