data_1M08 # _model_server_result.job_id LwbQD0U5_buvny5CY_G-ww _model_server_result.datetime_utc '2024-11-30 09:19:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 1M08 # _exptl.entry_id 1M08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.8 _cell.angle_beta 103.9 _cell.angle_gamma 91.4 _cell.entry_id 1M08 _cell.length_a 37.7 _cell.length_b 39.2 _cell.length_c 53.2 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 99 A HIS 544 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc2 A NE2 HIS 124 A HIS 569 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 A NE2 HIS 128 A HIS 573 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 C ZN ZN . A ZN 600 1_555 D O1 PO4 . A PO4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? metalc ? metalc5 B ND1 HIS 99 B HIS 544 1_555 E ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc6 B NE2 HIS 124 B HIS 569 1_555 E ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 B NE2 HIS 128 B HIS 573 1_555 E ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc8 E ZN ZN . B ZN 600 1_555 F O1 PO4 . B PO4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 247 n n P O2 PO4 sing 248 n n P O3 PO4 sing 249 n n P O4 PO4 sing 250 n n # _atom_sites.entry_id 1M08 _atom_sites.fract_transf_matrix[1][1] 0.026525 _atom_sites.fract_transf_matrix[1][2] 0.000648 _atom_sites.fract_transf_matrix[1][3] 0.006703 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025518 _atom_sites.fract_transf_matrix[2][3] 0.003295 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 600 600 ZN ZN2 . D 3 PO4 A 1 601 601 PO4 PO4 . E 2 ZN B 1 600 600 ZN ZN2 . F 3 PO4 B 1 601 601 PO4 PO4 . G 4 HOH A 1 713 713 HOH HOH . G 4 HOH A 2 728 728 HOH HOH . G 4 HOH A 3 751 751 HOH HOH . G 4 HOH A 4 760 760 HOH HOH . G 4 HOH A 5 761 761 HOH HOH . G 4 HOH A 6 770 770 HOH HOH . G 4 HOH A 7 805 805 HOH HOH . G 4 HOH A 8 812 812 HOH HOH . G 4 HOH A 9 813 813 HOH HOH . G 4 HOH A 10 814 814 HOH HOH . G 4 HOH A 11 815 815 HOH HOH . G 4 HOH A 12 816 816 HOH HOH . G 4 HOH A 13 817 817 HOH HOH . G 4 HOH A 14 818 818 HOH HOH . G 4 HOH A 15 819 819 HOH HOH . G 4 HOH A 16 820 820 HOH HOH . G 4 HOH A 17 821 821 HOH HOH . G 4 HOH A 18 822 822 HOH HOH . G 4 HOH A 19 823 823 HOH HOH . G 4 HOH A 20 824 824 HOH HOH . G 4 HOH A 21 825 825 HOH HOH . G 4 HOH A 22 826 826 HOH HOH . G 4 HOH A 23 827 827 HOH HOH . G 4 HOH A 24 828 828 HOH HOH . G 4 HOH A 25 829 829 HOH HOH . G 4 HOH A 26 830 830 HOH HOH . G 4 HOH A 27 831 831 HOH HOH . G 4 HOH A 28 832 832 HOH HOH . G 4 HOH A 29 833 833 HOH HOH . G 4 HOH A 30 834 834 HOH HOH . G 4 HOH A 31 835 835 HOH HOH . G 4 HOH A 32 836 836 HOH HOH . G 4 HOH A 33 838 838 HOH HOH . G 4 HOH A 34 839 839 HOH HOH . G 4 HOH A 35 840 840 HOH HOH . G 4 HOH A 36 841 841 HOH HOH . G 4 HOH A 37 842 842 HOH HOH . G 4 HOH A 38 843 843 HOH HOH . G 4 HOH A 39 844 844 HOH HOH . G 4 HOH A 40 845 845 HOH HOH . G 4 HOH A 41 846 846 HOH HOH . G 4 HOH A 42 847 847 HOH HOH . G 4 HOH A 43 848 848 HOH HOH . G 4 HOH A 44 849 849 HOH HOH . G 4 HOH A 45 850 850 HOH HOH . G 4 HOH A 46 851 851 HOH HOH . G 4 HOH A 47 853 853 HOH HOH . G 4 HOH A 48 854 854 HOH HOH . G 4 HOH A 49 855 855 HOH HOH . G 4 HOH A 50 856 856 HOH HOH . G 4 HOH A 51 857 857 HOH HOH . G 4 HOH A 52 858 858 HOH HOH . G 4 HOH A 53 859 859 HOH HOH . G 4 HOH A 54 860 860 HOH HOH . G 4 HOH A 55 861 861 HOH HOH . G 4 HOH A 56 862 862 HOH HOH . G 4 HOH A 57 863 863 HOH HOH . G 4 HOH A 58 864 864 HOH HOH . G 4 HOH A 59 865 865 HOH HOH . G 4 HOH A 60 866 866 HOH HOH . G 4 HOH A 61 867 867 HOH HOH . G 4 HOH A 62 868 868 HOH HOH . G 4 HOH A 63 869 869 HOH HOH . G 4 HOH A 64 870 870 HOH HOH . G 4 HOH A 65 871 871 HOH HOH . G 4 HOH A 66 872 872 HOH HOH . G 4 HOH A 67 873 873 HOH HOH . G 4 HOH A 68 874 874 HOH HOH . G 4 HOH A 69 875 875 HOH HOH . G 4 HOH A 70 876 876 HOH HOH . G 4 HOH A 71 877 877 HOH HOH . G 4 HOH A 72 878 878 HOH HOH . G 4 HOH A 73 879 879 HOH HOH . G 4 HOH A 74 880 880 HOH HOH . G 4 HOH A 75 881 881 HOH HOH . G 4 HOH A 76 882 882 HOH HOH . G 4 HOH A 77 883 883 HOH HOH . G 4 HOH A 78 884 884 HOH HOH . G 4 HOH A 79 885 885 HOH HOH . G 4 HOH A 80 886 886 HOH HOH . G 4 HOH A 81 887 887 HOH HOH . G 4 HOH A 82 888 888 HOH HOH . G 4 HOH A 83 889 889 HOH HOH . G 4 HOH A 84 890 890 HOH HOH . G 4 HOH A 85 891 891 HOH HOH . G 4 HOH A 86 892 892 HOH HOH . G 4 HOH A 87 893 893 HOH HOH . G 4 HOH A 88 894 894 HOH HOH . G 4 HOH A 89 895 895 HOH HOH . G 4 HOH A 90 896 896 HOH HOH . G 4 HOH A 91 897 897 HOH HOH . G 4 HOH A 92 902 902 HOH HOH . G 4 HOH A 93 903 903 HOH HOH . G 4 HOH A 94 905 905 HOH HOH . G 4 HOH A 95 906 906 HOH HOH . G 4 HOH A 96 907 907 HOH HOH . G 4 HOH A 97 909 909 HOH HOH . G 4 HOH A 98 913 913 HOH HOH . G 4 HOH A 99 914 914 HOH HOH . G 4 HOH A 100 916 916 HOH HOH . G 4 HOH A 101 917 917 HOH HOH . G 4 HOH A 102 920 920 HOH HOH . G 4 HOH A 103 921 921 HOH HOH . G 4 HOH A 104 922 922 HOH HOH . H 4 HOH B 1 701 701 HOH HOH . H 4 HOH B 2 702 702 HOH HOH . H 4 HOH B 3 703 703 HOH HOH . H 4 HOH B 4 704 704 HOH HOH . H 4 HOH B 5 705 705 HOH HOH . H 4 HOH B 6 706 706 HOH HOH . H 4 HOH B 7 707 707 HOH HOH . H 4 HOH B 8 708 708 HOH HOH . H 4 HOH B 9 709 709 HOH HOH . H 4 HOH B 10 710 710 HOH HOH . H 4 HOH B 11 711 711 HOH HOH . H 4 HOH B 12 712 712 HOH HOH . H 4 HOH B 13 714 714 HOH HOH . H 4 HOH B 14 715 715 HOH HOH . H 4 HOH B 15 716 716 HOH HOH . H 4 HOH B 16 717 717 HOH HOH . H 4 HOH B 17 718 718 HOH HOH . H 4 HOH B 18 719 719 HOH HOH . H 4 HOH B 19 720 720 HOH HOH . H 4 HOH B 20 721 721 HOH HOH . H 4 HOH B 21 722 722 HOH HOH . H 4 HOH B 22 723 723 HOH HOH . H 4 HOH B 23 724 724 HOH HOH . H 4 HOH B 24 725 725 HOH HOH . H 4 HOH B 25 726 726 HOH HOH . H 4 HOH B 26 727 727 HOH HOH . H 4 HOH B 27 729 729 HOH HOH . H 4 HOH B 28 730 730 HOH HOH . H 4 HOH B 29 731 731 HOH HOH . H 4 HOH B 30 732 732 HOH HOH . H 4 HOH B 31 733 733 HOH HOH . H 4 HOH B 32 734 734 HOH HOH . H 4 HOH B 33 735 735 HOH HOH . H 4 HOH B 34 736 736 HOH HOH . H 4 HOH B 35 737 737 HOH HOH . H 4 HOH B 36 738 738 HOH HOH . H 4 HOH B 37 739 739 HOH HOH . H 4 HOH B 38 740 740 HOH HOH . H 4 HOH B 39 741 741 HOH HOH . H 4 HOH B 40 742 742 HOH HOH . H 4 HOH B 41 743 743 HOH HOH . H 4 HOH B 42 744 744 HOH HOH . H 4 HOH B 43 745 745 HOH HOH . H 4 HOH B 44 746 746 HOH HOH . H 4 HOH B 45 747 747 HOH HOH . H 4 HOH B 46 748 748 HOH HOH . H 4 HOH B 47 749 749 HOH HOH . H 4 HOH B 48 750 750 HOH HOH . H 4 HOH B 49 752 752 HOH HOH . H 4 HOH B 50 753 753 HOH HOH . H 4 HOH B 51 754 754 HOH HOH . H 4 HOH B 52 755 755 HOH HOH . H 4 HOH B 53 756 756 HOH HOH . H 4 HOH B 54 757 757 HOH HOH . H 4 HOH B 55 758 758 HOH HOH . H 4 HOH B 56 759 759 HOH HOH . H 4 HOH B 57 762 762 HOH HOH . H 4 HOH B 58 763 763 HOH HOH . H 4 HOH B 59 764 764 HOH HOH . H 4 HOH B 60 765 765 HOH HOH . H 4 HOH B 61 766 766 HOH HOH . H 4 HOH B 62 767 767 HOH HOH . H 4 HOH B 63 768 768 HOH HOH . H 4 HOH B 64 769 769 HOH HOH . H 4 HOH B 65 771 771 HOH HOH . H 4 HOH B 66 772 772 HOH HOH . H 4 HOH B 67 773 773 HOH HOH . H 4 HOH B 68 774 774 HOH HOH . H 4 HOH B 69 775 775 HOH HOH . H 4 HOH B 70 776 776 HOH HOH . H 4 HOH B 71 777 777 HOH HOH . H 4 HOH B 72 778 778 HOH HOH . H 4 HOH B 73 779 779 HOH HOH . H 4 HOH B 74 780 780 HOH HOH . H 4 HOH B 75 781 781 HOH HOH . H 4 HOH B 76 782 782 HOH HOH . H 4 HOH B 77 783 783 HOH HOH . H 4 HOH B 78 784 784 HOH HOH . H 4 HOH B 79 785 785 HOH HOH . H 4 HOH B 80 786 786 HOH HOH . H 4 HOH B 81 787 787 HOH HOH . H 4 HOH B 82 788 788 HOH HOH . H 4 HOH B 83 789 789 HOH HOH . H 4 HOH B 84 790 790 HOH HOH . H 4 HOH B 85 791 791 HOH HOH . H 4 HOH B 86 792 792 HOH HOH . H 4 HOH B 87 793 793 HOH HOH . H 4 HOH B 88 794 794 HOH HOH . H 4 HOH B 89 795 795 HOH HOH . H 4 HOH B 90 796 796 HOH HOH . H 4 HOH B 91 797 797 HOH HOH . H 4 HOH B 92 798 798 HOH HOH . H 4 HOH B 93 799 799 HOH HOH . H 4 HOH B 94 800 800 HOH HOH . H 4 HOH B 95 801 801 HOH HOH . H 4 HOH B 96 802 802 HOH HOH . H 4 HOH B 97 803 803 HOH HOH . H 4 HOH B 98 804 804 HOH HOH . H 4 HOH B 99 806 806 HOH HOH . H 4 HOH B 100 807 807 HOH HOH . H 4 HOH B 101 808 808 HOH HOH . H 4 HOH B 102 809 809 HOH HOH . H 4 HOH B 103 810 810 HOH HOH . H 4 HOH B 104 811 811 HOH HOH . H 4 HOH B 105 837 837 HOH HOH . H 4 HOH B 106 852 852 HOH HOH . H 4 HOH B 107 898 898 HOH HOH . H 4 HOH B 108 899 899 HOH HOH . H 4 HOH B 109 900 900 HOH HOH . H 4 HOH B 110 901 901 HOH HOH . H 4 HOH B 111 904 904 HOH HOH . H 4 HOH B 112 908 908 HOH HOH . H 4 HOH B 113 910 910 HOH HOH . H 4 HOH B 114 911 911 HOH HOH . H 4 HOH B 115 912 912 HOH HOH . H 4 HOH B 116 915 915 HOH HOH . H 4 HOH B 117 918 918 HOH HOH . H 4 HOH B 118 919 919 HOH HOH . H 4 HOH B 119 923 923 HOH HOH . H 4 HOH B 120 924 924 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 3 10.044 36.031 33.729 1 29.47 ? P PO4 601 B 1 HETATM 2 O O1 PO4 . . . F 3 9.312 37.035 32.924 1 26.48 ? O1 PO4 601 B 1 HETATM 3 O O2 PO4 . . . F 3 9.646 34.676 33.309 1 30.01 ? O2 PO4 601 B 1 HETATM 4 O O3 PO4 . . . F 3 11.501 36.194 33.53 1 31.78 ? O3 PO4 601 B 1 HETATM 5 O O4 PO4 . . . F 3 9.721 36.226 35.156 1 33.44 ? O4 PO4 601 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 5 #