data_1M2Z # _model_server_result.job_id '_gACTwBGHdcFfCp18Ttcrg' _model_server_result.datetime_utc '2024-12-04 12:43:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m2z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":779}' # _entry.id 1M2Z # _exptl.entry_id 1M2Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1M2Z _cell.length_a 125.843 _cell.length_b 125.843 _cell.length_c 85.976 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M2Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1M2Z _atom_sites.fract_transf_matrix[1][1] 0.007946 _atom_sites.fract_transf_matrix[1][2] 0.004588 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BOG A 1 501 1 BOG DET . F 3 BOG A 1 778 1 BOG DET . G 3 BOG A 1 779 1 BOG DET . H 4 DEX A 1 301 1 DEX DEX . I 4 DEX D 1 401 1 DEX DEX . J 5 HOH A 1 2 2 HOH HOH . J 5 HOH A 2 4 4 HOH HOH . J 5 HOH A 3 6 6 HOH HOH . J 5 HOH A 4 10 10 HOH HOH . J 5 HOH A 5 11 11 HOH HOH . J 5 HOH A 6 12 12 HOH HOH . J 5 HOH A 7 14 14 HOH HOH . J 5 HOH A 8 15 15 HOH HOH . J 5 HOH A 9 16 16 HOH HOH . J 5 HOH A 10 19 19 HOH HOH . J 5 HOH A 11 20 20 HOH HOH . J 5 HOH A 12 21 21 HOH HOH . J 5 HOH A 13 23 23 HOH HOH . J 5 HOH A 14 24 24 HOH HOH . J 5 HOH A 15 27 27 HOH HOH . J 5 HOH A 16 29 29 HOH HOH . J 5 HOH A 17 33 33 HOH HOH . J 5 HOH A 18 34 34 HOH HOH . J 5 HOH A 19 36 36 HOH HOH . J 5 HOH A 20 39 39 HOH HOH . J 5 HOH A 21 40 40 HOH HOH . J 5 HOH A 22 42 42 HOH HOH . J 5 HOH A 23 45 45 HOH HOH . J 5 HOH A 24 46 46 HOH HOH . J 5 HOH A 25 47 47 HOH HOH . J 5 HOH A 26 48 48 HOH HOH . J 5 HOH A 27 49 49 HOH HOH . J 5 HOH A 28 52 52 HOH HOH . J 5 HOH A 29 53 53 HOH HOH . J 5 HOH A 30 54 54 HOH HOH . J 5 HOH A 31 56 56 HOH HOH . J 5 HOH A 32 58 58 HOH HOH . J 5 HOH A 33 59 59 HOH HOH . J 5 HOH A 34 61 61 HOH HOH . J 5 HOH A 35 66 66 HOH HOH . J 5 HOH A 36 68 68 HOH HOH . J 5 HOH A 37 69 69 HOH HOH . J 5 HOH A 38 70 70 HOH HOH . J 5 HOH A 39 71 71 HOH HOH . J 5 HOH A 40 75 75 HOH HOH . J 5 HOH A 41 77 77 HOH HOH . J 5 HOH A 42 78 78 HOH HOH . J 5 HOH A 43 80 80 HOH HOH . J 5 HOH A 44 82 82 HOH HOH . J 5 HOH A 45 85 85 HOH HOH . J 5 HOH A 46 86 86 HOH HOH . J 5 HOH A 47 90 90 HOH HOH . J 5 HOH A 48 92 92 HOH HOH . J 5 HOH A 49 98 98 HOH HOH . J 5 HOH A 50 100 100 HOH HOH . J 5 HOH A 51 101 101 HOH HOH . J 5 HOH A 52 102 102 HOH HOH . J 5 HOH A 53 105 105 HOH HOH . J 5 HOH A 54 106 106 HOH HOH . J 5 HOH A 55 108 108 HOH HOH . J 5 HOH A 56 110 110 HOH HOH . J 5 HOH A 57 111 111 HOH HOH . J 5 HOH A 58 115 115 HOH HOH . J 5 HOH A 59 119 119 HOH HOH . J 5 HOH A 60 122 122 HOH HOH . J 5 HOH A 61 123 123 HOH HOH . J 5 HOH A 62 125 125 HOH HOH . J 5 HOH A 63 127 127 HOH HOH . J 5 HOH A 64 128 128 HOH HOH . J 5 HOH A 65 130 130 HOH HOH . J 5 HOH A 66 131 131 HOH HOH . J 5 HOH A 67 136 136 HOH HOH . J 5 HOH A 68 138 138 HOH HOH . J 5 HOH A 69 139 139 HOH HOH . J 5 HOH A 70 140 140 HOH HOH . J 5 HOH A 71 141 141 HOH HOH . J 5 HOH A 72 142 142 HOH HOH . J 5 HOH A 73 143 143 HOH HOH . J 5 HOH A 74 147 147 HOH HOH . J 5 HOH A 75 150 150 HOH HOH . J 5 HOH A 76 151 151 HOH HOH . J 5 HOH A 77 153 153 HOH HOH . J 5 HOH A 78 154 154 HOH HOH . J 5 HOH A 79 156 156 HOH HOH . J 5 HOH A 80 158 158 HOH HOH . J 5 HOH A 81 159 159 HOH HOH . J 5 HOH A 82 161 161 HOH HOH . J 5 HOH A 83 163 163 HOH HOH . J 5 HOH A 84 164 164 HOH HOH . J 5 HOH A 85 167 167 HOH HOH . J 5 HOH A 86 168 168 HOH HOH . J 5 HOH A 87 170 170 HOH HOH . J 5 HOH A 88 172 172 HOH HOH . J 5 HOH A 89 173 173 HOH HOH . J 5 HOH A 90 174 174 HOH HOH . J 5 HOH A 91 177 177 HOH HOH . J 5 HOH A 92 179 179 HOH HOH . J 5 HOH A 93 181 181 HOH HOH . J 5 HOH A 94 183 183 HOH HOH . J 5 HOH A 95 185 185 HOH HOH . J 5 HOH A 96 186 186 HOH HOH . J 5 HOH A 97 188 188 HOH HOH . J 5 HOH A 98 189 189 HOH HOH . J 5 HOH A 99 190 190 HOH HOH . J 5 HOH A 100 192 192 HOH HOH . J 5 HOH A 101 194 194 HOH HOH . J 5 HOH A 102 199 199 HOH HOH . J 5 HOH A 103 200 200 HOH HOH . J 5 HOH A 104 201 201 HOH HOH . J 5 HOH A 105 202 202 HOH HOH . J 5 HOH A 106 203 203 HOH HOH . J 5 HOH A 107 204 204 HOH HOH . J 5 HOH A 108 205 205 HOH HOH . K 5 HOH B 1 44 44 HOH HOH . K 5 HOH B 2 96 96 HOH HOH . K 5 HOH B 3 134 134 HOH HOH . K 5 HOH B 4 135 135 HOH HOH . K 5 HOH B 5 146 146 HOH HOH . L 5 HOH D 1 1 1 HOH HOH . L 5 HOH D 2 3 3 HOH HOH . L 5 HOH D 3 5 5 HOH HOH . L 5 HOH D 4 7 7 HOH HOH . L 5 HOH D 5 8 8 HOH HOH . L 5 HOH D 6 9 9 HOH HOH . L 5 HOH D 7 13 13 HOH HOH . L 5 HOH D 8 17 17 HOH HOH . L 5 HOH D 9 18 18 HOH HOH . L 5 HOH D 10 22 22 HOH HOH . L 5 HOH D 11 25 25 HOH HOH . L 5 HOH D 12 26 26 HOH HOH . L 5 HOH D 13 28 28 HOH HOH . L 5 HOH D 14 30 30 HOH HOH . L 5 HOH D 15 31 31 HOH HOH . L 5 HOH D 16 32 32 HOH HOH . L 5 HOH D 17 35 35 HOH HOH . L 5 HOH D 18 37 37 HOH HOH . L 5 HOH D 19 38 38 HOH HOH . L 5 HOH D 20 41 41 HOH HOH . L 5 HOH D 21 43 43 HOH HOH . L 5 HOH D 22 50 50 HOH HOH . L 5 HOH D 23 51 51 HOH HOH . L 5 HOH D 24 55 55 HOH HOH . L 5 HOH D 25 57 57 HOH HOH . L 5 HOH D 26 60 60 HOH HOH . L 5 HOH D 27 62 62 HOH HOH . L 5 HOH D 28 63 63 HOH HOH . L 5 HOH D 29 64 64 HOH HOH . L 5 HOH D 30 65 65 HOH HOH . L 5 HOH D 31 67 67 HOH HOH . L 5 HOH D 32 72 72 HOH HOH . L 5 HOH D 33 73 73 HOH HOH . L 5 HOH D 34 74 74 HOH HOH . L 5 HOH D 35 76 76 HOH HOH . L 5 HOH D 36 79 79 HOH HOH . L 5 HOH D 37 81 81 HOH HOH . L 5 HOH D 38 83 83 HOH HOH . L 5 HOH D 39 84 84 HOH HOH . L 5 HOH D 40 87 87 HOH HOH . L 5 HOH D 41 88 88 HOH HOH . L 5 HOH D 42 89 89 HOH HOH . L 5 HOH D 43 91 91 HOH HOH . L 5 HOH D 44 93 93 HOH HOH . L 5 HOH D 45 94 94 HOH HOH . L 5 HOH D 46 97 97 HOH HOH . L 5 HOH D 47 103 103 HOH HOH . L 5 HOH D 48 107 107 HOH HOH . L 5 HOH D 49 109 109 HOH HOH . L 5 HOH D 50 112 112 HOH HOH . L 5 HOH D 51 113 113 HOH HOH . L 5 HOH D 52 114 114 HOH HOH . L 5 HOH D 53 116 116 HOH HOH . L 5 HOH D 54 117 117 HOH HOH . L 5 HOH D 55 118 118 HOH HOH . L 5 HOH D 56 120 120 HOH HOH . L 5 HOH D 57 124 124 HOH HOH . L 5 HOH D 58 126 126 HOH HOH . L 5 HOH D 59 129 129 HOH HOH . L 5 HOH D 60 132 132 HOH HOH . L 5 HOH D 61 133 133 HOH HOH . L 5 HOH D 62 137 137 HOH HOH . L 5 HOH D 63 144 144 HOH HOH . L 5 HOH D 64 145 145 HOH HOH . L 5 HOH D 65 148 148 HOH HOH . L 5 HOH D 66 149 149 HOH HOH . L 5 HOH D 67 152 152 HOH HOH . L 5 HOH D 68 155 155 HOH HOH . L 5 HOH D 69 157 157 HOH HOH . L 5 HOH D 70 160 160 HOH HOH . L 5 HOH D 71 162 162 HOH HOH . L 5 HOH D 72 165 165 HOH HOH . L 5 HOH D 73 166 166 HOH HOH . L 5 HOH D 74 169 169 HOH HOH . L 5 HOH D 75 171 171 HOH HOH . L 5 HOH D 76 175 175 HOH HOH . L 5 HOH D 77 176 176 HOH HOH . L 5 HOH D 78 178 178 HOH HOH . L 5 HOH D 79 180 180 HOH HOH . L 5 HOH D 80 182 182 HOH HOH . L 5 HOH D 81 184 184 HOH HOH . L 5 HOH D 82 187 187 HOH HOH . L 5 HOH D 83 191 191 HOH HOH . L 5 HOH D 84 193 193 HOH HOH . L 5 HOH D 85 195 195 HOH HOH . L 5 HOH D 86 197 197 HOH HOH . L 5 HOH D 87 198 198 HOH HOH . M 5 HOH E 1 95 95 HOH HOH . M 5 HOH E 2 99 99 HOH HOH . M 5 HOH E 3 104 104 HOH HOH . M 5 HOH E 4 121 121 HOH HOH . M 5 HOH E 5 196 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . G 3 63.828 14.518 6.486 1 86.76 ? C1 BOG 779 A 1 HETATM 2 O O1 BOG . . . G 3 63.994 13.406 5.639 1 81.8 ? O1 BOG 779 A 1 HETATM 3 C C2 BOG . . . G 3 64.894 15.63 6.445 1 88.4 ? C2 BOG 779 A 1 HETATM 4 O O2 BOG . . . G 3 65.968 15.579 5.543 1 90.3 ? O2 BOG 779 A 1 HETATM 5 C C3 BOG . . . G 3 64.715 16.809 7.404 1 89.19 ? C3 BOG 779 A 1 HETATM 6 O O3 BOG . . . G 3 65.756 17.721 7.641 1 90.93 ? O3 BOG 779 A 1 HETATM 7 C C4 BOG . . . G 3 63.365 16.941 8.107 1 88.38 ? C4 BOG 779 A 1 HETATM 8 O O4 BOG . . . G 3 63.071 18.033 8.94 1 89.55 ? O4 BOG 779 A 1 HETATM 9 C C5 BOG . . . G 3 62.329 15.837 7.839 1 87.53 ? C5 BOG 779 A 1 HETATM 10 O O5 BOG . . . G 3 62.73 14.539 7.401 1 87.02 ? O5 BOG 779 A 1 HETATM 11 C C6 BOG . . . G 3 60.851 16.145 8.077 1 86.75 ? C6 BOG 779 A 1 HETATM 12 O O6 BOG . . . G 3 60.608 17.528 8.014 1 82.82 ? O6 BOG 779 A 1 HETATM 13 C C1' BOG . . . G 3 62.717 13.025 5.122 1 79.95 ? C1' BOG 779 A 1 HETATM 14 C C2' BOG . . . G 3 62.512 11.529 5.365 1 76.23 ? C2' BOG 779 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #