data_1M1J
#
_model_server_result.job_id            mxhjp9SmAhSkSaWZEX01bA 
_model_server_result.datetime_utc      '2025-03-06 02:15:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1m1j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":520}' 
#
_entry.id    1M1J 
#
_exptl.entry_id    1M1J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.79 
_cell.angle_gamma         90 
_cell.entry_id            1M1J 
_cell.length_a            114.09 
_cell.length_b            100.02 
_cell.length_c            200.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1M1J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 M N N 
? 6 P N N 
? 6 R N N 
? 6 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 D SG CYS 28 D CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 E SG CYS 70 E CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 46 A CYS 46 1_555 C SG CYS 23 C CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 50 A CYS 50 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 A SG CYS 162 A CYS 162 1_555 C SG CYS 135 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 A SG CYS 166 A CYS 166 1_555 B SG CYS 198 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 B SG CYS 70 B CYS 70 1_555 D SG CYS 37 D CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 B SG CYS 85 B CYS 85 1_555 C SG CYS 19 C CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 B SG CYS 202 B CYS 202 1_555 C SG CYS 139 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf10 B SG CYS 206 B CYS 206 1_555 B SG CYS 290 B CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 B SG CYS 216 B CYS 216 1_555 B SG CYS 245 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 B SG CYS 398 B CYS 398 1_555 B SG CYS 411 B CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf13 C SG CYS 8 C CYS 8 1_555 F SG CYS 9 F CYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 C SG CYS 9 C CYS 9 1_555 F SG CYS 8 F CYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf15 C SG CYS 153 C CYS 153 1_555 C SG CYS 182 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 C SG CYS 326 C CYS 326 1_555 C SG CYS 339 C CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf17 D SG CYS 46 D CYS 46 1_555 F SG CYS 23 F CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf18 D SG CYS 50 D CYS 50 1_555 E SG CYS 81 E CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf19 D SG CYS 162 D CYS 162 1_555 F SG CYS 135 F CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 D SG CYS 166 D CYS 166 1_555 E SG CYS 198 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf21 E SG CYS 85 E CYS 85 1_555 F SG CYS 19 F CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf22 E SG CYS 202 E CYS 202 1_555 F SG CYS 139 F CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf23 E SG CYS 206 E CYS 206 1_555 E SG CYS 290 E CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf24 E SG CYS 216 E CYS 216 1_555 E SG CYS 245 E CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf25 E SG CYS 398 E CYS 398 1_555 E SG CYS 411 E CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf26 F SG CYS 153 F CYS 153 1_555 F SG CYS 182 F CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf27 F SG CYS 326 F CYS 326 1_555 F SG CYS 339 F CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 B OD1 ASP 385 B ASP 385 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc2 B OD2 ASP 385 B ASP 385 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? 
metalc ? metalc3 B OD1 ASP 387 B ASP 387 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc4 B O TRP 389 B TRP 389 1_555 L CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc5 C OD1 ASP 318 C ASP 318 1_555 O CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc6 C OD2 ASP 318 C ASP 318 1_555 O CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc7 C OD1 ASP 320 C ASP 320 1_555 O CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc8 C O PHE 322 C PHE 322 1_555 O CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc9 C O GLY 324 C GLY 324 1_555 O CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc10 E OD2 ASP 385 E ASP 385 1_555 Q CA CA . E CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc11 E OD1 ASP 385 E ASP 385 1_555 Q CA CA . E CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc12 E OD2 ASP 387 E ASP 387 1_555 Q CA CA . E CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.261 ? 
metalc ? metalc13 E OD1 ASP 387 E ASP 387 1_555 Q CA CA . E CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc14 E O TRP 389 E TRP 389 1_555 Q CA CA . E CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc15 F OD1 ASP 318 F ASP 318 1_555 T CA CA . F CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc16 F OD2 ASP 318 F ASP 318 1_555 T CA CA . F CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc17 F OD1 ASP 320 F ASP 320 1_555 T CA CA . F CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc18 F O PHE 322 F PHE 322 1_555 T CA CA . F CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc19 F O GLY 324 F GLY 324 1_555 T CA CA . F CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NDG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDG sing 265 n n 
C1 O5 NDG sing 266 n n 
C1 O1 NDG sing 267 n n 
C1 H1 NDG sing 268 n n 
C2 C3 NDG sing 269 n n 
C2 N2 NDG sing 270 n n 
C2 H2 NDG sing 271 n n 
C3 C4 NDG sing 272 n n 
C3 O3 NDG sing 273 n n 
C3 H3 NDG sing 274 n n 
C4 C5 NDG sing 275 n n 
C4 O4 NDG sing 276 n n 
C4 H4 NDG sing 277 n n 
C5 C6 NDG sing 278 n n 
C5 O5 NDG sing 279 n n 
C5 H5 NDG sing 280 n n 
C6 O6 NDG sing 281 n n 
C6 H61 NDG sing 282 n n 
C6 H62 NDG sing 283 n n 
C7 C8 NDG sing 284 n n 
C7 O7 NDG doub 285 n n 
C7 N2 NDG sing 286 n n 
C8 H81 NDG sing 287 n n 
C8 H82 NDG sing 288 n n 
C8 H83 NDG sing 289 n n 
O3 HO3 NDG sing 290 n n 
O4 HO4 NDG sing 291 n n 
O6 HO6 NDG sing 292 n n 
N2 HN2 NDG sing 293 n n 
O1 HO1 NDG sing 294 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 
NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1M1J 
_atom_sites.fract_transf_matrix[1][1]    0.008765 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002478 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005194 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 NDG B 1 470 470 NDG NAG . 
L 7 CA B 1 503 503 CA CA . 
M 6 NDG C 1 420 420 NDG NAG . 
N 8 NAG C 1 421 421 NAG NAG . 
O 7 CA C 1 501 501 CA CA . 
P 6 NDG E 1 570 570 NDG NAG . 
Q 7 CA E 1 504 504 CA CA . 
R 6 NDG F 1 520 520 NDG NAG . 
S 8 NAG F 1 521 521 NAG NAG . 
T 7 CA F 1 502 502 CA CA . 
U 8 NAG I 1 471 471 NAG NAG . 
V 6 NDG J 1 571 571 NDG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDG . . . R 6 -215.228 0.948 -92.527 1 182.58 ? C1 NDG 520 F 1 
HETATM 2 C C2 NDG . . . R 6 -215.287 2.367 -93.111 1 182.73 ? C2 NDG 520 F 1 
HETATM 3 C C3 NDG . . . R 6 -215.886 2.341 -94.524 1 183.68 ? C3 NDG 520 F 1 
HETATM 4 C C4 NDG . . . R 6 -215.16 1.314 -95.404 1 183.76 ? C4 NDG 520 F 1 
HETATM 5 C C5 NDG . . . R 6 -215.147 -0.049 -94.706 1 183.66 ? C5 NDG 520 F 1 
HETATM 6 C C6 NDG . . . R 6 -214.392 -1.112 -95.486 1 183.07 ? C6 NDG 520 F 1 
HETATM 7 C C7 NDG . . . R 6 -215.625 4.382 -91.826 1 180.58 ? C7 NDG 520 F 1 
HETATM 8 C C8 NDG . . . R 6 -214.839 4.383 -90.523 1 178.75 ? C8 NDG 520 F 1 
HETATM 9 O O5 NDG . . . R 6 -214.516 0.067 -93.412 1 184.14 ? O5 NDG 520 F 1 
HETATM 10 O O3 NDG . . . R 6 -215.782 3.63 -95.11 1 183.55 ? O3 NDG 520 F 1 
HETATM 11 O O4 NDG . . . R 6 -215.817 1.205 -96.659 1 181.19 ? O4 NDG 520 F 1 
HETATM 12 O O6 NDG . . . R 6 -213.181 -0.6 -96.023 1 182.05 ? O6 NDG 520 F 1 
HETATM 13 O O7 NDG . . . R 6 -215.807 5.438 -92.433 1 179.97 ? O7 NDG 520 F 1 
HETATM 14 N N2 NDG . . . R 6 -216.095 3.214 -92.252 1 181.69 ? N2 NDG 520 F 1 
HETATM 15 O O1 NDG . . . R 6 -216.511 0.452 -92.361 1 181.86 ? O1 NDG 520 F 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#