data_1M2Q # _model_server_result.job_id wcNiZN7HOr3x1DJPlgDZPA _model_server_result.datetime_utc '2024-10-13 07:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":351}' # _entry.id 1M2Q # _exptl.entry_id 1M2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.198 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,8-DI-HYDROXY-4-NITRO-XANTHEN-9-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.33 _cell.angle_gamma 90 _cell.entry_id 1M2Q _cell.length_a 143.04 _cell.length_b 51.73 _cell.length_c 44.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H7 N O6' _chem_comp.formula_weight 273.198 _chem_comp.id MNX _chem_comp.mon_nstd_flag . _chem_comp.name 1,8-DI-HYDROXY-4-NITRO-XANTHEN-9-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MNX doub 237 n y C1 C6 MNX sing 238 n y C1 O1 MNX sing 239 n n C2 C3 MNX sing 240 n y C2 C16 MNX sing 241 n y C3 C4 MNX doub 242 n y C3 O13 MNX sing 243 n y C4 C5 MNX sing 244 n y C4 HC4 MNX sing 245 n n C5 C6 MNX doub 246 n y C5 HC5 MNX sing 247 n n C6 HC6 MNX sing 248 n n O13 C14 MNX sing 249 n y C14 C15 MNX doub 250 n y C14 C25 MNX sing 251 n y C15 C16 MNX sing 252 n y C15 C22 MNX sing 253 n y C16 O16 MNX doub 254 n n C22 C23 MNX doub 255 n y C22 O22 MNX sing 256 n n C23 C24 MNX sing 257 n y C23 HC23 MNX sing 258 n n C24 C25 MNX doub 259 n y C24 HC24 MNX sing 260 n n C25 N25 MNX sing 261 n n O1 HO1 MNX sing 262 n n O22 HO22 MNX sing 263 n n N25 O2B MNX sing 264 n n N25 O2A MNX doub 265 n n # _atom_sites.entry_id 1M2Q _atom_sites.fract_transf_matrix[1][1] 0.006991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001149 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MNX A 1 351 1 MNX MNX . C 3 HOH A 1 352 1 HOH TIP . C 3 HOH A 2 353 2 HOH TIP . C 3 HOH A 3 354 3 HOH TIP . C 3 HOH A 4 355 4 HOH TIP . C 3 HOH A 5 356 5 HOH TIP . C 3 HOH A 6 357 6 HOH TIP . C 3 HOH A 7 358 7 HOH TIP . C 3 HOH A 8 359 8 HOH TIP . C 3 HOH A 9 360 9 HOH TIP . C 3 HOH A 10 361 10 HOH TIP . C 3 HOH A 11 362 11 HOH TIP . C 3 HOH A 12 363 12 HOH TIP . C 3 HOH A 13 364 13 HOH TIP . C 3 HOH A 14 365 14 HOH TIP . C 3 HOH A 15 366 15 HOH TIP . C 3 HOH A 16 367 16 HOH TIP . C 3 HOH A 17 368 17 HOH TIP . C 3 HOH A 18 369 18 HOH TIP . C 3 HOH A 19 370 19 HOH TIP . C 3 HOH A 20 371 20 HOH TIP . C 3 HOH A 21 372 21 HOH TIP . C 3 HOH A 22 373 22 HOH TIP . C 3 HOH A 23 374 23 HOH TIP . C 3 HOH A 24 375 24 HOH TIP . C 3 HOH A 25 376 25 HOH TIP . C 3 HOH A 26 377 26 HOH TIP . C 3 HOH A 27 378 27 HOH TIP . C 3 HOH A 28 379 28 HOH TIP . C 3 HOH A 29 380 29 HOH TIP . C 3 HOH A 30 381 30 HOH TIP . C 3 HOH A 31 382 31 HOH TIP . C 3 HOH A 32 383 32 HOH TIP . C 3 HOH A 33 384 33 HOH TIP . C 3 HOH A 34 385 34 HOH TIP . C 3 HOH A 35 386 36 HOH TIP . C 3 HOH A 36 387 37 HOH TIP . C 3 HOH A 37 388 38 HOH TIP . C 3 HOH A 38 389 39 HOH TIP . C 3 HOH A 39 390 40 HOH TIP . C 3 HOH A 40 391 41 HOH TIP . C 3 HOH A 41 392 42 HOH TIP . C 3 HOH A 42 393 43 HOH TIP . C 3 HOH A 43 394 44 HOH TIP . C 3 HOH A 44 395 45 HOH TIP . C 3 HOH A 45 396 46 HOH TIP . C 3 HOH A 46 397 47 HOH TIP . C 3 HOH A 47 398 48 HOH TIP . C 3 HOH A 48 399 49 HOH TIP . C 3 HOH A 49 400 50 HOH TIP . C 3 HOH A 50 401 51 HOH TIP . C 3 HOH A 51 402 52 HOH TIP . C 3 HOH A 52 403 53 HOH TIP . C 3 HOH A 53 404 54 HOH TIP . C 3 HOH A 54 405 55 HOH TIP . C 3 HOH A 55 406 56 HOH TIP . C 3 HOH A 56 407 57 HOH TIP . C 3 HOH A 57 408 58 HOH TIP . C 3 HOH A 58 409 59 HOH TIP . C 3 HOH A 59 410 60 HOH TIP . C 3 HOH A 60 411 61 HOH TIP . C 3 HOH A 61 412 62 HOH TIP . C 3 HOH A 62 413 63 HOH TIP . C 3 HOH A 63 414 64 HOH TIP . C 3 HOH A 64 415 65 HOH TIP . C 3 HOH A 65 416 66 HOH TIP . C 3 HOH A 66 417 67 HOH TIP . C 3 HOH A 67 418 68 HOH TIP . C 3 HOH A 68 419 69 HOH TIP . C 3 HOH A 69 420 70 HOH TIP . C 3 HOH A 70 421 71 HOH TIP . C 3 HOH A 71 422 72 HOH TIP . C 3 HOH A 72 423 73 HOH TIP . C 3 HOH A 73 424 74 HOH TIP . C 3 HOH A 74 425 75 HOH TIP . C 3 HOH A 75 426 76 HOH TIP . C 3 HOH A 76 427 77 HOH TIP . C 3 HOH A 77 428 78 HOH TIP . C 3 HOH A 78 429 79 HOH TIP . C 3 HOH A 79 430 80 HOH TIP . C 3 HOH A 80 431 81 HOH TIP . C 3 HOH A 81 432 82 HOH TIP . C 3 HOH A 82 433 83 HOH TIP . C 3 HOH A 83 434 84 HOH TIP . C 3 HOH A 84 435 85 HOH TIP . C 3 HOH A 85 436 86 HOH TIP . C 3 HOH A 86 437 87 HOH TIP . C 3 HOH A 87 438 88 HOH TIP . C 3 HOH A 88 439 89 HOH TIP . C 3 HOH A 89 440 90 HOH TIP . C 3 HOH A 90 441 91 HOH TIP . C 3 HOH A 91 442 92 HOH TIP . C 3 HOH A 92 443 93 HOH TIP . C 3 HOH A 93 444 94 HOH TIP . C 3 HOH A 94 445 95 HOH TIP . C 3 HOH A 95 446 96 HOH TIP . C 3 HOH A 96 447 97 HOH TIP . C 3 HOH A 97 448 98 HOH TIP . C 3 HOH A 98 449 99 HOH TIP . C 3 HOH A 99 450 100 HOH TIP . C 3 HOH A 100 451 101 HOH TIP . C 3 HOH A 101 452 102 HOH TIP . C 3 HOH A 102 453 103 HOH TIP . C 3 HOH A 103 454 104 HOH TIP . C 3 HOH A 104 455 105 HOH TIP . C 3 HOH A 105 456 106 HOH TIP . C 3 HOH A 106 457 107 HOH TIP . C 3 HOH A 107 458 108 HOH TIP . C 3 HOH A 108 459 109 HOH TIP . C 3 HOH A 109 460 110 HOH TIP . C 3 HOH A 110 461 111 HOH TIP . C 3 HOH A 111 462 112 HOH TIP . C 3 HOH A 112 463 113 HOH TIP . C 3 HOH A 113 464 114 HOH TIP . C 3 HOH A 114 465 115 HOH TIP . C 3 HOH A 115 466 116 HOH TIP . C 3 HOH A 116 467 117 HOH TIP . C 3 HOH A 117 468 118 HOH TIP . C 3 HOH A 118 469 119 HOH TIP . C 3 HOH A 119 470 120 HOH TIP . C 3 HOH A 120 471 121 HOH TIP . C 3 HOH A 121 472 122 HOH TIP . C 3 HOH A 122 473 123 HOH TIP . C 3 HOH A 123 474 124 HOH TIP . C 3 HOH A 124 475 125 HOH TIP . C 3 HOH A 125 476 126 HOH TIP . C 3 HOH A 126 477 127 HOH TIP . C 3 HOH A 127 478 128 HOH TIP . C 3 HOH A 128 479 129 HOH TIP . C 3 HOH A 129 480 130 HOH TIP . C 3 HOH A 130 481 131 HOH TIP . C 3 HOH A 131 482 132 HOH TIP . C 3 HOH A 132 483 133 HOH TIP . C 3 HOH A 133 484 134 HOH TIP . C 3 HOH A 134 485 135 HOH TIP . C 3 HOH A 135 486 136 HOH TIP . C 3 HOH A 136 487 137 HOH TIP . C 3 HOH A 137 488 138 HOH TIP . C 3 HOH A 138 489 139 HOH TIP . C 3 HOH A 139 490 140 HOH TIP . C 3 HOH A 140 491 141 HOH TIP . C 3 HOH A 141 492 142 HOH TIP . C 3 HOH A 142 493 143 HOH TIP . C 3 HOH A 143 494 144 HOH TIP . C 3 HOH A 144 495 145 HOH TIP . C 3 HOH A 145 496 146 HOH TIP . C 3 HOH A 146 497 147 HOH TIP . C 3 HOH A 147 498 148 HOH TIP . C 3 HOH A 148 499 149 HOH TIP . C 3 HOH A 149 500 150 HOH TIP . C 3 HOH A 150 501 151 HOH TIP . C 3 HOH A 151 502 152 HOH TIP . C 3 HOH A 152 503 153 HOH TIP . C 3 HOH A 153 504 154 HOH TIP . C 3 HOH A 154 505 155 HOH TIP . C 3 HOH A 155 506 156 HOH TIP . C 3 HOH A 156 507 157 HOH TIP . C 3 HOH A 157 508 158 HOH TIP . C 3 HOH A 158 509 159 HOH TIP . C 3 HOH A 159 510 160 HOH TIP . C 3 HOH A 160 511 161 HOH TIP . C 3 HOH A 161 512 162 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MNX . . . B 2 26.65 3.579 16.384 1 23.87 ? C1 MNX 351 A 1 HETATM 2 C C2 MNX . . . B 2 25.952 4.813 16.172 1 22.63 ? C2 MNX 351 A 1 HETATM 3 C C3 MNX . . . B 2 25.311 5.464 17.285 1 21.23 ? C3 MNX 351 A 1 HETATM 4 C C4 MNX . . . B 2 25.345 4.872 18.572 1 21.65 ? C4 MNX 351 A 1 HETATM 5 C C5 MNX . . . B 2 26.031 3.649 18.775 1 24.68 ? C5 MNX 351 A 1 HETATM 6 C C6 MNX . . . B 2 26.676 3 17.684 1 25.51 ? C6 MNX 351 A 1 HETATM 7 O O13 MNX . . . B 2 24.624 6.655 17.108 1 21.13 ? O13 MNX 351 A 1 HETATM 8 C C14 MNX . . . B 2 24.525 7.313 15.872 1 22 ? C14 MNX 351 A 1 HETATM 9 C C15 MNX . . . B 2 25.144 6.756 14.702 1 20.86 ? C15 MNX 351 A 1 HETATM 10 C C16 MNX . . . B 2 25.895 5.474 14.839 1 21.52 ? C16 MNX 351 A 1 HETATM 11 C C22 MNX . . . B 2 25.029 7.439 13.448 1 22.26 ? C22 MNX 351 A 1 HETATM 12 C C23 MNX . . . B 2 24.31 8.65 13.367 1 23.8 ? C23 MNX 351 A 1 HETATM 13 C C24 MNX . . . B 2 23.695 9.197 14.519 1 23.69 ? C24 MNX 351 A 1 HETATM 14 C C25 MNX . . . B 2 23.797 8.542 15.772 1 24.28 ? C25 MNX 351 A 1 HETATM 15 O O16 MNX . . . B 2 26.445 4.949 13.856 1 25.31 ? O16 MNX 351 A 1 HETATM 16 O O1 MNX . . . B 2 27.287 2.914 15.334 1 22.89 ? O1 MNX 351 A 1 HETATM 17 O O22 MNX . . . B 2 25.61 6.945 12.281 1 21.85 ? O22 MNX 351 A 1 HETATM 18 N N25 MNX . . . B 2 23.147 9.142 16.92 1 28.35 ? N25 MNX 351 A 1 HETATM 19 O O2B MNX . . . B 2 23.203 8.565 18.16 1 31.76 ? O2B MNX 351 A 1 HETATM 20 O O2A MNX . . . B 2 22.459 10.314 16.769 1 32.87 ? O2A MNX 351 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #