data_1M01 # _model_server_result.job_id IQqOdyIjVw_JPSPsHHqICQ _model_server_result.datetime_utc '2024-12-27 03:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":512}' # _entry.id 1M01 # _exptl.entry_id 1M01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M01 _cell.length_a 133.276 _cell.length_b 133.276 _cell.length_c 176.204 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -66.638 115.420402 29.367333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 269 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 263 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 288 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 282 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.039 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1M01 _atom_sites.fract_transf_matrix[1][1] 0.007503 _atom_sites.fract_transf_matrix[1][2] 0.004332 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 507 1 NAG NAG . C 3 CL A 1 508 2 CL CL . D 3 CL A 1 509 3 CL CL . E 3 CL A 1 510 4 CL CL . F 4 SO4 A 1 511 8 SO4 SO4 . G 5 GOL A 1 512 5 GOL GOL . H 5 GOL A 1 513 6 GOL GOL . I 5 GOL A 1 514 7 GOL GOL . J 6 HOH A 1 515 1 HOH HOH . J 6 HOH A 2 516 2 HOH HOH . J 6 HOH A 3 517 3 HOH HOH . J 6 HOH A 4 518 4 HOH HOH . J 6 HOH A 5 519 5 HOH HOH . J 6 HOH A 6 520 6 HOH HOH . J 6 HOH A 7 521 7 HOH HOH . J 6 HOH A 8 522 8 HOH HOH . J 6 HOH A 9 523 9 HOH HOH . J 6 HOH A 10 524 10 HOH HOH . J 6 HOH A 11 525 11 HOH HOH . J 6 HOH A 12 526 12 HOH HOH . J 6 HOH A 13 527 13 HOH HOH . J 6 HOH A 14 528 14 HOH HOH . J 6 HOH A 15 529 15 HOH HOH . J 6 HOH A 16 530 16 HOH HOH . J 6 HOH A 17 531 17 HOH HOH . J 6 HOH A 18 532 18 HOH HOH . J 6 HOH A 19 533 19 HOH HOH . J 6 HOH A 20 534 20 HOH HOH . J 6 HOH A 21 535 21 HOH HOH . J 6 HOH A 22 536 22 HOH HOH . J 6 HOH A 23 537 23 HOH HOH . J 6 HOH A 24 538 24 HOH HOH . J 6 HOH A 25 539 25 HOH HOH . J 6 HOH A 26 540 26 HOH HOH . J 6 HOH A 27 541 27 HOH HOH . J 6 HOH A 28 542 28 HOH HOH . J 6 HOH A 29 543 29 HOH HOH . J 6 HOH A 30 544 30 HOH HOH . J 6 HOH A 31 545 31 HOH HOH . J 6 HOH A 32 546 32 HOH HOH . J 6 HOH A 33 547 33 HOH HOH . J 6 HOH A 34 548 34 HOH HOH . J 6 HOH A 35 549 35 HOH HOH . J 6 HOH A 36 550 36 HOH HOH . J 6 HOH A 37 551 37 HOH HOH . J 6 HOH A 38 552 38 HOH HOH . J 6 HOH A 39 553 39 HOH HOH . J 6 HOH A 40 554 40 HOH HOH . J 6 HOH A 41 555 41 HOH HOH . J 6 HOH A 42 556 42 HOH HOH . J 6 HOH A 43 557 43 HOH HOH . J 6 HOH A 44 558 44 HOH HOH . J 6 HOH A 45 559 45 HOH HOH . J 6 HOH A 46 560 46 HOH HOH . J 6 HOH A 47 561 47 HOH HOH . J 6 HOH A 48 562 48 HOH HOH . J 6 HOH A 49 563 49 HOH HOH . J 6 HOH A 50 564 50 HOH HOH . J 6 HOH A 51 565 51 HOH HOH . J 6 HOH A 52 566 52 HOH HOH . J 6 HOH A 53 567 53 HOH HOH . J 6 HOH A 54 568 54 HOH HOH . J 6 HOH A 55 569 55 HOH HOH . J 6 HOH A 56 570 56 HOH HOH . J 6 HOH A 57 571 57 HOH HOH . J 6 HOH A 58 572 58 HOH HOH . J 6 HOH A 59 573 59 HOH HOH . J 6 HOH A 60 574 60 HOH HOH . J 6 HOH A 61 575 61 HOH HOH . J 6 HOH A 62 576 62 HOH HOH . J 6 HOH A 63 577 63 HOH HOH . J 6 HOH A 64 578 64 HOH HOH . J 6 HOH A 65 579 65 HOH HOH . J 6 HOH A 66 580 66 HOH HOH . J 6 HOH A 67 581 67 HOH HOH . J 6 HOH A 68 582 68 HOH HOH . J 6 HOH A 69 583 69 HOH HOH . J 6 HOH A 70 584 70 HOH HOH . J 6 HOH A 71 585 71 HOH HOH . J 6 HOH A 72 586 72 HOH HOH . J 6 HOH A 73 587 73 HOH HOH . J 6 HOH A 74 588 74 HOH HOH . J 6 HOH A 75 589 75 HOH HOH . J 6 HOH A 76 590 76 HOH HOH . J 6 HOH A 77 591 77 HOH HOH . J 6 HOH A 78 592 78 HOH HOH . J 6 HOH A 79 593 79 HOH HOH . J 6 HOH A 80 594 80 HOH HOH . J 6 HOH A 81 595 81 HOH HOH . J 6 HOH A 82 596 82 HOH HOH . J 6 HOH A 83 597 83 HOH HOH . J 6 HOH A 84 598 84 HOH HOH . J 6 HOH A 85 599 85 HOH HOH . J 6 HOH A 86 600 86 HOH HOH . J 6 HOH A 87 601 87 HOH HOH . J 6 HOH A 88 602 88 HOH HOH . J 6 HOH A 89 603 89 HOH HOH . J 6 HOH A 90 604 90 HOH HOH . J 6 HOH A 91 605 91 HOH HOH . J 6 HOH A 92 606 92 HOH HOH . J 6 HOH A 93 607 93 HOH HOH . J 6 HOH A 94 608 94 HOH HOH . J 6 HOH A 95 609 95 HOH HOH . J 6 HOH A 96 610 96 HOH HOH . J 6 HOH A 97 611 97 HOH HOH . J 6 HOH A 98 612 98 HOH HOH . J 6 HOH A 99 613 99 HOH HOH . J 6 HOH A 100 614 100 HOH HOH . J 6 HOH A 101 615 101 HOH HOH . J 6 HOH A 102 616 102 HOH HOH . J 6 HOH A 103 617 103 HOH HOH . J 6 HOH A 104 618 104 HOH HOH . J 6 HOH A 105 619 105 HOH HOH . J 6 HOH A 106 620 106 HOH HOH . J 6 HOH A 107 621 107 HOH HOH . J 6 HOH A 108 622 108 HOH HOH . J 6 HOH A 109 623 109 HOH HOH . J 6 HOH A 110 624 110 HOH HOH . J 6 HOH A 111 625 111 HOH HOH . J 6 HOH A 112 626 112 HOH HOH . J 6 HOH A 113 627 113 HOH HOH . J 6 HOH A 114 628 114 HOH HOH . J 6 HOH A 115 629 115 HOH HOH . J 6 HOH A 116 630 116 HOH HOH . J 6 HOH A 117 631 117 HOH HOH . J 6 HOH A 118 632 118 HOH HOH . J 6 HOH A 119 633 119 HOH HOH . J 6 HOH A 120 634 120 HOH HOH . J 6 HOH A 121 635 121 HOH HOH . J 6 HOH A 122 636 122 HOH HOH . J 6 HOH A 123 637 123 HOH HOH . J 6 HOH A 124 638 124 HOH HOH . J 6 HOH A 125 639 125 HOH HOH . J 6 HOH A 126 640 126 HOH HOH . J 6 HOH A 127 641 127 HOH HOH . J 6 HOH A 128 642 128 HOH HOH . J 6 HOH A 129 643 129 HOH HOH . J 6 HOH A 130 644 130 HOH HOH . J 6 HOH A 131 645 131 HOH HOH . J 6 HOH A 132 646 132 HOH HOH . J 6 HOH A 133 647 133 HOH HOH . J 6 HOH A 134 648 134 HOH HOH . J 6 HOH A 135 649 135 HOH HOH . J 6 HOH A 136 650 136 HOH HOH . J 6 HOH A 137 651 137 HOH HOH . J 6 HOH A 138 652 138 HOH HOH . J 6 HOH A 139 653 139 HOH HOH . J 6 HOH A 140 654 140 HOH HOH . J 6 HOH A 141 655 141 HOH HOH . J 6 HOH A 142 656 142 HOH HOH . J 6 HOH A 143 657 143 HOH HOH . J 6 HOH A 144 658 144 HOH HOH . J 6 HOH A 145 659 145 HOH HOH . J 6 HOH A 146 660 146 HOH HOH . J 6 HOH A 147 661 147 HOH HOH . J 6 HOH A 148 662 148 HOH HOH . J 6 HOH A 149 663 149 HOH HOH . J 6 HOH A 150 664 150 HOH HOH . J 6 HOH A 151 665 151 HOH HOH . J 6 HOH A 152 666 152 HOH HOH . J 6 HOH A 153 667 153 HOH HOH . J 6 HOH A 154 668 154 HOH HOH . J 6 HOH A 155 669 155 HOH HOH . J 6 HOH A 156 670 156 HOH HOH . J 6 HOH A 157 671 157 HOH HOH . J 6 HOH A 158 672 158 HOH HOH . J 6 HOH A 159 673 159 HOH HOH . J 6 HOH A 160 674 160 HOH HOH . J 6 HOH A 161 675 161 HOH HOH . J 6 HOH A 162 676 162 HOH HOH . J 6 HOH A 163 677 163 HOH HOH . J 6 HOH A 164 678 164 HOH HOH . J 6 HOH A 165 679 165 HOH HOH . J 6 HOH A 166 680 166 HOH HOH . J 6 HOH A 167 681 167 HOH HOH . J 6 HOH A 168 682 168 HOH HOH . J 6 HOH A 169 683 169 HOH HOH . J 6 HOH A 170 684 170 HOH HOH . J 6 HOH A 171 685 171 HOH HOH . J 6 HOH A 172 686 172 HOH HOH . J 6 HOH A 173 687 173 HOH HOH . J 6 HOH A 174 688 174 HOH HOH . J 6 HOH A 175 689 175 HOH HOH . J 6 HOH A 176 690 176 HOH HOH . J 6 HOH A 177 691 177 HOH HOH . J 6 HOH A 178 692 178 HOH HOH . J 6 HOH A 179 693 179 HOH HOH . J 6 HOH A 180 694 180 HOH HOH . J 6 HOH A 181 695 181 HOH HOH . J 6 HOH A 182 696 182 HOH HOH . J 6 HOH A 183 697 183 HOH HOH . J 6 HOH A 184 698 184 HOH HOH . J 6 HOH A 185 699 185 HOH HOH . J 6 HOH A 186 700 186 HOH HOH . J 6 HOH A 187 701 187 HOH HOH . J 6 HOH A 188 702 188 HOH HOH . J 6 HOH A 189 703 189 HOH HOH . J 6 HOH A 190 704 190 HOH HOH . J 6 HOH A 191 705 191 HOH HOH . J 6 HOH A 192 706 192 HOH HOH . J 6 HOH A 193 707 193 HOH HOH . J 6 HOH A 194 708 194 HOH HOH . J 6 HOH A 195 709 195 HOH HOH . J 6 HOH A 196 710 196 HOH HOH . J 6 HOH A 197 711 197 HOH HOH . J 6 HOH A 198 712 198 HOH HOH . J 6 HOH A 199 713 199 HOH HOH . J 6 HOH A 200 714 200 HOH HOH . J 6 HOH A 201 715 201 HOH HOH . J 6 HOH A 202 716 202 HOH HOH . J 6 HOH A 203 717 203 HOH HOH . J 6 HOH A 204 718 204 HOH HOH . J 6 HOH A 205 719 205 HOH HOH . J 6 HOH A 206 720 206 HOH HOH . J 6 HOH A 207 721 207 HOH HOH . J 6 HOH A 208 722 208 HOH HOH . J 6 HOH A 209 723 209 HOH HOH . J 6 HOH A 210 724 210 HOH HOH . J 6 HOH A 211 725 211 HOH HOH . J 6 HOH A 212 726 212 HOH HOH . J 6 HOH A 213 727 213 HOH HOH . J 6 HOH A 214 728 214 HOH HOH . J 6 HOH A 215 729 215 HOH HOH . J 6 HOH A 216 730 216 HOH HOH . J 6 HOH A 217 731 217 HOH HOH . J 6 HOH A 218 732 218 HOH HOH . J 6 HOH A 219 733 219 HOH HOH . J 6 HOH A 220 734 220 HOH HOH . J 6 HOH A 221 735 221 HOH HOH . J 6 HOH A 222 736 222 HOH HOH . J 6 HOH A 223 737 223 HOH HOH . J 6 HOH A 224 738 224 HOH HOH . J 6 HOH A 225 739 225 HOH HOH . J 6 HOH A 226 740 226 HOH HOH . J 6 HOH A 227 741 227 HOH HOH . J 6 HOH A 228 742 228 HOH HOH . J 6 HOH A 229 743 229 HOH HOH . J 6 HOH A 230 744 230 HOH HOH . J 6 HOH A 231 745 231 HOH HOH . J 6 HOH A 232 746 232 HOH HOH . J 6 HOH A 233 747 233 HOH HOH . J 6 HOH A 234 748 234 HOH HOH . J 6 HOH A 235 749 235 HOH HOH . J 6 HOH A 236 750 236 HOH HOH . J 6 HOH A 237 751 237 HOH HOH . J 6 HOH A 238 752 238 HOH HOH . J 6 HOH A 239 753 239 HOH HOH . J 6 HOH A 240 754 240 HOH HOH . J 6 HOH A 241 755 241 HOH HOH . J 6 HOH A 242 756 242 HOH HOH . J 6 HOH A 243 757 243 HOH HOH . J 6 HOH A 244 758 244 HOH HOH . J 6 HOH A 245 759 245 HOH HOH . J 6 HOH A 246 760 246 HOH HOH . J 6 HOH A 247 761 247 HOH HOH . J 6 HOH A 248 762 248 HOH HOH . J 6 HOH A 249 763 249 HOH HOH . J 6 HOH A 250 764 250 HOH HOH . J 6 HOH A 251 765 251 HOH HOH . J 6 HOH A 252 766 252 HOH HOH . J 6 HOH A 253 767 253 HOH HOH . J 6 HOH A 254 768 254 HOH HOH . J 6 HOH A 255 769 255 HOH HOH . J 6 HOH A 256 770 256 HOH HOH . J 6 HOH A 257 771 257 HOH HOH . J 6 HOH A 258 772 258 HOH HOH . J 6 HOH A 259 773 259 HOH HOH . J 6 HOH A 260 774 260 HOH HOH . J 6 HOH A 261 775 261 HOH HOH . J 6 HOH A 262 776 262 HOH HOH . J 6 HOH A 263 777 263 HOH HOH . J 6 HOH A 264 778 264 HOH HOH . J 6 HOH A 265 779 265 HOH HOH . J 6 HOH A 266 780 266 HOH HOH . J 6 HOH A 267 781 267 HOH HOH . J 6 HOH A 268 782 268 HOH HOH . J 6 HOH A 269 783 269 HOH HOH . J 6 HOH A 270 784 270 HOH HOH . J 6 HOH A 271 785 271 HOH HOH . J 6 HOH A 272 786 272 HOH HOH . J 6 HOH A 273 787 273 HOH HOH . J 6 HOH A 274 788 274 HOH HOH . J 6 HOH A 275 789 275 HOH HOH . J 6 HOH A 276 790 276 HOH HOH . J 6 HOH A 277 791 277 HOH HOH . J 6 HOH A 278 792 278 HOH HOH . J 6 HOH A 279 793 279 HOH HOH . J 6 HOH A 280 794 280 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 -7.087 68.177 15.775 1 35.48 ? C1 GOL 512 A 1 HETATM 2 O O1 GOL . . . G 5 -6.517 69.394 15.293 1 32.33 ? O1 GOL 512 A 1 HETATM 3 C C2 GOL . . . G 5 -7.133 67.118 14.679 1 36.41 ? C2 GOL 512 A 1 HETATM 4 O O2 GOL . . . G 5 -7.599 65.868 15.209 1 34.95 ? O2 GOL 512 A 1 HETATM 5 C C3 GOL . . . G 5 -5.754 66.963 14.059 1 34.91 ? C3 GOL 512 A 1 HETATM 6 O O3 GOL . . . G 5 -5.486 68.017 13.154 1 32.43 ? O3 GOL 512 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #