data_1M4B
#
_model_server_result.job_id            KWo-zXsll4s61nFXhgP8tw 
_model_server_result.datetime_utc      '2024-12-02 20:52:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1m4b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    1M4B 
#
_exptl.entry_id    1M4B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              400.539 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[2-(2-CYCLOHEXYL-2-GUANIDINO-ACETYLAMINO)-ACETYLAMINO]-N-(3-MERCAPTO-PROPYL)-PROPIONAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.52 
_cell.angle_gamma         90 
_cell.entry_id            1M4B 
_cell.length_a            98.488 
_cell.length_b            35.102 
_cell.length_c            36.642 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1M4B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A SG CYS 43 A CYS 43 1_555 B S27 NMP . A NMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C17 H32 N6 O3 S' 
_chem_comp.formula_weight    400.539 
_chem_comp.id                NMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[2-(2-CYCLOHEXYL-2-GUANIDINO-ACETYLAMINO)-ACETYLAMINO]-N-(3-MERCAPTO-PROPYL)-PROPIONAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S27 C26 NMP sing 237 n n 
S27 H27 NMP sing 238 n n 
C26 C25 NMP sing 239 n n 
C26 H261 NMP sing 240 n n 
C26 H262 NMP sing 241 n n 
C25 C24 NMP sing 242 n n 
C25 H251 NMP sing 243 n n 
C25 H252 NMP sing 244 n n 
C24 N23 NMP sing 245 n n 
C24 H241 NMP sing 246 n n 
C24 H242 NMP sing 247 n n 
N23 C20 NMP sing 248 n n 
N23 H23 NMP sing 249 n n 
C20 O21 NMP doub 250 n n 
C20 C19 NMP sing 251 n n 
C19 C22 NMP sing 252 n n 
C19 N18 NMP sing 253 n n 
C19 H19 NMP sing 254 n n 
C22 H221 NMP sing 255 n n 
C22 H222 NMP sing 256 n n 
C22 H223 NMP sing 257 n n 
N18 C16 NMP sing 258 n n 
N18 H18 NMP sing 259 n n 
C16 O17 NMP doub 260 n n 
C16 C15 NMP sing 261 n n 
C15 N14 NMP sing 262 n n 
C15 H151 NMP sing 263 n n 
C15 H152 NMP sing 264 n n 
N14 C6 NMP sing 265 n n 
N14 H14 NMP sing 266 n n 
C6 O7 NMP doub 267 n n 
C6 C5 NMP sing 268 n n 
C5 N4 NMP sing 269 n n 
C5 C8 NMP sing 270 n n 
C5 H5 NMP sing 271 n n 
N4 C2 NMP sing 272 n n 
N4 H4 NMP sing 273 n n 
C2 N3 NMP sing 274 n n 
C2 N1 NMP doub 275 n n 
N3 H31 NMP sing 276 n n 
N3 H32 NMP sing 277 n n 
N1 H1 NMP sing 278 n n 
C8 C9 NMP sing 279 n n 
C8 C13 NMP sing 280 n n 
C8 H8 NMP sing 281 n n 
C9 C10 NMP sing 282 n n 
C9 H91 NMP sing 283 n n 
C9 H92 NMP sing 284 n n 
C10 C11 NMP sing 285 n n 
C10 H101 NMP sing 286 n n 
C10 H102 NMP sing 287 n n 
C11 C12 NMP sing 288 n n 
C11 H111 NMP sing 289 n n 
C11 H112 NMP sing 290 n n 
C12 C13 NMP sing 291 n n 
C12 H121 NMP sing 292 n n 
C12 H122 NMP sing 293 n n 
C13 H131 NMP sing 294 n n 
C13 H132 NMP sing 295 n n 
#
_atom_sites.entry_id                     1M4B 
_atom_sites.fract_transf_matrix[1][1]    0.010154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00134 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027527 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NMP A 1 201 101 NMP FRG . 
C 3 HOH A 1 202 1 HOH HOH . 
C 3 HOH A 2 203 2 HOH HOH . 
C 3 HOH A 3 204 3 HOH HOH . 
C 3 HOH A 4 205 4 HOH HOH . 
C 3 HOH A 5 206 5 HOH HOH . 
C 3 HOH A 6 207 6 HOH HOH . 
C 3 HOH A 7 208 7 HOH HOH . 
C 3 HOH A 8 209 8 HOH HOH . 
C 3 HOH A 9 210 9 HOH HOH . 
C 3 HOH A 10 211 10 HOH HOH . 
C 3 HOH A 11 212 11 HOH HOH . 
C 3 HOH A 12 213 12 HOH HOH . 
C 3 HOH A 13 214 13 HOH HOH . 
C 3 HOH A 14 215 14 HOH HOH . 
C 3 HOH A 15 216 15 HOH HOH . 
C 3 HOH A 16 217 16 HOH HOH . 
C 3 HOH A 17 218 17 HOH HOH . 
C 3 HOH A 18 219 18 HOH HOH . 
C 3 HOH A 19 220 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S27 NMP . . . B 2 23.582 -10.924 -1.682 1 36.53 ? S27 NMP 201 A 1 
HETATM 2 C C26 NMP . . . B 2 22.329 -9.781 -2.307 1 35.5 ? C26 NMP 201 A 1 
HETATM 3 C C25 NMP . . . B 2 20.917 -10.218 -1.945 1 34.65 ? C25 NMP 201 A 1 
HETATM 4 C C24 NMP . . . B 2 19.885 -9.416 -2.728 1 29.7 ? C24 NMP 201 A 1 
HETATM 5 N N23 NMP . . . B 2 19.481 -8.219 -2.018 1 30.58 ? N23 NMP 201 A 1 
HETATM 6 C C20 NMP . . . B 2 20.009 -7.03 -2.301 1 30.21 ? C20 NMP 201 A 1 
HETATM 7 O O21 NMP . . . B 2 20.805 -6.843 -3.206 1 31.09 ? O21 NMP 201 A 1 
HETATM 8 C C19 NMP . . . B 2 19.583 -5.887 -1.433 1 25.87 ? C19 NMP 201 A 1 
HETATM 9 C C22 NMP . . . B 2 18.513 -5.082 -2.156 1 25.22 ? C22 NMP 201 A 1 
HETATM 10 N N18 NMP . . . B 2 20.71 -5.037 -1.104 1 20.24 ? N18 NMP 201 A 1 
HETATM 11 C C16 NMP . . . B 2 21.776 -5.51 -0.464 1 20.04 ? C16 NMP 201 A 1 
HETATM 12 O O17 NMP . . . B 2 21.92 -6.686 -0.171 1 15.91 ? O17 NMP 201 A 1 
HETATM 13 C C15 NMP . . . B 2 22.84 -4.504 -0.101 1 19.99 ? C15 NMP 201 A 1 
HETATM 14 N N14 NMP . . . B 2 24.164 -5.01 -0.398 1 19.51 ? N14 NMP 201 A 1 
HETATM 15 C C6 NMP . . . B 2 24.824 -4.576 -1.466 1 21.37 ? C6 NMP 201 A 1 
HETATM 16 O O7 NMP . . . B 2 24.482 -3.593 -2.107 1 22.38 ? O7 NMP 201 A 1 
HETATM 17 C C5 NMP . . . B 2 26.028 -5.368 -1.864 1 19.52 ? C5 NMP 201 A 1 
HETATM 18 N N4 NMP . . . B 2 27.211 -4.538 -1.944 1 19.25 ? N4 NMP 201 A 1 
HETATM 19 C C2 NMP . . . B 2 27.989 -4.349 -0.882 1 19.92 ? C2 NMP 201 A 1 
HETATM 20 N N3 NMP . . . B 2 27.677 -4.905 0.289 1 16.63 ? N3 NMP 201 A 1 
HETATM 21 N N1 NMP . . . B 2 29.087 -3.609 -0.989 1 20.49 ? N1 NMP 201 A 1 
HETATM 22 C C8 NMP . . . B 2 25.765 -6.007 -3.217 1 23.07 ? C8 NMP 201 A 1 
HETATM 23 C C9 NMP . . . B 2 26.764 -7.121 -3.488 1 25.93 ? C9 NMP 201 A 1 
HETATM 24 C C10 NMP . . . B 2 26.55 -7.677 -4.887 1 26.26 ? C10 NMP 201 A 1 
HETATM 25 C C11 NMP . . . B 2 25.126 -8.197 -5.037 1 27.41 ? C11 NMP 201 A 1 
HETATM 26 C C12 NMP . . . B 2 24.093 -7.128 -4.695 1 27.18 ? C12 NMP 201 A 1 
HETATM 27 C C13 NMP . . . B 2 24.348 -6.555 -3.306 1 24.33 ? C13 NMP 201 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#