data_1LY4
#
_model_server_result.job_id            GndIRb6oQmsUmNWDAPkWEg 
_model_server_result.datetime_utc      '2024-11-07 15:40:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ly4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":307}' 
#
_entry.id    1LY4 
#
_exptl.entry_id    1LY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.38 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2,4-DIAMINO-6-[N-(3',5'-DIMETHOXYBENZYL)-N-METHYLAMINO]PYRIDO[2,3-D]PYRIMIDINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.6 
_cell.angle_gamma         90 
_cell.entry_id            1LY4 
_cell.length_a            37.047 
_cell.length_b            43.128 
_cell.length_c            60.73 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H20 N6 O2' 
_chem_comp.formula_weight    340.38 
_chem_comp.id                COQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2,4-DIAMINO-6-[N-(3',5'-DIMETHOXYBENZYL)-N-METHYLAMINO]PYRIDO[2,3-D]PYRIMIDINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2B N1' COQ doub 70 n y 
C2B N2' COQ sing 71 n n 
C2B N3' COQ sing 72 n y 
C4B C4A COQ sing 73 n y 
C4B N3' COQ doub 74 n y 
C4B N4' COQ sing 75 n n 
C4A C5B COQ doub 76 n y 
C4A C8A COQ sing 77 n y 
C5B C6B COQ sing 78 n y 
C5B H5' COQ sing 79 n n 
C6B C7' COQ doub 80 n y 
C6B N9' COQ sing 81 n n 
C7' N8' COQ sing 82 n y 
C7' H7' COQ sing 83 n n 
C8A N1' COQ sing 84 n y 
C8A N8' COQ doub 85 n y 
C9' C1' COQ sing 86 n n 
C9' N9' COQ sing 87 n n 
C9' "H9'1" COQ sing 88 n n 
C9' "H9'2" COQ sing 89 n n 
C1' C2' COQ doub 90 n y 
C1' C6' COQ sing 91 n y 
C2' C3' COQ sing 92 n y 
C2' H2' COQ sing 93 n n 
C3' C4' COQ doub 94 n y 
C3' O3' COQ sing 95 n n 
C4' C5' COQ sing 96 n y 
C4' H4' COQ sing 97 n n 
C5' C6' COQ doub 98 n y 
C5' O5' COQ sing 99 n n 
C6' H6' COQ sing 100 n n 
C31 O3' COQ sing 101 n n 
C31 H311 COQ sing 102 n n 
C31 H312 COQ sing 103 n n 
C31 H313 COQ sing 104 n n 
C51 O5' COQ sing 105 n n 
C51 H511 COQ sing 106 n n 
C51 H512 COQ sing 107 n n 
C51 H513 COQ sing 108 n n 
CN' N9' COQ sing 109 n n 
CN' HCN1 COQ sing 110 n n 
CN' HCN2 COQ sing 111 n n 
CN' HCN3 COQ sing 112 n n 
N2' HN21 COQ sing 113 n n 
N2' HN22 COQ sing 114 n n 
N4' HN41 COQ sing 115 n n 
N4' HN42 COQ sing 116 n n 
#
_atom_sites.entry_id                     1LY4 
_atom_sites.fract_transf_matrix[1][1]    0.026993 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002172 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023187 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01652 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 207 207 NAP NDP . 
C 3 COQ A 1 307 207 COQ COE . 
D 4 HOH A 1 208 208 HOH WAT . 
D 4 HOH A 2 209 209 HOH WAT . 
D 4 HOH A 3 210 210 HOH WAT . 
D 4 HOH A 4 211 211 HOH WAT . 
D 4 HOH A 5 212 212 HOH WAT . 
D 4 HOH A 6 213 213 HOH WAT . 
D 4 HOH A 7 214 214 HOH WAT . 
D 4 HOH A 8 215 215 HOH WAT . 
D 4 HOH A 9 216 216 HOH WAT . 
D 4 HOH A 10 217 217 HOH WAT . 
D 4 HOH A 11 218 218 HOH WAT . 
D 4 HOH A 12 219 219 HOH WAT . 
D 4 HOH A 13 220 220 HOH WAT . 
D 4 HOH A 14 221 221 HOH WAT . 
D 4 HOH A 15 222 222 HOH WAT . 
D 4 HOH A 16 223 223 HOH WAT . 
D 4 HOH A 17 224 224 HOH WAT . 
D 4 HOH A 18 225 225 HOH WAT . 
D 4 HOH A 19 226 226 HOH WAT . 
D 4 HOH A 20 227 227 HOH WAT . 
D 4 HOH A 21 228 228 HOH WAT . 
D 4 HOH A 22 229 229 HOH WAT . 
D 4 HOH A 23 230 230 HOH WAT . 
D 4 HOH A 24 231 231 HOH WAT . 
D 4 HOH A 25 232 232 HOH WAT . 
D 4 HOH A 26 233 233 HOH WAT . 
D 4 HOH A 27 234 234 HOH WAT . 
D 4 HOH A 28 235 235 HOH WAT . 
D 4 HOH A 29 236 236 HOH WAT . 
D 4 HOH A 30 237 237 HOH WAT . 
D 4 HOH A 31 238 238 HOH WAT . 
D 4 HOH A 32 239 239 HOH WAT . 
D 4 HOH A 33 240 240 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2B COQ . . . C 3 10.793 2.314 11.9 1 30.18 ? C2B COQ 307 A 1 
HETATM 2 C C4B COQ . . . C 3 11.219 3.958 13.603 1 31.69 ? C4B COQ 307 A 1 
HETATM 3 C C4A COQ . . . C 3 12.452 4.274 12.991 1 35.17 ? C4A COQ 307 A 1 
HETATM 4 C C5B COQ . . . C 3 13.345 5.254 13.522 1 37.4 ? C5B COQ 307 A 1 
HETATM 5 C C6B COQ . . . C 3 14.58 5.504 12.885 1 38.46 ? C6B COQ 307 A 1 
HETATM 6 C C7' COQ . . . C 3 14.841 4.776 11.699 1 39.13 ? C7' COQ 307 A 1 
HETATM 7 C C8A COQ . . . C 3 12.812 3.543 11.841 1 36.18 ? C8A COQ 307 A 1 
HETATM 8 C C9' COQ . . . C 3 15.194 7.785 12.716 1 37.08 ? C9' COQ 307 A 1 
HETATM 9 C C1' COQ . . . C 3 15.631 7.876 11.242 1 39.9 ? C1' COQ 307 A 1 
HETATM 10 C C2' COQ . . . C 3 16.898 7.512 10.747 1 38.8 ? C2' COQ 307 A 1 
HETATM 11 C C3' COQ . . . C 3 17.165 7.654 9.367 1 40.08 ? C3' COQ 307 A 1 
HETATM 12 C C4' COQ . . . C 3 16.238 8.212 8.478 1 38.43 ? C4' COQ 307 A 1 
HETATM 13 C C5' COQ . . . C 3 15.051 8.679 8.997 1 38.43 ? C5' COQ 307 A 1 
HETATM 14 C C6' COQ . . . C 3 14.724 8.483 10.327 1 39.37 ? C6' COQ 307 A 1 
HETATM 15 C C31 COQ . . . C 3 18.725 6.068 8.195 1 40.47 ? C31 COQ 307 A 1 
HETATM 16 C C51 COQ . . . C 3 14.876 9.361 6.805 1 41.65 ? C51 COQ 307 A 1 
HETATM 17 C CN' COQ . . . C 3 16.536 6.339 14.29 1 37.75 ? CN' COQ 307 A 1 
HETATM 18 N N1' COQ . . . C 3 12.001 2.569 11.342 1 33.44 ? N1' COQ 307 A 1 
HETATM 19 N N2' COQ . . . C 3 9.876 1.383 11.541 1 28.7 ? N2' COQ 307 A 1 
HETATM 20 N N3' COQ . . . C 3 10.474 2.991 13.021 1 28.9 ? N3' COQ 307 A 1 
HETATM 21 N N4' COQ . . . C 3 10.663 4.46 14.738 1 28.2 ? N4' COQ 307 A 1 
HETATM 22 N N8' COQ . . . C 3 13.993 3.797 11.191 1 37.59 ? N8' COQ 307 A 1 
HETATM 23 N N9' COQ . . . C 3 15.434 6.487 13.342 1 38.09 ? N9' COQ 307 A 1 
HETATM 24 O O3' COQ . . . C 3 18.409 7.323 8.797 1 41.6 ? O3' COQ 307 A 1 
HETATM 25 O O5' COQ . . . C 3 14.136 9.212 8.063 1 42.49 ? O5' COQ 307 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#