data_1LXI # _model_server_result.job_id uyT5rdhVJ67c05PI34R__A _model_server_result.datetime_utc '2025-02-05 19:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":180}' # _entry.id 1LXI # _exptl.entry_id 1LXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LXI _cell.length_a 101.294 _cell.length_b 101.294 _cell.length_c 41.812 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 175.446355 13.937333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 38 1_555 A SG CYS 104 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 67 A CYS 67 1_555 A SG CYS 136 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 71 A CYS 71 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 B C1 NAG . A NAG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1LXI _atom_sites.fract_transf_matrix[1][1] 0.009872 _atom_sites.fract_transf_matrix[1][2] 0.0057 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 180 180 NAG NAG . C 3 HOH A 1 181 1 HOH HOH . C 3 HOH A 2 182 2 HOH HOH . C 3 HOH A 3 183 3 HOH HOH . C 3 HOH A 4 184 4 HOH HOH . C 3 HOH A 5 185 5 HOH HOH . C 3 HOH A 6 186 6 HOH HOH . C 3 HOH A 7 187 7 HOH HOH . C 3 HOH A 8 188 8 HOH HOH . C 3 HOH A 9 189 9 HOH HOH . C 3 HOH A 10 190 10 HOH HOH . C 3 HOH A 11 191 11 HOH HOH . C 3 HOH A 12 192 12 HOH HOH . C 3 HOH A 13 193 13 HOH HOH . C 3 HOH A 14 194 14 HOH HOH . C 3 HOH A 15 195 15 HOH HOH . C 3 HOH A 16 196 16 HOH HOH . C 3 HOH A 17 197 17 HOH HOH . C 3 HOH A 18 198 18 HOH HOH . C 3 HOH A 19 199 19 HOH HOH . C 3 HOH A 20 200 20 HOH HOH . C 3 HOH A 21 201 21 HOH HOH . C 3 HOH A 22 202 22 HOH HOH . C 3 HOH A 23 203 23 HOH HOH . C 3 HOH A 24 204 24 HOH HOH . C 3 HOH A 25 205 25 HOH HOH . C 3 HOH A 26 206 26 HOH HOH . C 3 HOH A 27 207 27 HOH HOH . C 3 HOH A 28 208 28 HOH HOH . C 3 HOH A 29 209 29 HOH HOH . C 3 HOH A 30 210 30 HOH HOH . C 3 HOH A 31 211 31 HOH HOH . C 3 HOH A 32 212 32 HOH HOH . C 3 HOH A 33 213 33 HOH HOH . C 3 HOH A 34 214 34 HOH HOH . C 3 HOH A 35 215 35 HOH HOH . C 3 HOH A 36 216 36 HOH HOH . C 3 HOH A 37 217 37 HOH HOH . C 3 HOH A 38 218 38 HOH HOH . C 3 HOH A 39 219 39 HOH HOH . C 3 HOH A 40 220 40 HOH HOH . C 3 HOH A 41 221 41 HOH HOH . C 3 HOH A 42 222 42 HOH HOH . C 3 HOH A 43 223 43 HOH HOH . C 3 HOH A 44 224 44 HOH HOH . C 3 HOH A 45 225 45 HOH HOH . C 3 HOH A 46 226 46 HOH HOH . C 3 HOH A 47 227 47 HOH HOH . C 3 HOH A 48 228 48 HOH HOH . C 3 HOH A 49 229 49 HOH HOH . C 3 HOH A 50 230 50 HOH HOH . C 3 HOH A 51 231 51 HOH HOH . C 3 HOH A 52 232 52 HOH HOH . C 3 HOH A 53 233 53 HOH HOH . C 3 HOH A 54 234 54 HOH HOH . C 3 HOH A 55 235 55 HOH HOH . C 3 HOH A 56 236 56 HOH HOH . C 3 HOH A 57 237 57 HOH HOH . C 3 HOH A 58 238 58 HOH HOH . C 3 HOH A 59 239 59 HOH HOH . C 3 HOH A 60 240 60 HOH HOH . C 3 HOH A 61 241 61 HOH HOH . C 3 HOH A 62 242 62 HOH HOH . C 3 HOH A 63 243 63 HOH HOH . C 3 HOH A 64 244 64 HOH HOH . C 3 HOH A 65 245 65 HOH HOH . C 3 HOH A 66 246 66 HOH HOH . C 3 HOH A 67 247 67 HOH HOH . C 3 HOH A 68 248 68 HOH HOH . C 3 HOH A 69 249 69 HOH HOH . C 3 HOH A 70 250 70 HOH HOH . C 3 HOH A 71 251 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 2.832 90.716 18.267 1 48.47 ? C1 NAG 180 A 1 HETATM 2 C C2 NAG . . . B 2 2.108 89.594 19.002 1 48.3 ? C2 NAG 180 A 1 HETATM 3 C C3 NAG . . . B 2 2.788 89.335 20.343 1 53.26 ? C3 NAG 180 A 1 HETATM 4 C C4 NAG . . . B 2 4.245 88.989 20.096 1 57.56 ? C4 NAG 180 A 1 HETATM 5 C C5 NAG . . . B 2 4.92 90.125 19.343 1 58.14 ? C5 NAG 180 A 1 HETATM 6 C C6 NAG . . . B 2 6.38 89.72 19.115 1 58.66 ? C6 NAG 180 A 1 HETATM 7 C C7 NAG . . . B 2 -0.283 88.972 18.995 1 45.31 ? C7 NAG 180 A 1 HETATM 8 C C8 NAG . . . B 2 -1.68 89.469 19.232 1 45.87 ? C8 NAG 180 A 1 HETATM 9 N N2 NAG . . . B 2 0.68 89.841 19.179 1 40.39 ? N2 NAG 180 A 1 HETATM 10 O O3 NAG . . . B 2 2.189 88.273 21.028 1 48.83 ? O3 NAG 180 A 1 HETATM 11 O O4 NAG . . . B 2 4.902 88.734 21.322 1 60.88 ? O4 NAG 180 A 1 HETATM 12 O O5 NAG . . . B 2 4.206 90.349 18.131 1 50.18 ? O5 NAG 180 A 1 HETATM 13 O O6 NAG . . . B 2 7.265 90.648 19.687 1 65.9 ? O6 NAG 180 A 1 HETATM 14 O O7 NAG . . . B 2 -0.153 87.774 18.68 1 47.4 ? O7 NAG 180 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #