data_1M0K # _model_server_result.job_id qCoXZRmBJqyBqsHcQFlLlQ _model_server_result.datetime_utc '2024-10-18 19:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 1M0K # _exptl.entry_id 1M0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 639.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M0K _cell.length_a 61.179 _cell.length_b 61.179 _cell.length_c 111.146 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.5895 52.982568 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.5895 52.982568 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C15 _struct_conn.ptnr1_label_comp_id RET _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id RET _struct_conn.ptnr1_auth_seq_id 301 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id NZ _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 229 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 216 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.321 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H86 O3' _chem_comp.formula_weight 639.13 _chem_comp.id LI1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # _atom_sites.entry_id 1M0K _atom_sites.fract_transf_matrix[1][1] 0.016345 _atom_sites.fract_transf_matrix[1][2] 0.009437 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LI1 A 1 601 601 LI1 LI1 . D 3 LI1 A 1 602 602 LI1 LI1 . E 3 LI1 A 1 603 603 LI1 LI1 . F 3 LI1 A 1 604 604 LI1 LI1 . G 3 LI1 A 1 605 605 LI1 LI1 . H 3 LI1 A 1 606 606 LI1 LI1 . I 3 LI1 A 1 607 607 LI1 LI1 . J 3 LI1 A 1 608 608 LI1 LI1 . K 3 LI1 A 1 609 609 LI1 LI1 . L 3 LI1 A 1 610 610 LI1 LI1 . M 3 LI1 A 1 611 611 LI1 LI1 . N 3 LI1 A 1 612 612 LI1 LI1 . O 3 LI1 A 1 613 613 LI1 LI1 . P 4 SQU A 1 701 701 SQU SQU . Q 5 HOH A 1 401 401 HOH HOH . Q 5 HOH A 2 402 402 HOH HOH . Q 5 HOH A 3 403 403 HOH HOH . Q 5 HOH A 4 404 404 HOH HOH . Q 5 HOH A 5 405 405 HOH HOH . Q 5 HOH A 6 406 406 HOH HOH . Q 5 HOH A 7 407 407 HOH HOH . Q 5 HOH A 8 411 411 HOH HOH . Q 5 HOH A 9 412 412 HOH HOH . Q 5 HOH A 10 413 413 HOH HOH . Q 5 HOH A 11 414 414 HOH HOH . Q 5 HOH A 12 415 415 HOH HOH . Q 5 HOH A 13 416 416 HOH HOH . Q 5 HOH A 14 417 417 HOH HOH . Q 5 HOH A 15 418 418 HOH HOH . Q 5 HOH A 16 419 419 HOH HOH . Q 5 HOH A 17 420 420 HOH HOH . Q 5 HOH A 18 501 501 HOH HOH . Q 5 HOH A 19 502 502 HOH HOH . Q 5 HOH A 20 511 511 HOH HOH . Q 5 HOH A 21 512 512 HOH HOH . Q 5 HOH A 22 513 513 HOH HOH . Q 5 HOH A 23 514 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LI1 . . . C 3 4.112 63.731 -8.433 0.6 92.35 ? C1 LI1 601 A 1 HETATM 2 C C2 LI1 . . . C 3 4.264 65.226 -8.081 0.6 81.9 ? C2 LI1 601 A 1 HETATM 3 C C3 LI1 . . . C 3 5.699 65.683 -8.433 0.6 85.67 ? C3 LI1 601 A 1 HETATM 4 O O1 LI1 . . . C 3 3.166 63.614 -9.545 0.6 98.81 ? O1 LI1 601 A 1 HETATM 5 O O2 LI1 . . . C 3 4.047 65.384 -6.657 0.6 75.98 ? O2 LI1 601 A 1 HETATM 6 O O3 LI1 . . . C 3 5.716 65.703 -9.982 0.6 94.26 ? O3 LI1 601 A 1 HETATM 7 C C41 LI1 . . . C 3 5.01 64.689 -5.822 0.6 75.72 ? C41 LI1 601 A 1 HETATM 8 C C42 LI1 . . . C 3 4.884 65.117 -4.344 0.6 76.07 ? C42 LI1 601 A 1 HETATM 9 C C43 LI1 . . . C 3 5.939 64.372 -3.506 0.6 78.19 ? C43 LI1 601 A 1 HETATM 10 C C45 LI1 . . . C 3 5.514 64.337 -2.024 0.6 77.05 ? C45 LI1 601 A 1 HETATM 11 C C46 LI1 . . . C 3 6.609 63.591 -1.232 0.6 80.93 ? C46 LI1 601 A 1 HETATM 12 C C47 LI1 . . . C 3 5.999 62.905 0 0.6 81.91 ? C47 LI1 601 A 1 HETATM 13 C C48 LI1 . . . C 3 6.955 63.075 1.197 0.6 79.42 ? C48 LI1 601 A 1 HETATM 14 C C50 LI1 . . . C 3 8.342 63.519 0.686 0.6 77.93 ? C50 LI1 601 A 1 HETATM 15 C C11 LI1 . . . C 3 3.709 62.928 -10.7 0.6 96.93 ? C11 LI1 601 A 1 HETATM 16 C C12 LI1 . . . C 3 3.073 61.546 -10.97 0.6 87.16 ? C12 LI1 601 A 1 HETATM 17 C C13 LI1 . . . C 3 3.727 60.476 -10.062 0.6 76.53 ? C13 LI1 601 A 1 HETATM 18 C C15 LI1 . . . C 3 3.088 60.612 -8.661 0.6 64.49 ? C15 LI1 601 A 1 HETATM 19 C C16 LI1 . . . C 3 4.141 60.364 -7.575 0.6 56.77 ? C16 LI1 601 A 1 HETATM 20 C C17 LI1 . . . C 3 3.598 60.723 -6.166 0.6 50.82 ? C17 LI1 601 A 1 HETATM 21 C C18 LI1 . . . C 3 4.125 59.656 -5.187 0.6 39.83 ? C18 LI1 601 A 1 HETATM 22 C C19 LI1 . . . C 3 5.255 58.944 -5.947 0.6 38.58 ? C19 LI1 601 A 1 HETATM 23 C C20 LI1 . . . C 3 4.623 60.197 -3.858 0.6 42.14 ? C20 LI1 601 A 1 HETATM 24 C C21 LI1 . . . C 3 3.733 59.74 -2.693 0.6 40.83 ? C21 LI1 601 A 1 HETATM 25 C C22 LI1 . . . C 3 4.53 59.78 -1.385 0.6 47.13 ? C22 LI1 601 A 1 HETATM 26 C C23 LI1 . . . C 3 5.966 59.279 -1.647 0.6 62.13 ? C23 LI1 601 A 1 HETATM 27 C C25 LI1 . . . C 3 6.577 58.596 -0.413 0.6 66.53 ? C25 LI1 601 A 1 HETATM 28 C C26 LI1 . . . C 3 8.287 58.632 -0.702 0.6 67.71 ? C26 LI1 601 A 1 HETATM 29 C C27 LI1 . . . C 3 8.816 57.638 0.326 0.6 73.44 ? C27 LI1 601 A 1 HETATM 30 C C28 LI1 . . . C 3 8.775 58.111 1.774 0.6 72.48 ? C28 LI1 601 A 1 HETATM 31 C C29 LI1 . . . C 3 8.644 56.93 2.745 0.6 81.83 ? C29 LI1 601 A 1 HETATM 32 C C30 LI1 . . . C 3 10.105 58.845 2.082 0.6 56.04 ? C30 LI1 601 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 618 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #