data_1LWV # _model_server_result.job_id '_cdZfpndtNM-t_Y6WnnLcA' _model_server_result.datetime_utc '2024-11-13 06:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lwv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":328}' # _entry.id 1LWV # _exptl.entry_id 1LWV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.141 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-AMINOGUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LWV _cell.length_a 91.995 _cell.length_b 91.995 _cell.length_c 211.427 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LWV _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 7 E DA 22 1_555 B P PED 8 E PED 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.594 ? covale ? covale2 B O3' PED 8 E PED 23 1_555 B P DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale3 B C1' PED 8 E PED 23 1_555 C NZ LYS 246 A LYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 G O HOH . E HOH 6 1_555 D CA CA . E CA 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? hydrog 'DG-DC PAIR' hydrog1 A N1 DG 1 D DG 1 1_555 B O2 DC 15 E DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 2 D DG 2 1_555 B N3 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 2 D DG 2 1_555 B O2 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 2 D DG 2 1_555 B N4 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N3 DT 3 D DT 3 1_555 B N1 DA 13 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O4 DT 3 D DT 3 1_555 B N6 DA 13 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 4 D DA 4 1_555 B N3 DT 12 E DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 4 D DA 4 1_555 B O4 DT 12 E DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog9 A N1 DG 5 D DG 5 1_555 B N3 DC 11 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 6 D DA 6 1_555 B N3 DT 10 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 6 D DA 6 1_555 B O4 DT 10 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 7 D DC 7 1_555 B N1 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 7 D DC 7 1_555 B O6 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 7 D DC 7 1_555 B N2 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 9 D DT 9 1_555 B N1 DA 7 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 9 D DT 9 1_555 B N6 DA 7 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 10 D DG 10 1_555 B N3 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 10 D DG 10 1_555 B O2 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 10 D DG 10 1_555 B N4 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 11 D DG 11 1_555 B N3 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 11 D DG 11 1_555 B O2 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 11 D DG 11 1_555 B N4 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 12 D DA 12 1_555 B N3 DT 4 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 12 D DA 12 1_555 B O4 DT 4 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 13 D DC 13 1_555 B N1 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 13 D DC 13 1_555 B O6 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 13 D DC 13 1_555 B N2 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog28 