data_1LY2
#
_model_server_result.job_id            4qb014ECDurMYT0SfKB_0g 
_model_server_result.datetime_utc      '2025-03-29 19:32:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ly2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    1LY2 
#
_exptl.entry_id    1LY2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.51 
_cell.angle_beta          111.44 
_cell.angle_gamma         117.81 
_cell.entry_id            1LY2 
_cell.length_a            31.6 
_cell.length_b            33.27 
_cell.length_c            42.11 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LY2 
_symmetry.cell_setting             triclinic 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 3 1_555 A SG CYS 46 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 32 A CYS 31 1_555 A SG CYS 63 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 A SG CYS 72 A CYS 71 1_555 A SG CYS 113 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 A SG CYS 99 A CYS 98 1_555 A SG CYS 127 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
covale ? covale1 A ND2 ASN 102 A ASN 101 1_555 B C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 A ND2 ASN 108 A ASN 107 1_555 C C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1LY2 
_atom_sites.fract_transf_matrix[1][1]    0.031646 
_atom_sites.fract_transf_matrix[1][2]    0.016692 
_atom_sites.fract_transf_matrix[1][3]    0.01691 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.033982 
_atom_sites.fract_transf_matrix[2][3]    0.008369 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026275 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 1001 1001 NAG NAG . 
C 2 NAG A 1 1002 1002 NAG NAG . 
D 3 HOH A 1 1003 1 HOH HOH . 
D 3 HOH A 2 1004 2 HOH HOH . 
D 3 HOH A 3 1005 3 HOH HOH . 
D 3 HOH A 4 1006 4 HOH HOH . 
D 3 HOH A 5 1007 5 HOH HOH . 
D 3 HOH A 6 1008 6 HOH HOH . 
D 3 HOH A 7 1009 7 HOH HOH . 
D 3 HOH A 8 1010 8 HOH HOH . 
D 3 HOH A 9 1011 9 HOH HOH . 
D 3 HOH A 10 1012 10 HOH HOH . 
D 3 HOH A 11 1013 11 HOH HOH . 
D 3 HOH A 12 1014 12 HOH HOH . 
D 3 HOH A 13 1015 13 HOH HOH . 
D 3 HOH A 14 1016 14 HOH HOH . 
D 3 HOH A 15 1017 15 HOH HOH . 
D 3 HOH A 16 1018 16 HOH HOH . 
D 3 HOH A 17 1019 17 HOH HOH . 
D 3 HOH A 18 1020 18 HOH HOH . 
D 3 HOH A 19 1021 19 HOH HOH . 
D 3 HOH A 20 1022 20 HOH HOH . 
D 3 HOH A 21 1023 21 HOH HOH . 
D 3 HOH A 22 1024 22 HOH HOH . 
D 3 HOH A 23 1025 23 HOH HOH . 
D 3 HOH A 24 1026 24 HOH HOH . 
D 3 HOH A 25 1027 25 HOH HOH . 
D 3 HOH A 26 1028 26 HOH HOH . 
D 3 HOH A 27 1029 27 HOH HOH . 
D 3 HOH A 28 1030 28 HOH HOH . 
D 3 HOH A 29 1031 29 HOH HOH . 
D 3 HOH A 30 1032 30 HOH HOH . 
D 3 HOH A 31 1033 31 HOH HOH . 
D 3 HOH A 32 1034 32 HOH HOH . 
D 3 HOH A 33 1035 33 HOH HOH . 
D 3 HOH A 34 1036 34 HOH HOH . 
D 3 HOH A 35 1037 35 HOH HOH . 
D 3 HOH A 36 1038 36 HOH HOH . 
D 3 HOH A 37 1039 37 HOH HOH . 
D 3 HOH A 38 1040 38 HOH HOH . 
D 3 HOH A 39 1041 39 HOH HOH . 
D 3 HOH A 40 1042 40 HOH HOH . 
D 3 HOH A 41 1043 41 HOH HOH . 
D 3 HOH A 42 1044 42 HOH HOH . 
D 3 HOH A 43 1045 43 HOH HOH . 
D 3 HOH A 44 1046 44 HOH HOH . 
D 3 HOH A 45 1047 45 HOH HOH . 
D 3 HOH A 46 1048 46 HOH HOH . 
D 3 HOH A 47 1049 47 HOH HOH . 
D 3 HOH A 48 1050 48 HOH HOH . 
D 3 HOH A 49 1051 49 HOH HOH . 
D 3 HOH A 50 1052 50 HOH HOH . 
D 3 HOH A 51 1053 51 HOH HOH . 
D 3 HOH A 52 1054 52 HOH HOH . 
D 3 HOH A 53 1055 53 HOH HOH . 
D 3 HOH A 54 1056 54 HOH HOH . 
D 3 HOH A 55 1057 55 HOH HOH . 
D 3 HOH A 56 1058 56 HOH HOH . 
D 3 HOH A 57 1059 57 HOH HOH . 
D 3 HOH A 58 1060 58 HOH HOH . 
D 3 HOH A 59 1061 59 HOH HOH . 
D 3 HOH A 60 1062 60 HOH HOH . 
D 3 HOH A 61 1063 61 HOH HOH . 
D 3 HOH A 62 1064 62 HOH HOH . 
D 3 HOH A 63 1065 63 HOH HOH . 
D 3 HOH A 64 1066 64 HOH HOH . 
D 3 HOH A 65 1067 65 HOH HOH . 
D 3 HOH A 66 1068 66 HOH HOH . 
D 3 HOH A 67 1069 67 HOH HOH . 
D 3 HOH A 68 1070 68 HOH HOH . 
D 3 HOH A 69 1071 69 HOH HOH . 
D 3 HOH A 70 1072 70 HOH HOH . 
D 3 HOH A 71 1073 71 HOH HOH . 
D 3 HOH A 72 1074 72 HOH HOH . 
D 3 HOH A 73 1075 73 HOH HOH . 
D 3 HOH A 74 1076 74 HOH HOH . 
D 3 HOH A 75 1077 75 HOH HOH . 
D 3 HOH A 76 1078 76 HOH HOH . 
D 3 HOH A 77 1079 77 HOH HOH . 
D 3 HOH A 78 1080 78 HOH HOH . 
D 3 HOH A 79 1081 79 HOH HOH . 
D 3 HOH A 80 1082 80 HOH HOH . 
D 3 HOH A 81 1083 81 HOH HOH . 
D 3 HOH A 82 1084 82 HOH HOH . 
D 3 HOH A 83 1085 83 HOH HOH . 
D 3 HOH A 84 1086 84 HOH HOH . 
D 3 HOH A 85 1087 85 HOH HOH . 
D 3 HOH A 86 1088 86 HOH HOH . 
D 3 HOH A 87 1089 87 HOH HOH . 
D 3 HOH A 88 1090 88 HOH HOH . 
D 3 HOH A 89 1091 89 HOH HOH . 
D 3 HOH A 90 1092 90 HOH HOH . 
D 3 HOH A 91 1093 91 HOH HOH . 
D 3 HOH A 92 1094 92 HOH HOH . 
D 3 HOH A 93 1095 93 HOH HOH . 
D 3 HOH A 94 1096 94 HOH HOH . 
D 3 HOH A 95 1097 95 HOH HOH . 
D 3 HOH A 96 1098 96 HOH HOH . 
D 3 HOH A 97 1099 97 HOH HOH . 
D 3 HOH A 98 1100 98 HOH HOH . 
D 3 HOH A 99 1101 99 HOH HOH . 
D 3 HOH A 100 1102 100 HOH HOH . 
D 3 HOH A 101 1103 101 HOH HOH . 
D 3 HOH A 102 1104 102 HOH HOH . 
D 3 HOH A 103 1105 103 HOH HOH . 
D 3 HOH A 104 1106 104 HOH HOH . 
D 3 HOH A 105 1107 105 HOH HOH . 
D 3 HOH A 106 1108 106 HOH HOH . 
D 3 HOH A 107 1109 107 HOH HOH . 
D 3 HOH A 108 1110 109 HOH HOH . 
D 3 HOH A 109 1111 111 HOH HOH . 
D 3 HOH A 110 1112 112 HOH HOH . 
D 3 HOH A 111 1113 113 HOH HOH . 
D 3 HOH A 112 1114 114 HOH HOH . 
D 3 HOH A 113 1115 115 HOH HOH . 
D 3 HOH A 114 1116 116 HOH HOH . 
D 3 HOH A 115 1117 117 HOH HOH . 
D 3 HOH A 116 1118 118 HOH HOH . 
D 3 HOH A 117 1119 119 HOH HOH . 
D 3 HOH A 118 1120 120 HOH HOH . 
D 3 HOH A 119 1121 121 HOH HOH . 
D 3 HOH A 120 1122 122 HOH HOH . 
D 3 HOH A 121 1123 123 HOH HOH . 
D 3 HOH A 122 1124 124 HOH HOH . 
D 3 HOH A 123 1125 125 HOH HOH . 
D 3 HOH A 124 1126 126 HOH HOH . 
D 3 HOH A 125 1127 127 HOH HOH . 
D 3 HOH A 126 1128 129 HOH HOH . 
D 3 HOH A 127 1129 130 HOH HOH . 
D 3 HOH A 128 1130 131 HOH HOH . 
D 3 HOH A 129 1131 132 HOH HOH . 
D 3 HOH A 130 1132 133 HOH HOH . 
D 3 HOH A 131 1133 134 HOH HOH . 
D 3 HOH A 132 1134 135 HOH HOH . 
D 3 HOH A 133 1135 136 HOH HOH . 
D 3 HOH A 134 1136 137 HOH HOH . 
D 3 HOH A 135 1137 138 HOH HOH . 
D 3 HOH A 136 1138 139 HOH HOH . 
D 3 HOH A 137 1139 140 HOH HOH . 
D 3 HOH A 138 1140 141 HOH HOH . 
D 3 HOH A 139 1141 142 HOH HOH . 
D 3 HOH A 140 1142 143 HOH HOH . 
D 3 HOH A 141 1143 144 HOH HOH . 
D 3 HOH A 142 1144 145 HOH HOH . 
D 3 HOH A 143 1145 146 HOH HOH . 
D 3 HOH A 144 1146 147 HOH HOH . 
D 3 HOH A 145 1147 148 HOH HOH . 
D 3 HOH A 146 1148 149 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 -3.317 14.734 27.897 1 36.34 ? C1 NAG 1002 A 1 
HETATM 2 C C2 NAG . . . C 2 -4.642 14.107 27.44 1 36.19 ? C2 NAG 1002 A 1 
HETATM 3 C C3 NAG . . . C 2 -4.458 13.52 26.034 1 40.59 ? C3 NAG 1002 A 1 
HETATM 4 C C4 NAG . . . C 2 -3.952 14.607 25.091 1 41.58 ? C4 NAG 1002 A 1 
HETATM 5 C C5 NAG . . . C 2 -2.642 15.189 25.646 1 42.47 ? C5 NAG 1002 A 1 
HETATM 6 C C6 NAG . . . C 2 -2.037 16.286 24.776 1 39.46 ? C6 NAG 1002 A 1 
HETATM 7 C C7 NAG . . . C 2 -5.781 13.318 29.427 1 36.83 ? C7 NAG 1002 A 1 
HETATM 8 C C8 NAG . . . C 2 -6.118 12.148 30.338 1 29.66 ? C8 NAG 1002 A 1 
HETATM 9 N N2 NAG . . . C 2 -5.022 13.053 28.366 1 38.29 ? N2 NAG 1002 A 1 
HETATM 10 O O3 NAG . . . C 2 -5.683 12.992 25.545 1 39.28 ? O3 NAG 1002 A 1 
HETATM 11 O O4 NAG . . . C 2 -3.747 14.054 23.796 1 35.79 ? O4 NAG 1002 A 1 
HETATM 12 O O5 NAG . . . C 2 -2.871 15.741 26.97 1 41.36 ? O5 NAG 1002 A 1 
HETATM 13 O O6 NAG . . . C 2 -2.856 17.446 24.755 1 39.19 ? O6 NAG 1002 A 1 
HETATM 14 O O7 NAG . . . C 2 -6.217 14.443 29.669 1 38.01 ? O7 NAG 1002 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#