data_1LY3 # _model_server_result.job_id 2_azcDDqipT2mJ2ttoYsUg _model_server_result.datetime_utc '2024-11-07 14:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ly3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":307}' # _entry.id 1LY3 # _exptl.entry_id 1LY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.392 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,4-DIAMINO-6-[N-(2',5'-DIMETHOXYBENZYL)-N-METHYLAMINO]QUINAZOLINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.77 _cell.angle_gamma 90 _cell.entry_id 1LY3 _cell.length_a 37.373 _cell.length_b 43.263 _cell.length_c 61.372 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H21 N5 O2' _chem_comp.formula_weight 339.392 _chem_comp.id COG _chem_comp.mon_nstd_flag . _chem_comp.name "2,4-DIAMINO-6-[N-(2',5'-DIMETHOXYBENZYL)-N-METHYLAMINO]QUINAZOLINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2B N1' COG doub 70 n y C2B N2' COG sing 71 n n C2B N3' COG sing 72 n y C4B C4A COG sing 73 n y C4B N3' COG doub 74 n y C4B N4' COG sing 75 n n C4A C5B COG doub 76 n y C4A C8A COG sing 77 n y C5B C6B COG sing 78 n y C5B H5' COG sing 79 n n C6B C7B COG doub 80 n y C6B N6' COG sing 81 n n C7B C8' COG sing 82 n y C7B H7' COG sing 83 n n C8A N1' COG sing 84 n y C8A C8' COG doub 85 n y C21 O2' COG sing 86 n n C21 H211 COG sing 87 n n C21 H212 COG sing 88 n n C21 H213 COG sing 89 n n C7' C1' COG sing 90 n n C7' N6' COG sing 91 n n C7' "H7'1" COG sing 92 n n C7' "H7'2" COG sing 93 n n C61 N6' COG sing 94 n n C61 H611 COG sing 95 n n C61 H612 COG sing 96 n n C61 H613 COG sing 97 n n C1' C2' COG doub 98 n y C1' C6' COG sing 99 n y C2' C3' COG sing 100 n y C2' O2' COG sing 101 n n C3' C4' COG doub 102 n y C3' H3' COG sing 103 n n C4' C5' COG sing 104 n y C4' H4' COG sing 105 n n C5' C6' COG doub 106 n y C5' O5' COG sing 107 n n C51 O5' COG sing 108 n n C51 H511 COG sing 109 n n C51 H512 COG sing 110 n n C51 H513 COG sing 111 n n C6' H6' COG sing 112 n n N2' HN21 COG sing 113 n n N2' HN22 COG sing 114 n n N4' HN41 COG sing 115 n n N4' HN42 COG sing 116 n n C8' H8' COG sing 117 n n # _atom_sites.entry_id 1LY3 _atom_sites.fract_transf_matrix[1][1] 0.026757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 207 207 NAP COE . C 3 COG A 1 307 207 COG COE . D 4 HOH A 1 208 208 HOH HOH . D 4 HOH A 2 209 209 HOH HOH . D 4 HOH A 3 210 210 HOH HOH . D 4 HOH A 4 211 211 HOH HOH . D 4 HOH A 5 212 212 HOH HOH . D 4 HOH A 6 213 213 HOH HOH . D 4 HOH A 7 214 214 HOH HOH . D 4 HOH A 8 215 215 HOH HOH . D 4 HOH A 9 216 216 HOH HOH . D 4 HOH A 10 217 217 HOH HOH . D 4 HOH A 11 218 218 HOH HOH . D 4 HOH A 12 219 219 HOH HOH . D 4 HOH A 13 220 220 HOH HOH . D 4 HOH A 14 221 221 HOH HOH . D 4 HOH A 15 222 222 HOH HOH . D 4 HOH A 16 223 223 HOH HOH . D 4 HOH A 17 224 224 HOH HOH . D 4 HOH A 18 225 225 HOH HOH . D 4 HOH A 19 226 226 HOH HOH . D 4 HOH A 20 227 227 HOH HOH . D 4 HOH A 21 228 228 HOH HOH . D 4 HOH A 22 229 229 HOH HOH . D 4 HOH A 23 230 230 HOH HOH . D 4 HOH A 24 231 231 HOH HOH . D 4 HOH A 25 232 232 HOH HOH . D 4 HOH A 26 233 233 HOH HOH . D 4 HOH A 27 234 234 HOH HOH . D 4 HOH A 28 235 235 HOH HOH . D 4 HOH A 29 236 236 HOH HOH . D 4 HOH A 30 237 237 HOH HOH . D 4 HOH A 31 238 238 HOH HOH . D 4 HOH A 32 239 239 HOH HOH . D 4 HOH A 33 240 240 HOH HOH . D 4 HOH A 34 241 241 HOH HOH . D 4 HOH A 35 242 242 HOH HOH . D 4 HOH A 36 243 243 HOH HOH . D 4 HOH A 37 244 244 HOH HOH . D 4 HOH A 38 245 245 HOH HOH . D 4 HOH A 39 246 246 HOH HOH . D 4 HOH A 40 247 247 HOH HOH . D 4 HOH A 41 248 248 HOH HOH . D 4 HOH A 42 249 249 HOH HOH . D 4 HOH A 43 250 250 HOH HOH . D 4 HOH A 44 251 251 HOH HOH . D 4 HOH A 45 252 252 HOH HOH . D 4 HOH A 46 253 253 HOH HOH . D 4 HOH A 47 254 254 HOH HOH . D 4 HOH A 48 255 255 HOH HOH . D 4 HOH A 49 256 256 HOH HOH . D 4 HOH A 50 257 257 HOH HOH . D 4 HOH A 51 258 258 HOH HOH . D 4 HOH A 52 259 259 HOH HOH . D 4 HOH A 53 260 260 HOH HOH . D 4 HOH A 54 261 261 HOH HOH . D 4 HOH A 55 262 262 HOH HOH . D 4 HOH A 56 263 263 HOH HOH . D 4 HOH A 57 264 264 HOH HOH . D 4 HOH A 58 265 265 HOH HOH . D 4 HOH A 59 266 266 HOH HOH . D 4 HOH A 60 267 267 HOH HOH . D 4 HOH A 61 268 268 HOH HOH . D 4 HOH A 62 269 269 HOH HOH . D 4 HOH A 63 270 270 HOH HOH . D 4 HOH A 64 271 271 HOH HOH . D 4 HOH A 65 272 272 HOH HOH . D 4 HOH A 66 273 273 HOH HOH . D 4 HOH A 67 274 274 HOH HOH . D 4 HOH A 68 275 275 HOH HOH . D 4 HOH A 69 276 276 HOH HOH . D 4 HOH A 70 277 277 HOH HOH . D 4 HOH A 71 278 278 HOH HOH . D 4 HOH A 72 279 279 HOH HOH . D 4 HOH A 73 280 280 HOH HOH . D 4 HOH A 74 281 281 HOH HOH . D 4 HOH A 75 282 282 HOH HOH . D 4 HOH A 76 283 283 HOH HOH . D 4 HOH A 77 284 284 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2B COG . . . C 3 10.371 2.352 12.54 1 14.49 ? C2B COG 307 A 1 HETATM 2 C C4B COG . . . C 3 10.829 4.306 13.877 1 13.15 ? C4B COG 307 A 1 HETATM 3 C C4A COG . . . C 3 11.978 4.556 13.102 1 15.44 ? C4A COG 307 A 1 HETATM 4 C C5B COG . . . C 3 12.814 5.661 13.354 1 18.3 ? C5B COG 307 A 1 HETATM 5 C C6B COG . . . C 3 13.96 5.846 12.555 1 23.03 ? C6B COG 307 A 1 HETATM 6 C C7B COG . . . C 3 14.245 4.962 11.533 1 22.17 ? C7B COG 307 A 1 HETATM 7 C C8A COG . . . C 3 12.279 3.691 12.032 1 16.73 ? C8A COG 307 A 1 HETATM 8 C C21 COG . . . C 3 19.679 6.515 12.439 1 37.16 ? C21 COG 307 A 1 HETATM 9 C C7' COG . . . C 3 16.116 7.073 12.806 1 29.71 ? C7' COG 307 A 1 HETATM 10 C C61 COG . . . C 3 13.785 8.016 13.442 1 24.77 ? C61 COG 307 A 1 HETATM 11 C C1' COG . . . C 3 16.485 7.31 11.333 1 32.5 ? C1' COG 307 A 1 HETATM 12 C C2' COG . . . C 3 17.724 6.879 10.868 1 34.13 ? C2' COG 307 A 1 HETATM 13 C C3' COG . . . C 3 18.07 7.132 9.539 1 34.84 ? C3' COG 307 A 1 HETATM 14 C C4' COG . . . C 3 17.209 7.816 8.696 1 34.63 ? C4' COG 307 A 1 HETATM 15 C C5' COG . . . C 3 15.992 8.272 9.189 1 35.01 ? C5' COG 307 A 1 HETATM 16 C C51 COG . . . C 3 15.51 9.49 7.064 1 35.48 ? C51 COG 307 A 1 HETATM 17 C C6' COG . . . C 3 15.639 8.026 10.51 1 33.37 ? C6' COG 307 A 1 HETATM 18 N N1' COG . . . C 3 11.492 2.593 11.77 1 13.57 ? N1' COG 307 A 1 HETATM 19 N N2' COG . . . C 3 9.524 1.266 12.24 1 14.18 ? N2' COG 307 A 1 HETATM 20 N N3' COG . . . C 3 10.029 3.237 13.586 1 11.15 ? N3' COG 307 A 1 HETATM 21 N N4' COG . . . C 3 10.446 5.087 14.987 1 8.55 ? N4' COG 307 A 1 HETATM 22 C C8' COG . . . C 3 13.437 3.868 11.228 1 18.1 ? C8' COG 307 A 1 HETATM 23 O O2' COG . . . C 3 18.594 6.173 11.63 1 36.31 ? O2' COG 307 A 1 HETATM 24 O O5' COG . . . C 3 15.152 8.945 8.287 1 36.67 ? O5' COG 307 A 1 HETATM 25 N N6' COG . . . C 3 14.684 6.999 12.92 1 27.62 ? N6' COG 307 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #