data_1LZO # _model_server_result.job_id -tqtR4QWzZ_kt1mtJouUmQ _model_server_result.datetime_utc '2024-11-08 08:51:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":9251}' # _entry.id 1LZO # _exptl.entry_id 1LZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.031 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCOLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LZO _cell.length_a 50.821 _cell.length_b 106.771 _cell.length_c 181.219 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LZO _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H5 O6 P' _chem_comp.formula_weight 156.031 _chem_comp.id PGA _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PGA sing 237 n n P O2P PGA doub 238 n n P O3P PGA sing 239 n n P O4P PGA sing 240 n n O1P C2 PGA sing 241 n n O3P HOP3 PGA sing 242 n n O4P HOP4 PGA sing 243 n n C2 C1 PGA sing 244 n n C2 H21 PGA sing 245 n n C2 H22 PGA sing 246 n n C1 O1 PGA doub 247 n n C1 O2 PGA sing 248 n n O2 HO2 PGA sing 249 n n # _atom_sites.entry_id 1LZO _atom_sites.fract_transf_matrix[1][1] 0.019677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PGA B 1 7251 7251 PGA PGA . F 2 PGA D 1 9251 9251 PGA PGA . G 3 HOH A 1 501 501 HOH HOH . G 3 HOH A 2 503 503 HOH HOH . G 3 HOH A 3 505 505 HOH HOH . G 3 HOH A 4 507 507 HOH HOH . G 3 HOH A 5 511 511 HOH HOH . G 3 HOH A 6 514 514 HOH HOH . G 3 HOH A 7 521 521 HOH HOH . G 3 HOH A 8 531 531 HOH HOH . G 3 HOH A 9 547 547 HOH HOH . G 3 HOH A 10 551 551 HOH HOH . G 3 HOH A 11 552 552 HOH HOH . G 3 HOH A 12 554 554 HOH HOH . G 3 HOH A 13 558 558 HOH HOH . G 3 HOH A 14 559 559 HOH HOH . G 3 HOH A 15 564 564 HOH HOH . G 3 HOH A 16 567 567 HOH HOH . G 3 HOH A 17 569 569 HOH HOH . G 3 HOH A 18 570 570 HOH HOH . G 3 HOH A 19 572 572 HOH HOH . G 3 HOH A 20 575 575 HOH HOH . G 3 HOH A 21 576 576 HOH HOH . G 3 HOH A 22 577 577 HOH HOH . G 3 HOH A 23 578 578 HOH HOH . G 3 HOH A 24 581 581 HOH HOH . G 3 HOH A 25 584 584 HOH HOH . G 3 HOH A 26 589 589 HOH HOH . G 3 HOH A 27 590 590 HOH HOH . G 3 HOH A 28 592 592 HOH HOH . G 3 HOH A 29 599 599 HOH HOH . G 3 HOH A 30 602 602 HOH HOH . G 3 HOH A 31 603 603 HOH HOH . G 3 HOH A 32 605 605 HOH HOH . G 3 HOH A 33 609 609 HOH HOH . G 3 HOH A 34 619 619 HOH HOH . G 3 HOH A 35 622 622 HOH HOH . G 3 HOH A 36 623 623 HOH HOH . G 3 HOH A 37 625 625 HOH HOH . G 3 HOH A 38 626 626 HOH HOH . G 3 HOH A 39 627 627 HOH HOH . G 3 HOH A 40 631 631 HOH HOH . G 3 HOH A 41 634 634 HOH HOH . G 3 HOH A 42 637 637 HOH HOH . G 3 HOH A 43 643 643 HOH HOH . G 3 HOH A 44 649 649 HOH HOH . H 3 HOH B 1 506 506 HOH HOH . H 3 HOH B 2 509 509 HOH HOH . H 3 HOH B 3 512 512 HOH HOH . H 3 HOH B 4 518 518 HOH HOH . H 3 HOH B 5 519 519 HOH HOH . H 3 HOH B 6 523 523 HOH HOH . H 3 HOH B 7 525 525 HOH HOH . H 3 HOH B 8 526 526 HOH HOH . H 3 HOH B 9 528 528 HOH HOH . H 3 HOH B 10 534 534 HOH HOH . H 3 HOH B 11 536 536 HOH HOH . H 3 HOH B 12 539 539 HOH HOH . H 3 HOH B 13 542 542 HOH HOH . H 3 HOH B 14 544 544 HOH HOH . H 3 HOH B 15 545 545 HOH HOH . H 3 HOH B 16 546 546 HOH HOH . H 3 HOH B 17 548 548 HOH HOH . H 3 HOH B 18 549 549 HOH HOH . H 3 HOH B 19 556 556 HOH HOH . H 3 HOH B 20 557 557 HOH HOH . H 3 HOH B 21 563 563 HOH HOH . H 3 HOH B 22 565 565 HOH HOH . H 3 HOH B 23 566 566 HOH HOH . H 3 HOH B 24 573 573 HOH HOH . H 3 HOH B 25 580 580 HOH HOH . H 3 HOH B 26 582 582 HOH HOH . H 3 HOH B 27 583 583 HOH HOH . H 3 HOH B 28 585 585 HOH HOH . H 3 HOH B 29 587 587 HOH HOH . H 3 HOH B 30 591 591 HOH HOH . H 3 HOH B 31 596 596 HOH HOH . H 3 HOH B 32 597 597 HOH HOH . H 3 HOH B 33 606 606 HOH HOH . H 3 HOH B 34 608 608 HOH HOH . H 3 HOH B 35 616 616 HOH HOH . H 3 HOH B 36 624 624 HOH HOH . H 3 HOH B 37 632 632 HOH HOH . H 3 HOH B 38 633 633 HOH HOH . H 3 HOH B 39 636 636 HOH HOH . H 3 HOH B 40 641 641 HOH HOH . H 3 HOH B 41 642 642 HOH HOH . H 3 HOH B 42 644 644 HOH HOH . I 3 HOH C 1 500 500 HOH HOH . I 3 HOH C 2 508 508 HOH HOH . I 3 HOH C 3 510 510 HOH HOH . I 3 HOH C 4 513 513 HOH HOH . I 3 HOH C 5 516 516 HOH HOH . I 3 HOH C 6 530 530 HOH HOH . I 3 HOH C 7 535 535 HOH HOH . I 3 HOH C 8 538 538 HOH HOH . I 3 HOH C 9 555 555 HOH HOH . I 3 HOH C 10 560 560 HOH HOH . I 3 HOH C 11 571 571 HOH HOH . I 3 HOH C 12 574 574 HOH HOH . I 3 HOH C 13 588 588 HOH HOH . I 3 HOH C 14 595 595 HOH HOH . I 3 HOH C 15 600 600 HOH HOH . I 3 HOH C 16 604 604 HOH HOH . I 3 HOH C 17 607 607 HOH HOH . I 3 HOH C 18 612 612 HOH HOH . I 3 HOH C 19 613 613 HOH HOH . I 3 HOH C 20 620 620 HOH HOH . I 3 HOH C 21 621 621 HOH HOH . I 3 HOH C 22 628 628 HOH HOH . I 3 HOH C 23 629 629 HOH HOH . I 3 HOH C 24 630 630 HOH HOH . I 3 HOH C 25 638 638 HOH HOH . J 3 HOH D 1 502 502 HOH HOH . J 3 HOH D 2 504 504 HOH HOH . J 3 HOH D 3 515 515 HOH HOH . J 3 HOH D 4 517 517 HOH HOH . J 3 HOH D 5 520 520 HOH HOH . J 3 HOH D 6 522 522 HOH HOH . J 3 HOH D 7 524 524 HOH HOH . J 3 HOH D 8 527 527 HOH HOH . J 3 HOH D 9 529 529 HOH HOH . J 3 HOH D 10 532 532 HOH HOH . J 3 HOH D 11 533 533 HOH HOH . J 3 HOH D 12 537 537 HOH HOH . J 3 HOH D 13 540 540 HOH HOH . J 3 HOH D 14 541 541 HOH HOH . J 3 HOH D 15 543 543 HOH HOH . J 3 HOH D 16 550 550 HOH HOH . J 3 HOH D 17 553 553 HOH HOH . J 3 HOH D 18 561 561 HOH HOH . J 3 HOH D 19 562 562 HOH HOH . J 3 HOH D 20 568 568 HOH HOH . J 3 HOH D 21 579 579 HOH HOH . J 3 HOH D 22 586 586 HOH HOH . J 3 HOH D 23 593 593 HOH HOH . J 3 HOH D 24 594 594 HOH HOH . J 3 HOH D 25 598 598 HOH HOH . J 3 HOH D 26 601 601 HOH HOH . J 3 HOH D 27 610 610 HOH HOH . J 3 HOH D 28 611 611 HOH HOH . J 3 HOH D 29 614 614 HOH HOH . J 3 HOH D 30 615 615 HOH HOH . J 3 HOH D 31 617 617 HOH HOH . J 3 HOH D 32 618 618 HOH HOH . J 3 HOH D 33 635 635 HOH HOH . J 3 HOH D 34 639 639 HOH HOH . J 3 HOH D 35 640 640 HOH HOH . J 3 HOH D 36 645 645 HOH HOH . J 3 HOH D 37 646 646 HOH HOH . J 3 HOH D 38 647 647 HOH HOH . J 3 HOH D 39 648 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGA . . . F 2 48.165 6.107 65.954 1 33.55 ? P PGA 9251 D 1 HETATM 2 O O1P PGA . . . F 2 46.931 5.921 67.03 1 33.55 ? O1P PGA 9251 D 1 HETATM 3 O O2P PGA . . . F 2 49.214 6.792 66.78 1 33.55 ? O2P PGA 9251 D 1 HETATM 4 O O3P PGA . . . F 2 47.568 6.962 64.883 1 33.55 ? O3P PGA 9251 D 1 HETATM 5 O O4P PGA . . . F 2 48.472 4.694 65.546 1 33.55 ? O4P PGA 9251 D 1 HETATM 6 C C2 PGA . . . F 2 46.867 5.007 68.144 1 33.55 ? C2 PGA 9251 D 1 HETATM 7 C C1 PGA . . . F 2 45.538 5.34 68.69 1 33.55 ? C1 PGA 9251 D 1 HETATM 8 O O1 PGA . . . F 2 45.171 6.499 69.336 1 33.55 ? O1 PGA 9251 D 1 HETATM 9 O O2 PGA . . . F 2 44.427 4.543 68.674 1 33.55 ? O2 PGA 9251 D 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 9 #