A N2 DG 14 D DG 14 1_555 B N3 DC 2 E DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog29 A O2 DC 15 D DC 15 1_555 B N1 DG 1 E DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H6 N6 O' _chem_comp.formula_weight 166.141 _chem_comp.id ANG _chem_comp.mon_nstd_flag . _chem_comp.name 8-AMINOGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C4 ANG sing 13 n y N9 C8 ANG sing 14 n y N9 H9 ANG sing 15 n n C4 N3 ANG sing 16 n n C4 C5 ANG doub 17 n y N3 C2 ANG doub 18 n n C2 N2 ANG sing 19 n n C2 N1 ANG sing 20 n n N2 H21 ANG sing 21 n n N2 H22 ANG sing 22 n n N1 C6 ANG sing 23 n n N1 H1 ANG sing 24 n n C6 O6 ANG doub 25 n n C6 C5 ANG sing 26 n n C5 N7 ANG sing 27 n y N7 C8 ANG doub 28 n y C8 N8 ANG sing 29 n n N8 H81 ANG sing 30 n n N8 H82 ANG sing 31 n n # _atom_sites.entry_id 1LWV _atom_sites.fract_transf_matrix[1][1] 0.01087 _atom_sites.fract_transf_matrix[1][2] 0.006276 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA E 1 153 1 CA CA . E 5 ANG A 1 328 150 ANG AMG . F 6 HOH D 1 103 103 HOH HOH . F 6 HOH D 2 117 117 HOH HOH . F 6 HOH D 3 136 136 HOH HOH . F 6 HOH D 4 137 137 HOH HOH . F 6 HOH D 5 144 144 HOH HOH . F 6 HOH D 6 150 150 HOH HOH . F 6 HOH D 7 151 151 HOH HOH . F 6 HOH D 8 152 152 HOH HOH . G 6 HOH E 1 6 6 HOH HOH . G 6 HOH E 2 47 47 HOH HOH . G 6 HOH E 3 60 60 HOH HOH . G 6 HOH E 4 74 74 HOH HOH . G 6 HOH E 5 76 76 HOH HOH . G 6 HOH E 6 107 107 HOH HOH . H 6 HOH A 1 329 1 HOH HOH . H 6 HOH A 2 330 2 HOH HOH . H 6 HOH A 3 331 3 HOH HOH . H 6 HOH A 4 332 4 HOH HOH . H 6 HOH A 5 333 5 HOH HOH . H 6 HOH A 6 334 7 HOH HOH . H 6 HOH A 7 335 8 HOH HOH . H 6 HOH A 8 336 9 HOH HOH . H 6 HOH A 9 337 10 HOH HOH . H 6 HOH A 10 338 11 HOH HOH . H 6 HOH A 11 339 12 HOH HOH . H 6 HOH A 12 340 13 HOH HOH . H 6 HOH A 13 341 14 HOH HOH . H 6 HOH A 14 342 15 HOH HOH . H 6 HOH A 15 343 16 HOH HOH . H 6 HOH A 16 344 17 HOH HOH . H 6 HOH A 17 345 18 HOH HOH . H 6 HOH A 18 346 19 HOH HOH . H 6 HOH A 19 347 20 HOH HOH . H 6 HOH A 20 348 21 HOH HOH . H 6 HOH A 21 349 22 HOH HOH . H 6 HOH A 22 350 23 HOH HOH . H 6 HOH A 23 351 24 HOH HOH . H 6 HOH A 24 352 25 HOH HOH . H 6 HOH A 25 353 26 HOH HOH . H 6 HOH A 26 354 27 HOH HOH . H 6 HOH A 27 355 28 HOH HOH . H 6 HOH A 28 356 29 HOH HOH . H 6 HOH A 29 357 30 HOH HOH . H 6 HOH A 30 358 31 HOH HOH . H 6 HOH A 31 359 32 HOH HOH . H 6 HOH A 32 360 33 HOH HOH . H 6 HOH A 33 361 34 HOH HOH . H 6 HOH A 34 362 35 HOH HOH . H 6 HOH A 35 363 36 HOH HOH . H 6 HOH A 36 364 37 HOH HOH . H 6 HOH A 37 365 38 HOH HOH . H 6 HOH A 38 366 39 HOH HOH . H 6 HOH A 39 367 40 HOH HOH . H 6 HOH A 40 368 41 HOH HOH . H 6 HOH A 41 369 42 HOH HOH . H 6 HOH A 42 370 43 HOH HOH . H 6 HOH A 43 371 44 HOH HOH . H 6 HOH A 44 372 45 HOH HOH . H 6 HOH A 45 373 46 HOH HOH . H 6 HOH A 46 374 48 HOH HOH . H 6 HOH A 47 375 49 HOH HOH . H 6 HOH A 48 376 50 HOH HOH . H 6 HOH A 49 377 51 HOH HOH . H 6 HOH A 50 378 52 HOH HOH . H 6 HOH A 51 379 53 HOH HOH . H 6 HOH A 52 380 54 HOH HOH . H 6 HOH A 53 381 55 HOH HOH . H 6 HOH A 54 382 56 HOH HOH . H 6 HOH A 55 383 57 HOH HOH . H 6 HOH A 56 384 58 HOH HOH . H 6 HOH A 57 385 59 HOH HOH . H 6 HOH A 58 386 61 HOH HOH . H 6 HOH A 59 387 62 HOH HOH . H 6 HOH A 60 388 63 HOH HOH . H 6 HOH A 61 389 64 HOH HOH . H 6 HOH A 62 390 65 HOH HOH . H 6 HOH A 63 391 66 HOH HOH . H 6 HOH A 64 392 67 HOH HOH . H 6 HOH A 65 393 68 HOH HOH . H 6 HOH A 66 394 69 HOH HOH . H 6 HOH A 67 395 70 HOH HOH . H 6 HOH A 68 396 71 HOH HOH . H 6 HOH A 69 397 72 HOH HOH . H 6 HOH A 70 398 75 HOH HOH . H 6 HOH A 71 399 77 HOH HOH . H 6 HOH A 72 400 78 HOH HOH . H 6 HOH A 73 401 79 HOH HOH . H 6 HOH A 74 402 80 HOH HOH . H 6 HOH A 75 403 81 HOH HOH . H 6 HOH A 76 404 82 HOH HOH . H 6 HOH A 77 405 84 HOH HOH . H 6 HOH A 78 406 85 HOH HOH . H 6 HOH A 79 407 88 HOH HOH . H 6 HOH A 80 408 90 HOH HOH . H 6 HOH A 81 409 92 HOH HOH . H 6 HOH A 82 410 93 HOH HOH . H 6 HOH A 83 411 94 HOH HOH . H 6 HOH A 84 412 96 HOH HOH . H 6 HOH A 85 413 97 HOH HOH . H 6 HOH A 86 414 98 HOH HOH . H 6 HOH A 87 415 99 HOH HOH . H 6 HOH A 88 416 100 HOH HOH . H 6 HOH A 89 417 101 HOH HOH . H 6 HOH A 90 418 102 HOH HOH . H 6 HOH A 91 419 104 HOH HOH . H 6 HOH A 92 420 105 HOH HOH . H 6 HOH A 93 421 106 HOH HOH . H 6 HOH A 94 422 108 HOH HOH . H 6 HOH A 95 423 109 HOH HOH . H 6 HOH A 96 424 110 HOH HOH . H 6 HOH A 97 425 111 HOH HOH . H 6 HOH A 98 426 112 HOH HOH . H 6 HOH A 99 427 113 HOH HOH . H 6 HOH A 100 428 114 HOH HOH . H 6 HOH A 101 429 115 HOH HOH . H 6 HOH A 102 430 116 HOH HOH . H 6 HOH A 103 431 118 HOH HOH . H 6 HOH A 104 432 119 HOH HOH . H 6 HOH A 105 433 120 HOH HOH . H 6 HOH A 106 434 121 HOH HOH . H 6 HOH A 107 435 122 HOH HOH . H 6 HOH A 108 436 123 HOH HOH . H 6 HOH A 109 437 124 HOH HOH . H 6 HOH A 110 438 125 HOH HOH . H 6 HOH A 111 439 126 HOH HOH . H 6 HOH A 112 440 127 HOH HOH . H 6 HOH A 113 441 128 HOH HOH . H 6 HOH A 114 442 129 HOH HOH . H 6 HOH A 115 443 130 HOH HOH . H 6 HOH A 116 444 131 HOH HOH . H 6 HOH A 117 445 132 HOH HOH . H 6 HOH A 118 446 133 HOH HOH . H 6 HOH A 119 447 134 HOH HOH . H 6 HOH A 120 448 135 HOH HOH . H 6 HOH A 121 449 138 HOH HOH . H 6 HOH A 122 450 139 HOH HOH . H 6 HOH A 123 451 140 HOH HOH . H 6 HOH A 124 452 141 HOH HOH . H 6 HOH A 125 453 142 HOH HOH . H 6 HOH A 126 454 143 HOH HOH . H 6 HOH A 127 455 145 HOH HOH . H 6 HOH A 128 456 146 HOH HOH . H 6 HOH A 129 457 147 HOH HOH . H 6 HOH A 130 458 148 HOH HOH . H 6 HOH A 131 459 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ANG . . . E 5 20.466 23.538 33.629 1 22.17 ? N9 ANG 328 A 1 HETATM 2 C C4 ANG . . . E 5 20.394 23.94 32.318 1 22.7 ? C4 ANG 328 A 1 HETATM 3 N N3 ANG . . . E 5 20.422 25.215 31.876 1 24.3 ? N3 ANG 328 A 1 HETATM 4 C C2 ANG . . . E 5 20.347 25.277 30.552 1 24.73 ? C2 ANG 328 A 1 HETATM 5 N N2 ANG . . . E 5 20.367 26.469 29.928 1 25.15 ? N2 ANG 328 A 1 HETATM 6 N N1 ANG . . . E 5 20.251 24.176 29.737 1 21.72 ? N1 ANG 328 A 1 HETATM 7 C C6 ANG . . . E 5 20.218 22.858 30.172 1 22.62 ? C6 ANG 328 A 1 HETATM 8 O O6 ANG . . . E 5 20.13 21.948 29.35 1 25.17 ? O6 ANG 328 A 1 HETATM 9 C C5 ANG . . . E 5 20.298 22.771 31.581 1 22.09 ? C5 ANG 328 A 1 HETATM 10 N N7 ANG . . . E 5 20.306 21.66 32.414 1 22.83 ? N7 ANG 328 A 1 HETATM 11 C C8 ANG . . . E 5 20.413 22.163 33.612 1 22.26 ? C8 ANG 328 A 1 HETATM 12 N N8 ANG . . . E 5 20.472 21.405 34.717 1 21.2 ? N8 ANG 328 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #