data_1M24 # _model_server_result.job_id sdt9c1mEfACm-BCclqvMyg _model_server_result.datetime_utc '2024-12-26 11:30:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":19}' # _entry.id 1M24 # _exptl.entry_id 1M24 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 95.77 _cell.angle_beta 98.07 _cell.angle_gamma 99.45 _cell.entry_id 1M24 _cell.length_a 9.49 _cell.length_b 16.85 _cell.length_c 31.68 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,C,E 2 1 B,D,F 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_665 x+1,y+1,z 1 0 0 0 1 0 0 0 1 6.723452 16.621333 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N AIB 2 A AIB 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C AIB 2 A AIB 1 1_555 A N GLY 3 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C GLY 3 A GLY 2 1_555 A N AIB 4 A AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale4 A C AIB 4 A AIB 3 1_555 A N LEU 5 A LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 A C LEU 5 A LEU 4 1_555 A N AIB 6 A AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 A C AIB 6 A AIB 5 1_555 A N GLN 7 A GLN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C GLN 7 A GLN 6 1_555 A N AIB 8 A AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C AIB 8 A AIB 7 1_555 A N AIB 9 A AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C AIB 9 A AIB 8 1_555 A N AIB 10 A AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C AIB 10 A AIB 9 1_555 A N ALA 11 A ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C ALA 12 A ALA 11 1_555 A N AIB 13 A AIB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C AIB 13 A AIB 12 1_555 A N PRO 14 A PRO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale13 A C LEU 15 A LEU 14 1_555 A N AIB 16 A AIB 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale14 A C AIB 16 A AIB 15 1_555 A N AIB 17 A AIB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 A C AIB 17 A AIB 16 1_555 A N GLN 18 A GLN 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale16 A C GLN 18 A GLN 17 1_555 A N VOL 19 A VOL 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale17 B C ACE 1 B ACE 0 1_555 B N AIB 2 B AIB 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? covale ? covale18 B C AIB 2 B AIB 1 1_555 B N GLY 3 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale19 B C GLY 3 B GLY 2 1_555 B N AIB 4 B AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale20 B C AIB 4 B AIB 3 1_555 B N LEU 5 B LEU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale21 B C LEU 5 B LEU 4 1_555 B N AIB 6 B AIB 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale22 B C AIB 6 B AIB 5 1_555 B N GLN 7 B GLN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale23 B C GLN 7 B GLN 6 1_555 B N AIB 8 B AIB 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 B C AIB 8 B AIB 7 1_555 B N AIB 9 B AIB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale25 B C AIB 9 B AIB 8 1_555 B N AIB 10 B AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale26 B C AIB 10 B AIB 9 1_555 B N ALA 11 B ALA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale27 B C ALA 12 B ALA 11 1_555 B N AIB 13 B AIB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale28 B C AIB 13 B AIB 12 1_555 B N PRO 14 B PRO 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 B C LEU 15 B LEU 14 1_555 B N AIB 16 B AIB 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale30 B C AIB 16 B AIB 15 1_555 B N AIB 17 B AIB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale31 B C AIB 17 B AIB 16 1_555 B N GLN 18 B GLN 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale32 B C GLN 18 B GLN 17 1_555 B N VOL 19 B VOL 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 34 n n C1 C2 CCN sing 35 n n C2 H21 CCN sing 36 n n C2 H22 CCN sing 37 n n C2 H23 CCN sing 38 n n # _atom_sites.entry_id 1M24 _atom_sites.fract_transf_matrix[1][1] 0.105374 _atom_sites.fract_transf_matrix[1][2] 0.017539 _atom_sites.fract_transf_matrix[1][3] 0.017299 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.060164 _atom_sites.fract_transf_matrix[2][3] 0.007675 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CCN A 1 19 19 CCN CCN . D 2 CCN B 1 19 19 CCN CCN . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . D 2 2.307 3.949 -0.604 1 31.89 ? N CCN 19 B 1 HETATM 2 C C1 CCN . . . D 2 1.403 4.712 -1.201 1 46.02 ? C1 CCN 19 B 1 HETATM 3 C C2 CCN . . . D 2 0.357 5.444 -0.468 1 28.84 ? C2 CCN 19 B 1 HETATM 4 H H21 CCN . . . D 2 -0.364 5.656 -1.065 1 43.26 ? H21 CCN 19 B 1 HETATM 5 H H22 CCN . . . D 2 0.725 6.254 -0.109 1 43.26 ? H22 CCN 19 B 1 HETATM 6 H H23 CCN . . . D 2 0.027 4.897 0.25 1 43.26 ? H23 CCN 19 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #