data_1M0L # _model_server_result.job_id '_ucgjbiEnZdAmInQm7YP8g' _model_server_result.datetime_utc '2024-11-21 14:23:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 1M0L # _exptl.entry_id 1M0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 639.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M0L _cell.length_a 60.94 _cell.length_b 60.94 _cell.length_c 110.55 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.47 52.775588 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.47 52.775588 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 229 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id P _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.321 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H86 O3' _chem_comp.formula_weight 639.13 _chem_comp.id LI1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LI1 sing 160 n n C1 O1 LI1 sing 161 n n C1 H11 LI1 sing 162 n n C1 H12 LI1 sing 163 n n C2 C3 LI1 sing 164 n n C2 O2 LI1 sing 165 n n C2 H2 LI1 sing 166 n n C3 O3 LI1 sing 167 n n C3 H31 LI1 sing 168 n n C3 H32 LI1 sing 169 n n O1 C11 LI1 sing 170 n n O2 C41 LI1 sing 171 n n O3 HO3 LI1 sing 172 n n C41 C42 LI1 sing 173 n n C41 H411 LI1 sing 174 n n C41 H412 LI1 sing 175 n n C42 C43 LI1 sing 176 n n C42 H421 LI1 sing 177 n n C42 H422 LI1 sing 178 n n C43 C44 LI1 sing 179 n n C43 C45 LI1 sing 180 n n C43 H43 LI1 sing 181 n n C44 H441 LI1 sing 182 n n C44 H442 LI1 sing 183 n n C44 H443 LI1 sing 184 n n C45 C46 LI1 sing 185 n n C45 H451 LI1 sing 186 n n C45 H452 LI1 sing 187 n n C46 C47 LI1 sing 188 n n C46 H461 LI1 sing 189 n n C46 H462 LI1 sing 190 n n C47 C48 LI1 sing 191 n n C47 H471 LI1 sing 192 n n C47 H472 LI1 sing 193 n n C48 C49 LI1 sing 194 n n C48 C50 LI1 sing 195 n n C48 H48 LI1 sing 196 n n C49 H491 LI1 sing 197 n n C49 H492 LI1 sing 198 n n C49 H493 LI1 sing 199 n n C50 C51 LI1 sing 200 n n C50 H501 LI1 sing 201 n n C50 H502 LI1 sing 202 n n C51 C52 LI1 sing 203 n n C51 H511 LI1 sing 204 n n C51 H512 LI1 sing 205 n n C52 C53 LI1 sing 206 n n C52 H521 LI1 sing 207 n n C52 H522 LI1 sing 208 n n C53 C55 LI1 sing 209 n n C53 H531 LI1 sing 210 n n C53 H532 LI1 sing 211 n n C55 C56 LI1 sing 212 n n C55 H551 LI1 sing 213 n n C55 H552 LI1 sing 214 n n C56 C57 LI1 sing 215 n n C56 H561 LI1 sing 216 n n C56 H562 LI1 sing 217 n n C57 C58 LI1 sing 218 n n C57 H571 LI1 sing 219 n n C57 H572 LI1 sing 220 n n C58 C59 LI1 sing 221 n n C58 C60 LI1 sing 222 n n C58 H58 LI1 sing 223 n n C59 H591 LI1 sing 224 n n C59 H592 LI1 sing 225 n n C59 H593 LI1 sing 226 n n C60 H601 LI1 sing 227 n n C60 H602 LI1 sing 228 n n C60 H603 LI1 sing 229 n n C11 C12 LI1 sing 230 n n C11 H111 LI1 sing 231 n n C11 H112 LI1 sing 232 n n C12 C13 LI1 sing 233 n n C12 H121 LI1 sing 234 n n C12 H122 LI1 sing 235 n n C13 C14 LI1 sing 236 n n C13 C15 LI1 sing 237 n n C13 H13 LI1 sing 238 n n C14 H141 LI1 sing 239 n n C14 H142 LI1 sing 240 n n C14 H143 LI1 sing 241 n n C15 C16 LI1 sing 242 n n C15 H151 LI1 sing 243 n n C15 H152 LI1 sing 244 n n C16 C17 LI1 sing 245 n n C16 H161 LI1 sing 246 n n C16 H162 LI1 sing 247 n n C17 C18 LI1 sing 248 n n C17 H171 LI1 sing 249 n n C17 H172 LI1 sing 250 n n C18 C19 LI1 sing 251 n n C18 C20 LI1 sing 252 n n C18 H18 LI1 sing 253 n n C19 H191 LI1 sing 254 n n C19 H192 LI1 sing 255 n n C19 H193 LI1 sing 256 n n C20 C21 LI1 sing 257 n n C20 H201 LI1 sing 258 n n C20 H202 LI1 sing 259 n n C21 C22 LI1 sing 260 n n C21 H211 LI1 sing 261 n n C21 H212 LI1 sing 262 n n C22 C23 LI1 sing 263 n n C22 H221 LI1 sing 264 n n C22 H222 LI1 sing 265 n n C23 C24 LI1 sing 266 n n C23 C25 LI1 sing 267 n n C23 H23 LI1 sing 268 n n C24 H241 LI1 sing 269 n n C24 H242 LI1 sing 270 n n C24 H243 LI1 sing 271 n n C25 C26 LI1 sing 272 n n C25 H251 LI1 sing 273 n n C25 H252 LI1 sing 274 n n C26 C27 LI1 sing 275 n n C26 H261 LI1 sing 276 n n C26 H262 LI1 sing 277 n n C27 C28 LI1 sing 278 n n C27 H271 LI1 sing 279 n n C27 H272 LI1 sing 280 n n C28 C29 LI1 sing 281 n n C28 C30 LI1 sing 282 n n C28 H28 LI1 sing 283 n n C29 H291 LI1 sing 284 n n C29 H292 LI1 sing 285 n n C29 H293 LI1 sing 286 n n C30 H301 LI1 sing 287 n n C30 H302 LI1 sing 288 n n C30 H303 LI1 sing 289 n n # _atom_sites.entry_id 1M0L _atom_sites.fract_transf_matrix[1][1] 0.01641 _atom_sites.fract_transf_matrix[1][2] 0.009474 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LI1 A 1 601 601 LI1 LI1 . C 2 LI1 A 1 602 602 LI1 LI1 . D 2 LI1 A 1 603 603 LI1 LI1 . E 2 LI1 A 1 604 604 LI1 LI1 . F 2 LI1 A 1 605 605 LI1 LI1 . G 2 LI1 A 1 606 606 LI1 LI1 . H 2 LI1 A 1 607 607 LI1 LI1 . I 2 LI1 A 1 608 608 LI1 LI1 . J 2 LI1 A 1 609 609 LI1 LI1 . K 2 LI1 A 1 610 610 LI1 LI1 . L 2 LI1 A 1 611 611 LI1 LI1 . M 2 LI1 A 1 612 612 LI1 LI1 . N 2 LI1 A 1 613 613 LI1 LI1 . O 3 SQU A 1 701 701 SQU SQU . P 4 RET A 1 301 301 RET RET . Q 5 HOH A 1 401 401 HOH HOH . Q 5 HOH A 2 402 402 HOH HOH . Q 5 HOH A 3 403 403 HOH HOH . Q 5 HOH A 4 404 404 HOH HOH . Q 5 HOH A 5 405 405 HOH HOH . Q 5 HOH A 6 406 406 HOH HOH . Q 5 HOH A 7 407 407 HOH HOH . Q 5 HOH A 8 411 411 HOH HOH . Q 5 HOH A 9 412 412 HOH HOH . Q 5 HOH A 10 413 413 HOH HOH . Q 5 HOH A 11 414 414 HOH HOH . Q 5 HOH A 12 415 415 HOH HOH . Q 5 HOH A 13 416 416 HOH HOH . Q 5 HOH A 14 417 417 HOH HOH . Q 5 HOH A 15 418 418 HOH HOH . Q 5 HOH A 16 419 419 HOH HOH . Q 5 HOH A 17 420 420 HOH HOH . Q 5 HOH A 18 501 501 HOH HOH . Q 5 HOH A 19 502 502 HOH HOH . Q 5 HOH A 20 511 511 HOH HOH . Q 5 HOH A 21 512 512 HOH HOH . Q 5 HOH A 22 513 513 HOH HOH . Q 5 HOH A 23 514 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LI1 . . . H 2 2.427 30.509 -10.993 1 76.52 ? C1 LI1 607 A 1 HETATM 2 C C2 LI1 . . . H 2 3.382 30.185 -9.836 1 72.9 ? C2 LI1 607 A 1 HETATM 3 C C3 LI1 . . . H 2 4.564 29.334 -10.304 1 66.1 ? C3 LI1 607 A 1 HETATM 4 O O1 LI1 . . . H 2 1.317 29.571 -10.939 1 67.63 ? O1 LI1 607 A 1 HETATM 5 O O2 LI1 . . . H 2 3.81 31.391 -9.163 1 75.24 ? O2 LI1 607 A 1 HETATM 6 O O3 LI1 . . . H 2 4.979 29.882 -11.684 1 72.92 ? O3 LI1 607 A 1 HETATM 7 C C41 LI1 . . . H 2 3.263 31.569 -7.834 1 74.13 ? C41 LI1 607 A 1 HETATM 8 C C42 LI1 . . . H 2 4.296 31.519 -6.702 1 64.88 ? C42 LI1 607 A 1 HETATM 9 C C43 LI1 . . . H 2 3.662 31.096 -5.362 1 64.53 ? C43 LI1 607 A 1 HETATM 10 C C44 LI1 . . . H 2 3.167 32.32 -4.571 1 52.68 ? C44 LI1 607 A 1 HETATM 11 C C45 LI1 . . . H 2 4.691 30.315 -4.53 1 62.69 ? C45 LI1 607 A 1 HETATM 12 C C46 LI1 . . . H 2 4.612 30.701 -3.038 1 47.22 ? C46 LI1 607 A 1 HETATM 13 C C47 LI1 . . . H 2 5.982 30.381 -2.413 1 44.26 ? C47 LI1 607 A 1 HETATM 14 C C48 LI1 . . . H 2 5.855 29.892 -0.966 1 51.53 ? C48 LI1 607 A 1 HETATM 15 C C50 LI1 . . . H 2 7.047 28.968 -0.653 1 58.35 ? C50 LI1 607 A 1 HETATM 16 C C51 LI1 . . . H 2 7.539 29.244 0.777 1 57.22 ? C51 LI1 607 A 1 HETATM 17 C C52 LI1 . . . H 2 8.168 27.957 1.35 1 62.22 ? C52 LI1 607 A 1 HETATM 18 C C53 LI1 . . . H 2 8.545 28.211 2.834 1 50.87 ? C53 LI1 607 A 1 HETATM 19 C C55 LI1 . . . H 2 7.247 28.287 3.643 1 41.19 ? C55 LI1 607 A 1 HETATM 20 C C56 LI1 . . . H 2 7.174 29.552 4.51 1 44.86 ? C56 LI1 607 A 1 HETATM 21 C C57 LI1 . . . H 2 6.978 29.105 5.968 1 41.48 ? C57 LI1 607 A 1 HETATM 22 C C58 LI1 . . . H 2 5.959 29.966 6.719 1 41.65 ? C58 LI1 607 A 1 HETATM 23 C C60 LI1 . . . H 2 6.245 29.83 8.24 1 33.99 ? C60 LI1 607 A 1 HETATM 24 C C11 LI1 . . . H 2 0.04 30.132 -11.333 1 60.56 ? C11 LI1 607 A 1 HETATM 25 C C12 LI1 . . . H 2 -1.034 29.983 -10.23 1 51.98 ? C12 LI1 607 A 1 HETATM 26 C C13 LI1 . . . H 2 -0.393 29.486 -8.922 1 54.21 ? C13 LI1 607 A 1 HETATM 27 C C15 LI1 . . . H 2 -1.443 29.581 -7.805 1 53.54 ? C15 LI1 607 A 1 HETATM 28 C C16 LI1 . . . H 2 -0.789 29.886 -6.447 1 49.01 ? C16 LI1 607 A 1 HETATM 29 C C17 LI1 . . . H 2 -1.811 30.556 -5.519 1 45.23 ? C17 LI1 607 A 1 HETATM 30 C C18 LI1 . . . H 2 -1.799 29.961 -4.1 1 40.79 ? C18 LI1 607 A 1 HETATM 31 C C20 LI1 . . . H 2 -2.393 31.008 -3.141 1 47.27 ? C20 LI1 607 A 1 HETATM 32 C C21 LI1 . . . H 2 -2.514 30.425 -1.727 1 45.61 ? C21 LI1 607 A 1 HETATM 33 C C22 LI1 . . . H 2 -2.251 31.462 -0.633 1 48.9 ? C22 LI1 607 A 1 HETATM 34 C C23 LI1 . . . H 2 -3.448 31.553 0.337 1 67.88 ? C23 LI1 607 A 1 HETATM 35 C C25 LI1 . . . H 2 -3.421 32.851 1.162 1 70.74 ? C25 LI1 607 A 1 HETATM 36 C C26 LI1 . . . H 2 -5.054 33.424 1.1 1 71.63 ? C26 LI1 607 A 1 HETATM 37 C C27 LI1 . . . H 2 -4.86 34.814 0.468 1 67.14 ? C27 LI1 607 A 1 HETATM 38 C C28 LI1 . . . H 2 -6.163 35.59 0.329 1 41.8 ? C28 LI1 607 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 38 #