data_1LWW # _model_server_result.job_id tjZSGMA2ge75XSEmouHaDw _model_server_result.datetime_utc '2024-11-04 22:51:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":216}' # _entry.id 1LWW # _exptl.entry_id 1LWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LWW _cell.length_a 92.174 _cell.length_b 92.174 _cell.length_c 211.887 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1' PED 8 E PED 23 1_555 C NZ LYS 246 A LYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B O3' DA 7 E DA 22 1_555 B P PED 8 E PED 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale3 B O3' PED 8 E PED 23 1_555 B P DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? metalc ? metalc1 D CA CA . E CA 216 1_555 G O HOH . E HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.044 ? metalc ? metalc2 D CA CA . E CA 216 1_555 G O HOH . E HOH 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? hydrog 'DG-DC PAIR' hydrog1 A N1 DG 1 D DG 1 1_555 B O2 DC 15 E DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DG 2 D DG 2 1_555 B N3 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 DG 2 D DG 2 1_555 B O2 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 DG 2 D DG 2 1_555 B N4 DC 14 E DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog5 A O4 DT 3 D DT 3 1_555 B N6 DA 13 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 D DA 4 1_555 B N3 DT 12 E DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 D DA 4 1_555 B O4 DT 12 E DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 5 D DG 5 1_555 B N3 DC 11 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 5 D DG 5 1_555 B O2 DC 11 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 5 D DG 5 1_555 B N4 DC 11 E DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 6 D DA 6 1_555 B N3 DT 10 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 6 D DA 6 1_555 B O4 DT 10 E DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 7 D DC 7 1_555 B N1 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 7 D DC 7 1_555 B O6 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 7 D DC 7 1_555 B N2 DG 9 E DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 9 D DT 9 1_555 B N1 DA 7 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 9 D DT 9 1_555 B N6 DA 7 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 D DG 10 1_555 B N3 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 D DG 10 1_555 B O2 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 D DG 10 1_555 B N4 DC 6 E DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DG 11 D DG 11 1_555 B N3 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 DG 11 D DG 11 1_555 B O2 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 DG 11 D DG 11 1_555 B N4 DC 5 E DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 12 D DA 12 1_555 B N3 DT 4 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 12 D DA 12 1_555 B O4 DT 4 E DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DC 13 D DC 13 1_555 B N1 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 DC 13 D DC 13 1_555 B O6 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 DC 13 D DC 13 1_555 B N2 DG 3 E DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N1 DG 14 D DG 14 1_555 B N3 DC 2 E DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N2 DG 14 D DG 14 1_555 B O2 DC 2 E DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O6 DG 14 D DG 14 1_555 B N4 DC 2 E DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1LWW _atom_sites.fract_transf_matrix[1][1] 0.010849 _atom_sites.fract_transf_matrix[1][2] 0.006264 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA E 1 216 1 CA CA . E 5 BRG A 1 328 150 BRG BRG . F 6 HOH D 1 61 61 HOH HOH . F 6 HOH D 2 141 141 HOH HOH . F 6 HOH D 3 147 147 HOH HOH . F 6 HOH D 4 158 158 HOH HOH . F 6 HOH D 5 159 159 HOH HOH . F 6 HOH D 6 163 163 HOH HOH . F 6 HOH D 7 179 179 HOH HOH . F 6 HOH D 8 191 191 HOH HOH . G 6 HOH E 1 6 6 HOH HOH . G 6 HOH E 2 47 47 HOH HOH . G 6 HOH E 3 60 60 HOH HOH . G 6 HOH E 4 74 74 HOH HOH . G 6 HOH E 5 138 138 HOH HOH . G 6 HOH E 6 177 177 HOH HOH . G 6 HOH E 7 208 208 HOH HOH . G 6 HOH E 8 209 209 HOH HOH . H 6 HOH A 1 329 1 HOH HOH . H 6 HOH A 2 330 2 HOH HOH . H 6 HOH A 3 331 3 HOH HOH . H 6 HOH A 4 332 4 HOH HOH . H 6 HOH A 5 333 5 HOH HOH . H 6 HOH A 6 334 7 HOH HOH . H 6 HOH A 7 335 8 HOH HOH . H 6 HOH A 8 336 9 HOH HOH . H 6 HOH A 9 337 10 HOH HOH . H 6 HOH A 10 338 11 HOH HOH . H 6 HOH A 11 339 12 HOH HOH . H 6 HOH A 12 340 13 HOH HOH . H 6 HOH A 13 341 14 HOH HOH . H 6 HOH A 14 342 15 HOH HOH . H 6 HOH A 15 343 16 HOH HOH . H 6 HOH A 16 344 17 HOH HOH . H 6 HOH A 17 345 18 HOH HOH . H 6 HOH A 18 346 19 HOH HOH . H 6 HOH A 19 347 20 HOH HOH . H 6 HOH A 20 348 21 HOH HOH . H 6 HOH A 21 349 22 HOH HOH . H 6 HOH A 22 350 23 HOH HOH . H 6 HOH A 23 351 24 HOH HOH . H 6 HOH A 24 352 25 HOH HOH . H 6 HOH A 25 353 26 HOH HOH . H 6 HOH A 26 354 27 HOH HOH . H 6 HOH A 27 355 28 HOH HOH . H 6 HOH A 28 356 29 HOH HOH . H 6 HOH A 29 357 30 HOH HOH . H 6 HOH A 30 358 31 HOH HOH . H 6 HOH A 31 359 32 HOH HOH . H 6 HOH A 32 360 33 HOH HOH . H 6 HOH A 33 361 34 HOH HOH . H 6 HOH A 34 362 35 HOH HOH . H 6 HOH A 35 363 36 HOH HOH . H 6 HOH A 36 364 37 HOH HOH . H 6 HOH A 37 365 38 HOH HOH . H 6 HOH A 38 366 39 HOH HOH . H 6 HOH A 39 367 40 HOH HOH . H 6 HOH A 40 368 41 HOH HOH . H 6 HOH A 41 369 42 HOH HOH . H 6 HOH A 42 370 43 HOH HOH . H 6 HOH A 43 371 44 HOH HOH . H 6 HOH A 44 372 45 HOH HOH . H 6 HOH A 45 373 46 HOH HOH . H 6 HOH A 46 374 48 HOH HOH . H 6 HOH A 47 375 49 HOH HOH . H 6 HOH A 48 376 51 HOH HOH . H 6 HOH A 49 377 52 HOH HOH . H 6 HOH A 50 378 53 HOH HOH . H 6 HOH A 51 379 55 HOH HOH . H 6 HOH A 52 380 56 HOH HOH . H 6 HOH A 53 381 62 HOH HOH . H 6 HOH A 54 382 65 HOH HOH . H 6 HOH A 55 383 66 HOH HOH . H 6 HOH A 56 384 69 HOH HOH . H 6 HOH A 57 385 70 HOH HOH . H 6 HOH A 58 386 71 HOH HOH . H 6 HOH A 59 387 72 HOH HOH . H 6 HOH A 60 388 75 HOH HOH . H 6 HOH A 61 389 76 HOH HOH . H 6 HOH A 62 390 77 HOH HOH . H 6 HOH A 63 391 78 HOH HOH . H 6 HOH A 64 392 79 HOH HOH . H 6 HOH A 65 393 80 HOH HOH . H 6 HOH A 66 394 81 HOH HOH . H 6 HOH A 67 395 82 HOH HOH . H 6 HOH A 68 396 85 HOH HOH . H 6 HOH A 69 397 88 HOH HOH . H 6 HOH A 70 398 90 HOH HOH . H 6 HOH A 71 399 96 HOH HOH . H 6 HOH A 72 400 97 HOH HOH . H 6 HOH A 73 401 98 HOH HOH . H 6 HOH A 74 402 99 HOH HOH . H 6 HOH A 75 403 100 HOH HOH . H 6 HOH A 76 404 101 HOH HOH . H 6 HOH A 77 405 102 HOH HOH . H 6 HOH A 78 406 103 HOH HOH . H 6 HOH A 79 407 105 HOH HOH . H 6 HOH A 80 408 106 HOH HOH . H 6 HOH A 81 409 107 HOH HOH . H 6 HOH A 82 410 108 HOH HOH . H 6 HOH A 83 411 109 HOH HOH . H 6 HOH A 84 412 110 HOH HOH . H 6 HOH A 85 413 111 HOH HOH . H 6 HOH A 86 414 112 HOH HOH . H 6 HOH A 87 415 113 HOH HOH . H 6 HOH A 88 416 114 HOH HOH . H 6 HOH A 89 417 116 HOH HOH . H 6 HOH A 90 418 117 HOH HOH . H 6 HOH A 91 419 118 HOH HOH . H 6 HOH A 92 420 120 HOH HOH . H 6 HOH A 93 421 121 HOH HOH . H 6 HOH A 94 422 122 HOH HOH . H 6 HOH A 95 423 123 HOH HOH . H 6 HOH A 96 424 124 HOH HOH . H 6 HOH A 97 425 125 HOH HOH . H 6 HOH A 98 426 126 HOH HOH . H 6 HOH A 99 427 128 HOH HOH . H 6 HOH A 100 428 129 HOH HOH . H 6 HOH A 101 429 130 HOH HOH . H 6 HOH A 102 430 131 HOH HOH . H 6 HOH A 103 431 134 HOH HOH . H 6 HOH A 104 432 135 HOH HOH . H 6 HOH A 105 433 136 HOH HOH . H 6 HOH A 106 434 137 HOH HOH . H 6 HOH A 107 435 139 HOH HOH . H 6 HOH A 108 436 140 HOH HOH . H 6 HOH A 109 437 142 HOH HOH . H 6 HOH A 110 438 143 HOH HOH . H 6 HOH A 111 439 144 HOH HOH . H 6 HOH A 112 440 146 HOH HOH . H 6 HOH A 113 441 149 HOH HOH . H 6 HOH A 114 442 150 HOH HOH . H 6 HOH A 115 443 151 HOH HOH . H 6 HOH A 116 444 152 HOH HOH . H 6 HOH A 117 445 153 HOH HOH . H 6 HOH A 118 446 154 HOH HOH . H 6 HOH A 119 447 156 HOH HOH . H 6 HOH A 120 448 157 HOH HOH . H 6 HOH A 121 449 162 HOH HOH . H 6 HOH A 122 450 168 HOH HOH . H 6 HOH A 123 451 169 HOH HOH . H 6 HOH A 124 452 172 HOH HOH . H 6 HOH A 125 453 174 HOH HOH . H 6 HOH A 126 454 175 HOH HOH . H 6 HOH A 127 455 176 HOH HOH . H 6 HOH A 128 456 178 HOH HOH . H 6 HOH A 129 457 181 HOH HOH . H 6 HOH A 130 458 182 HOH HOH . H 6 HOH A 131 459 184 HOH HOH . H 6 HOH A 132 460 185 HOH HOH . H 6 HOH A 133 461 186 HOH HOH . H 6 HOH A 134 462 187 HOH HOH . H 6 HOH A 135 463 188 HOH HOH . H 6 HOH A 136 464 189 HOH HOH . H 6 HOH A 137 465 190 HOH HOH . H 6 HOH A 138 466 192 HOH HOH . H 6 HOH A 139 467 195 HOH HOH . H 6 HOH A 140 468 198 HOH HOH . H 6 HOH A 141 469 200 HOH HOH . H 6 HOH A 142 470 202 HOH HOH . H 6 HOH A 143 471 203 HOH HOH . H 6 HOH A 144 472 205 HOH HOH . H 6 HOH A 145 473 207 HOH HOH . H 6 HOH A 146 474 211 HOH HOH . H 6 HOH A 147 475 212 HOH HOH . H 6 HOH A 148 476 215 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.459 _atom_site.Cartn_y 32.906 _atom_site.Cartn_z 40.067 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 216 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #