data_1M0K # _model_server_result.job_id hFBrkjY2R4BoClZIfXfK_A _model_server_result.datetime_utc '2024-10-18 19:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1M0K # _exptl.entry_id 1M0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M0K _cell.length_a 61.179 _cell.length_b 61.179 _cell.length_c 111.146 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.5895 52.982568 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.5895 52.982568 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C15 _struct_conn.ptnr1_label_comp_id RET _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id RET _struct_conn.ptnr1_auth_seq_id 301 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id NZ _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 229 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 216 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.321 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1M0K _atom_sites.fract_transf_matrix[1][1] 0.016345 _atom_sites.fract_transf_matrix[1][2] 0.009437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LI1 A 1 601 601 LI1 LI1 . D 3 LI1 A 1 602 602 LI1 LI1 . E 3 LI1 A 1 603 603 LI1 LI1 . F 3 LI1 A 1 604 604 LI1 LI1 . G 3 LI1 A 1 605 605 LI1 LI1 . H 3 LI1 A 1 606 606 LI1 LI1 . I 3 LI1 A 1 607 607 LI1 LI1 . J 3 LI1 A 1 608 608 LI1 LI1 . K 3 LI1 A 1 609 609 LI1 LI1 . L 3 LI1 A 1 610 610 LI1 LI1 . M 3 LI1 A 1 611 611 LI1 LI1 . N 3 LI1 A 1 612 612 LI1 LI1 . O 3 LI1 A 1 613 613 LI1 LI1 . P 4 SQU A 1 701 701 SQU SQU . Q 5 HOH A 1 401 401 HOH HOH . Q 5 HOH A 2 402 402 HOH HOH . Q 5 HOH A 3 403 403 HOH HOH . Q 5 HOH A 4 404 404 HOH HOH . Q 5 HOH A 5 405 405 HOH HOH . Q 5 HOH A 6 406 406 HOH HOH . Q 5 HOH A 7 407 407 HOH HOH . Q 5 HOH A 8 411 411 HOH HOH . Q 5 HOH A 9 412 412 HOH HOH . Q 5 HOH A 10 413 413 HOH HOH . Q 5 HOH A 11 414 414 HOH HOH . Q 5 HOH A 12 415 415 HOH HOH . Q 5 HOH A 13 416 416 HOH HOH . Q 5 HOH A 14 417 417 HOH HOH . Q 5 HOH A 15 418 418 HOH HOH . Q 5 HOH A 16 419 419 HOH HOH . Q 5 HOH A 17 420 420 HOH HOH . Q 5 HOH A 18 501 501 HOH HOH . Q 5 HOH A 19 502 502 HOH HOH . Q 5 HOH A 20 511 511 HOH HOH . Q 5 HOH A 21 512 512 HOH HOH . Q 5 HOH A 22 513 513 HOH HOH . Q 5 HOH A 23 514 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 14.929 45.533 0.313 0.6 16.84 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 14.742 46.484 -0.867 0.6 19.02 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 14.114 47.761 -0.599 0.6 20.71 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 14.783 48.466 0.563 0.6 14.7 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 15.038 47.568 1.748 0.6 15.51 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 15.204 46.245 1.638 0.6 13.85 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 15.625 45.528 2.827 0.6 13.94 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 15.766 44.205 3.032 0.6 15.08 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 16.223 43.557 4.246 0.6 12.34 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 16.39 42.21 4.108 0.6 14.17 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 16.933 41.412 5.232 0.6 15.97 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 17.16 40.1 4.941 0.6 18.77 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 17.467 39.105 5.944 0.6 20.01 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 17.583 37.866 5.404 0.6 21.36 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 17.415 36.635 6.146 0.6 24.53 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 13.703 44.603 0.443 0.6 17.37 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 16.147 44.664 -0.189 0.6 14.57 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 15.257 48.421 2.974 0.6 16.33 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 16.575 44.348 5.449 0.6 13.88 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 17.884 39.478 7.337 0.6 23.22 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 603 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 20 #