data_1M0L # _model_server_result.job_id giXZIRw36bZL6F1bGJGMPg _model_server_result.datetime_utc '2024-10-31 07:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 1M0L # _exptl.entry_id 1M0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 639.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M0L _cell.length_a 60.94 _cell.length_b 60.94 _cell.length_c 110.55 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.47 52.775588 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.47 52.775588 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id P _struct_conn.ptnr1_label_atom_id C15 _struct_conn.ptnr1_label_comp_id RET _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id RET _struct_conn.ptnr1_auth_seq_id 301 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id NZ _struct_conn.ptnr2_label_comp_id LYS _struct_conn.ptnr2_label_seq_id 229 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LYS _struct_conn.ptnr2_auth_seq_id 216 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.321 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H86 O3' _chem_comp.formula_weight 639.13 _chem_comp.id LI1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # _atom_sites.entry_id 1M0L _atom_sites.fract_transf_matrix[1][1] 0.01641 _atom_sites.fract_transf_matrix[1][2] 0.009474 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 601 601 LI1 LI1 . C 2 LI1 A 1 602 602 LI1 LI1 . D 2 LI1 A 1 603 603 LI1 LI1 . E 2 LI1 A 1 604 604 LI1 LI1 . F 2 LI1 A 1 605 605 LI1 LI1 . G 2 LI1 A 1 606 606 LI1 LI1 . H 2 LI1 A 1 607 607 LI1 LI1 . I 2 LI1 A 1 608 608 LI1 LI1 . J 2 LI1 A 1 609 609 LI1 LI1 . K 2 LI1 A 1 610 610 LI1 LI1 . L 2 LI1 A 1 611 611 LI1 LI1 . M 2 LI1 A 1 612 612 LI1 LI1 . N 2 LI1 A 1 613 613 LI1 LI1 . O 3 SQU A 1 701 701 SQU SQU . P 4 RET A 1 301 301 RET RET . Q 5 HOH A 1 401 401 HOH HOH . Q 5 HOH A 2 402 402 HOH HOH . Q 5 HOH A 3 403 403 HOH HOH . Q 5 HOH A 4 404 404 HOH HOH . Q 5 HOH A 5 405 405 HOH HOH . Q 5 HOH A 6 406 406 HOH HOH . Q 5 HOH A 7 407 407 HOH HOH . Q 5 HOH A 8 411 411 HOH HOH . Q 5 HOH A 9 412 412 HOH HOH . Q 5 HOH A 10 413 413 HOH HOH . Q 5 HOH A 11 414 414 HOH HOH . Q 5 HOH A 12 415 415 HOH HOH . Q 5 HOH A 13 416 416 HOH HOH . Q 5 HOH A 14 417 417 HOH HOH . Q 5 HOH A 15 418 418 HOH HOH . Q 5 HOH A 16 419 419 HOH HOH . Q 5 HOH A 17 420 420 HOH HOH . Q 5 HOH A 18 501 501 HOH HOH . Q 5 HOH A 19 502 502 HOH HOH . Q 5 HOH A 20 511 511 HOH HOH . Q 5 HOH A 21 512 512 HOH HOH . Q 5 HOH A 22 513 513 HOH HOH . Q 5 HOH A 23 514 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LI1 . . . C 2 16.119 55.943 -16.773 1 78.19 ? C1 LI1 602 A 1 HETATM 2 C C2 LI1 . . . C 2 16.585 57.289 -17.357 1 86.06 ? C2 LI1 602 A 1 HETATM 3 C C3 LI1 . . . C 2 15.688 57.653 -18.563 1 87.67 ? C3 LI1 602 A 1 HETATM 4 O O1 LI1 . . . C 2 16.767 54.875 -17.513 1 75.65 ? O1 LI1 602 A 1 HETATM 5 O O2 LI1 . . . C 2 16.471 58.328 -16.351 1 83.25 ? O2 LI1 602 A 1 HETATM 6 O O3 LI1 . . . C 2 14.505 58.411 -17.928 1 86.92 ? O3 LI1 602 A 1 HETATM 7 C C41 LI1 . . . C 2 17.118 58.048 -15.081 1 72.37 ? C41 LI1 602 A 1 HETATM 8 C C42 LI1 . . . C 2 16.088 57.687 -13.987 1 70.25 ? C42 LI1 602 A 1 HETATM 9 C C43 LI1 . . . C 2 16.244 58.654 -12.79 1 64 ? C43 LI1 602 A 1 HETATM 10 C C44 LI1 . . . C 2 17.7 59.185 -12.805 1 35.53 ? C44 LI1 602 A 1 HETATM 11 C C45 LI1 . . . C 2 15.898 57.927 -11.488 1 67.66 ? C45 LI1 602 A 1 HETATM 12 C C46 LI1 . . . C 2 14.81 58.659 -10.684 1 70.81 ? C46 LI1 602 A 1 HETATM 13 C C47 LI1 . . . C 2 14.735 58.135 -9.233 1 76.28 ? C47 LI1 602 A 1 HETATM 14 C C48 LI1 . . . C 2 14.816 59.333 -8.242 1 81.34 ? C48 LI1 602 A 1 HETATM 15 C C49 LI1 . . . C 2 14.063 59.88 -9.481 1 44.35 ? C49 LI1 602 A 1 HETATM 16 C C50 LI1 . . . C 2 14.313 58.937 -6.815 1 80.19 ? C50 LI1 602 A 1 HETATM 17 C C51 LI1 . . . C 2 12.799 58.666 -6.978 1 67.79 ? C51 LI1 602 A 1 HETATM 18 C C52 LI1 . . . C 2 12.221 57.808 -5.831 1 65.39 ? C52 LI1 602 A 1 HETATM 19 C C53 LI1 . . . C 2 11.025 58.629 -5.291 1 77.43 ? C53 LI1 602 A 1 HETATM 20 C C55 LI1 . . . C 2 10.57 58.074 -3.938 1 80.82 ? C55 LI1 602 A 1 HETATM 21 C C56 LI1 . . . C 2 10.632 59.181 -2.86 1 70.79 ? C56 LI1 602 A 1 HETATM 22 C C57 LI1 . . . C 2 12.037 59.128 -2.224 1 72.08 ? C57 LI1 602 A 1 HETATM 23 C C58 LI1 . . . C 2 12.843 60.346 -2.73 1 78.99 ? C58 LI1 602 A 1 HETATM 24 C C59 LI1 . . . C 2 13.812 59.89 -3.839 1 83.99 ? C59 LI1 602 A 1 HETATM 25 C C60 LI1 . . . C 2 13.583 60.924 -1.513 1 71.85 ? C60 LI1 602 A 1 HETATM 26 C C11 LI1 . . . C 2 17.69 54.069 -16.732 1 68.96 ? C11 LI1 602 A 1 HETATM 27 C C12 LI1 . . . C 2 18.749 54.883 -15.967 1 58.67 ? C12 LI1 602 A 1 HETATM 28 C C13 LI1 . . . C 2 19.172 54.177 -14.672 1 58.04 ? C13 LI1 602 A 1 HETATM 29 C C14 LI1 . . . C 2 20.499 53.417 -14.827 1 70.58 ? C14 LI1 602 A 1 HETATM 30 C C15 LI1 . . . C 2 19.263 55.214 -13.539 1 51.46 ? C15 LI1 602 A 1 HETATM 31 C C16 LI1 . . . C 2 18.939 54.565 -12.193 1 51.07 ? C16 LI1 602 A 1 HETATM 32 C C17 LI1 . . . C 2 18.146 55.521 -11.276 1 46.36 ? C17 LI1 602 A 1 HETATM 33 C C18 LI1 . . . C 2 18.743 55.478 -9.867 1 31.83 ? C18 LI1 602 A 1 HETATM 34 C C20 LI1 . . . C 2 17.859 56.118 -8.797 1 32.55 ? C20 LI1 602 A 1 HETATM 35 C C21 LI1 . . . C 2 18.662 56.107 -7.49 1 38.35 ? C21 LI1 602 A 1 HETATM 36 C C22 LI1 . . . C 2 17.787 56.297 -6.243 1 40.1 ? C22 LI1 602 A 1 HETATM 37 C C23 LI1 . . . C 2 18.719 56.674 -5.074 1 40.98 ? C23 LI1 602 A 1 HETATM 38 C C24 LI1 . . . C 2 19.465 57.949 -5.477 1 49.26 ? C24 LI1 602 A 1 HETATM 39 C C25 LI1 . . . C 2 17.973 57.198 -3.852 1 44.86 ? C25 LI1 602 A 1 HETATM 40 C C26 LI1 . . . C 2 19.222 57.445 -2.675 1 47.96 ? C26 LI1 602 A 1 HETATM 41 C C27 LI1 . . . C 2 18.544 58.419 -1.696 1 41.07 ? C27 LI1 602 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #