data_1M4B # _model_server_result.job_id wdmT5V6YslFoUWw0TWmzag _model_server_result.datetime_utc '2024-11-01 05:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 1M4B # _exptl.entry_id 1M4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.539 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-(2-CYCLOHEXYL-2-GUANIDINO-ACETYLAMINO)-ACETYLAMINO]-N-(3-MERCAPTO-PROPYL)-PROPIONAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.52 _cell.angle_gamma 90 _cell.entry_id 1M4B _cell.length_a 98.488 _cell.length_b 35.102 _cell.length_c 36.642 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A SG CYS 43 A CYS 43 1_555 B S27 NMP . A NMP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C17 H32 N6 O3 S' _chem_comp.formula_weight 400.539 _chem_comp.id NMP _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-(2-CYCLOHEXYL-2-GUANIDINO-ACETYLAMINO)-ACETYLAMINO]-N-(3-MERCAPTO-PROPYL)-PROPIONAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1M4B _atom_sites.fract_transf_matrix[1][1] 0.010154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00134 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NMP A 1 201 101 NMP FRG . C 3 HOH A 1 202 1 HOH HOH . C 3 HOH A 2 203 2 HOH HOH . C 3 HOH A 3 204 3 HOH HOH . C 3 HOH A 4 205 4 HOH HOH . C 3 HOH A 5 206 5 HOH HOH . C 3 HOH A 6 207 6 HOH HOH . C 3 HOH A 7 208 7 HOH HOH . C 3 HOH A 8 209 8 HOH HOH . C 3 HOH A 9 210 9 HOH HOH . C 3 HOH A 10 211 10 HOH HOH . C 3 HOH A 11 212 11 HOH HOH . C 3 HOH A 12 213 12 HOH HOH . C 3 HOH A 13 214 13 HOH HOH . C 3 HOH A 14 215 14 HOH HOH . C 3 HOH A 15 216 15 HOH HOH . C 3 HOH A 16 217 16 HOH HOH . C 3 HOH A 17 218 17 HOH HOH . C 3 HOH A 18 219 18 HOH HOH . C 3 HOH A 19 220 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S27 NMP . . . B 2 23.582 -10.924 -1.682 1 36.53 ? S27 NMP 201 A 1 HETATM 2 C C26 NMP . . . B 2 22.329 -9.781 -2.307 1 35.5 ? C26 NMP 201 A 1 HETATM 3 C C25 NMP . . . B 2 20.917 -10.218 -1.945 1 34.65 ? C25 NMP 201 A 1 HETATM 4 C C24 NMP . . . B 2 19.885 -9.416 -2.728 1 29.7 ? C24 NMP 201 A 1 HETATM 5 N N23 NMP . . . B 2 19.481 -8.219 -2.018 1 30.58 ? N23 NMP 201 A 1 HETATM 6 C C20 NMP . . . B 2 20.009 -7.03 -2.301 1 30.21 ? C20 NMP 201 A 1 HETATM 7 O O21 NMP . . . B 2 20.805 -6.843 -3.206 1 31.09 ? O21 NMP 201 A 1 HETATM 8 C C19 NMP . . . B 2 19.583 -5.887 -1.433 1 25.87 ? C19 NMP 201 A 1 HETATM 9 C C22 NMP . . . B 2 18.513 -5.082 -2.156 1 25.22 ? C22 NMP 201 A 1 HETATM 10 N N18 NMP . . . B 2 20.71 -5.037 -1.104 1 20.24 ? N18 NMP 201 A 1 HETATM 11 C C16 NMP . . . B 2 21.776 -5.51 -0.464 1 20.04 ? C16 NMP 201 A 1 HETATM 12 O O17 NMP . . . B 2 21.92 -6.686 -0.171 1 15.91 ? O17 NMP 201 A 1 HETATM 13 C C15 NMP . . . B 2 22.84 -4.504 -0.101 1 19.99 ? C15 NMP 201 A 1 HETATM 14 N N14 NMP . . . B 2 24.164 -5.01 -0.398 1 19.51 ? N14 NMP 201 A 1 HETATM 15 C C6 NMP . . . B 2 24.824 -4.576 -1.466 1 21.37 ? C6 NMP 201 A 1 HETATM 16 O O7 NMP . . . B 2 24.482 -3.593 -2.107 1 22.38 ? O7 NMP 201 A 1 HETATM 17 C C5 NMP . . . B 2 26.028 -5.368 -1.864 1 19.52 ? C5 NMP 201 A 1 HETATM 18 N N4 NMP . . . B 2 27.211 -4.538 -1.944 1 19.25 ? N4 NMP 201 A 1 HETATM 19 C C2 NMP . . . B 2 27.989 -4.349 -0.882 1 19.92 ? C2 NMP 201 A 1 HETATM 20 N N3 NMP . . . B 2 27.677 -4.905 0.289 1 16.63 ? N3 NMP 201 A 1 HETATM 21 N N1 NMP . . . B 2 29.087 -3.609 -0.989 1 20.49 ? N1 NMP 201 A 1 HETATM 22 C C8 NMP . . . B 2 25.765 -6.007 -3.217 1 23.07 ? C8 NMP 201 A 1 HETATM 23 C C9 NMP . . . B 2 26.764 -7.121 -3.488 1 25.93 ? C9 NMP 201 A 1 HETATM 24 C C10 NMP . . . B 2 26.55 -7.677 -4.887 1 26.26 ? C10 NMP 201 A 1 HETATM 25 C C11 NMP . . . B 2 25.126 -8.197 -5.037 1 27.41 ? C11 NMP 201 A 1 HETATM 26 C C12 NMP . . . B 2 24.093 -7.128 -4.695 1 27.18 ? C12 NMP 201 A 1 HETATM 27 C C13 NMP . . . B 2 24.348 -6.555 -3.306 1 24.33 ? C13 NMP 201 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #