data_1LYX # _model_server_result.job_id leguBTfHemol5FFVNutd3A _model_server_result.datetime_utc '2024-11-21 22:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 1LYX # _exptl.entry_id 1LYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.74 _cell.angle_gamma 90 _cell.entry_id 1LYX _cell.length_a 88.242 _cell.length_b 63.437 _cell.length_c 53.886 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LYX _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2 A,B,C 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x+1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 44.121 31.7185 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 63.16022 0 47.692822 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 237 n n P O2P PGA doub 238 n n P O3P PGA sing 239 n n P O4P PGA sing 240 n n O1P C2 PGA sing 241 n n O3P HOP3 PGA sing 242 n n O4P HOP4 PGA sing 243 n n C2 C1 PGA sing 244 n n C2 H21 PGA sing 245 n n C2 H22 PGA sing 246 n n C1 O1 PGA doub 247 n n C1 O2 PGA sing 248 n n O2 HO2 PGA sing 249 n n # _atom_sites.entry_id 1LYX _atom_sites.fract_transf_matrix[1][1] 0.011332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00596 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGA A 1 401 401 PGA PGA . C 3 HOH A 1 500 500 HOH HOH . C 3 HOH A 2 501 501 HOH HOH . C 3 HOH A 3 502 502 HOH HOH . C 3 HOH A 4 503 503 HOH HOH . C 3 HOH A 5 504 504 HOH HOH . C 3 HOH A 6 505 505 HOH HOH . C 3 HOH A 7 506 506 HOH HOH . C 3 HOH A 8 507 507 HOH HOH . C 3 HOH A 9 508 508 HOH HOH . C 3 HOH A 10 509 509 HOH HOH . C 3 HOH A 11 510 510 HOH HOH . C 3 HOH A 12 511 511 HOH HOH . C 3 HOH A 13 512 512 HOH HOH . C 3 HOH A 14 513 513 HOH HOH . C 3 HOH A 15 514 514 HOH HOH . C 3 HOH A 16 515 515 HOH HOH . C 3 HOH A 17 516 516 HOH HOH . C 3 HOH A 18 517 517 HOH HOH . C 3 HOH A 19 518 518 HOH HOH . C 3 HOH A 20 519 519 HOH HOH . C 3 HOH A 21 520 520 HOH HOH . C 3 HOH A 22 521 521 HOH HOH . C 3 HOH A 23 522 522 HOH HOH . C 3 HOH A 24 523 523 HOH HOH . C 3 HOH A 25 524 524 HOH HOH . C 3 HOH A 26 525 525 HOH HOH . C 3 HOH A 27 526 526 HOH HOH . C 3 HOH A 28 527 527 HOH HOH . C 3 HOH A 29 528 528 HOH HOH . C 3 HOH A 30 529 529 HOH HOH . C 3 HOH A 31 530 530 HOH HOH . C 3 HOH A 32 531 531 HOH HOH . C 3 HOH A 33 532 532 HOH HOH . C 3 HOH A 34 533 533 HOH HOH . C 3 HOH A 35 534 534 HOH HOH . C 3 HOH A 36 535 535 HOH HOH . C 3 HOH A 37 536 536 HOH HOH . C 3 HOH A 38 537 537 HOH HOH . C 3 HOH A 39 538 538 HOH HOH . C 3 HOH A 40 539 539 HOH HOH . C 3 HOH A 41 540 540 HOH HOH . C 3 HOH A 42 541 541 HOH HOH . C 3 HOH A 43 542 542 HOH HOH . C 3 HOH A 44 543 543 HOH HOH . C 3 HOH A 45 544 544 HOH HOH . C 3 HOH A 46 545 545 HOH HOH . C 3 HOH A 47 546 546 HOH HOH . C 3 HOH A 48 547 547 HOH HOH . C 3 HOH A 49 548 548 HOH HOH . C 3 HOH A 50 549 549 HOH HOH . C 3 HOH A 51 550 550 HOH HOH . C 3 HOH A 52 551 551 HOH HOH . C 3 HOH A 53 552 552 HOH HOH . C 3 HOH A 54 553 553 HOH HOH . C 3 HOH A 55 554 554 HOH HOH . C 3 HOH A 56 555 555 HOH HOH . C 3 HOH A 57 556 556 HOH HOH . C 3 HOH A 58 557 557 HOH HOH . C 3 HOH A 59 558 558 HOH HOH . C 3 HOH A 60 559 559 HOH HOH . C 3 HOH A 61 560 560 HOH HOH . C 3 HOH A 62 561 561 HOH HOH . C 3 HOH A 63 562 562 HOH HOH . C 3 HOH A 64 563 563 HOH HOH . C 3 HOH A 65 564 564 HOH HOH . C 3 HOH A 66 565 565 HOH HOH . C 3 HOH A 67 566 566 HOH HOH . C 3 HOH A 68 567 567 HOH HOH . C 3 HOH A 69 568 568 HOH HOH . C 3 HOH A 70 569 569 HOH HOH . C 3 HOH A 71 570 570 HOH HOH . C 3 HOH A 72 571 571 HOH HOH . C 3 HOH A 73 572 572 HOH HOH . C 3 HOH A 74 573 573 HOH HOH . C 3 HOH A 75 574 574 HOH HOH . C 3 HOH A 76 575 575 HOH HOH . C 3 HOH A 77 576 576 HOH HOH . C 3 HOH A 78 577 577 HOH HOH . C 3 HOH A 79 578 578 HOH HOH . C 3 HOH A 80 579 579 HOH HOH . C 3 HOH A 81 580 580 HOH HOH . C 3 HOH A 82 581 581 HOH HOH . C 3 HOH A 83 582 582 HOH HOH . C 3 HOH A 84 583 583 HOH HOH . C 3 HOH A 85 584 584 HOH HOH . C 3 HOH A 86 585 585 HOH HOH . C 3 HOH A 87 586 586 HOH HOH . C 3 HOH A 88 587 587 HOH HOH . C 3 HOH A 89 588 588 HOH HOH . C 3 HOH A 90 589 589 HOH HOH . C 3 HOH A 91 590 590 HOH HOH . C 3 HOH A 92 591 591 HOH HOH . C 3 HOH A 93 592 592 HOH HOH . C 3 HOH A 94 593 593 HOH HOH . C 3 HOH A 95 594 594 HOH HOH . C 3 HOH A 96 595 595 HOH HOH . C 3 HOH A 97 596 596 HOH HOH . C 3 HOH A 98 597 597 HOH HOH . C 3 HOH A 99 598 598 HOH HOH . C 3 HOH A 100 599 599 HOH HOH . C 3 HOH A 101 600 600 HOH HOH . C 3 HOH A 102 601 601 HOH HOH . C 3 HOH A 103 602 602 HOH HOH . C 3 HOH A 104 603 603 HOH HOH . C 3 HOH A 105 604 604 HOH HOH . C 3 HOH A 106 605 605 HOH HOH . C 3 HOH A 107 606 606 HOH HOH . C 3 HOH A 108 607 607 HOH HOH . C 3 HOH A 109 608 608 HOH HOH . C 3 HOH A 110 609 609 HOH HOH . C 3 HOH A 111 610 610 HOH HOH . C 3 HOH A 112 611 611 HOH HOH . C 3 HOH A 113 612 612 HOH HOH . C 3 HOH A 114 613 613 HOH HOH . C 3 HOH A 115 614 614 HOH HOH . C 3 HOH A 116 615 615 HOH HOH . C 3 HOH A 117 616 616 HOH HOH . C 3 HOH A 118 617 617 HOH HOH . C 3 HOH A 119 618 618 HOH HOH . C 3 HOH A 120 619 619 HOH HOH . C 3 HOH A 121 620 620 HOH HOH . C 3 HOH A 122 621 621 HOH HOH . C 3 HOH A 123 622 622 HOH HOH . C 3 HOH A 124 623 623 HOH HOH . C 3 HOH A 125 624 624 HOH HOH . C 3 HOH A 126 625 625 HOH HOH . C 3 HOH A 127 626 626 HOH HOH . C 3 HOH A 128 627 627 HOH HOH . C 3 HOH A 129 628 628 HOH HOH . C 3 HOH A 130 629 629 HOH HOH . C 3 HOH A 131 630 630 HOH HOH . C 3 HOH A 132 631 631 HOH HOH . C 3 HOH A 133 632 632 HOH HOH . C 3 HOH A 134 633 633 HOH HOH . C 3 HOH A 135 634 634 HOH HOH . C 3 HOH A 136 635 635 HOH HOH . C 3 HOH A 137 636 636 HOH HOH . C 3 HOH A 138 637 637 HOH HOH . C 3 HOH A 139 638 638 HOH HOH . C 3 HOH A 140 639 639 HOH HOH . C 3 HOH A 141 640 640 HOH HOH . C 3 HOH A 142 641 641 HOH HOH . C 3 HOH A 143 642 642 HOH HOH . C 3 HOH A 144 643 643 HOH HOH . C 3 HOH A 145 644 644 HOH HOH . C 3 HOH A 146 645 645 HOH HOH . C 3 HOH A 147 646 646 HOH HOH . C 3 HOH A 148 647 647 HOH HOH . C 3 HOH A 149 648 648 HOH HOH . C 3 HOH A 150 649 649 HOH HOH . C 3 HOH A 151 650 650 HOH HOH . C 3 HOH A 152 651 651 HOH HOH . C 3 HOH A 153 652 652 HOH HOH . C 3 HOH A 154 653 653 HOH HOH . C 3 HOH A 155 654 654 HOH HOH . C 3 HOH A 156 655 655 HOH HOH . C 3 HOH A 157 656 656 HOH HOH . C 3 HOH A 158 657 657 HOH HOH . C 3 HOH A 159 658 658 HOH HOH . C 3 HOH A 160 659 659 HOH HOH . C 3 HOH A 161 660 660 HOH HOH . C 3 HOH A 162 661 661 HOH HOH . C 3 HOH A 163 662 662 HOH HOH . C 3 HOH A 164 663 663 HOH HOH . C 3 HOH A 165 664 664 HOH HOH . C 3 HOH A 166 665 665 HOH HOH . C 3 HOH A 167 666 666 HOH HOH . C 3 HOH A 168 667 667 HOH HOH . C 3 HOH A 169 668 668 HOH HOH . C 3 HOH A 170 669 669 HOH HOH . C 3 HOH A 171 670 670 HOH HOH . C 3 HOH A 172 671 671 HOH HOH . C 3 HOH A 173 672 672 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . B 2 22.125 -1.695 6.149 1 15.92 ? P PGA 401 A 1 HETATM 2 O O1P PGA . . . B 2 21.922 -2.191 7.702 1 19.07 ? O1P PGA 401 A 1 HETATM 3 O O2P PGA . . . B 2 21.802 -2.979 5.433 1 18.43 ? O2P PGA 401 A 1 HETATM 4 O O3P PGA . . . B 2 23.554 -1.262 6.055 1 15 ? O3P PGA 401 A 1 HETATM 5 O O4P PGA . . . B 2 21.101 -0.597 5.998 1 12.78 ? O4P PGA 401 A 1 HETATM 6 C C2 PGA . . . B 2 20.65 -2.203 8.365 1 24.65 ? C2 PGA 401 A 1 HETATM 7 C C1 PGA . . . B 2 20.981 -2.772 9.656 1 29.67 ? C1 PGA 401 A 1 HETATM 8 O O1 PGA . . . B 2 22.098 -2.582 10.405 1 18.75 ? O1 PGA 401 A 1 HETATM 9 O O2 PGA . . . B 2 20.198 -3.636 10.339 1 25.6 ? O2 PGA 401 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #