data_1M6E # _model_server_result.job_id seMm9Hpp0UIk2Zlf6peWmA _model_server_result.datetime_utc '2024-11-05 04:13:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2814}' # _entry.id 1M6E # _exptl.entry_id 1M6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1M6E _cell.length_a 141.74 _cell.length_b 141.74 _cell.length_c 63.983 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 63.983 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1M6E _atom_sites.fract_transf_matrix[1][1] 0.007055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LU X 1 999 999 LU LU3 . C 3 SAH X 1 2814 2814 SAH SAH . D 4 SAL X 1 2000 2000 SAL SAL . E 5 HOH X 1 2815 1 HOH WAT . E 5 HOH X 2 2816 2 HOH WAT . E 5 HOH X 3 2817 3 HOH WAT . E 5 HOH X 4 2818 4 HOH WAT . E 5 HOH X 5 2819 5 HOH WAT . E 5 HOH X 6 2820 6 HOH WAT . E 5 HOH X 7 2821 7 HOH WAT . E 5 HOH X 8 2822 8 HOH WAT . E 5 HOH X 9 2823 9 HOH WAT . E 5 HOH X 10 2824 11 HOH WAT . E 5 HOH X 11 2825 12 HOH WAT . E 5 HOH X 12 2826 14 HOH WAT . E 5 HOH X 13 2827 15 HOH WAT . E 5 HOH X 14 2828 17 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 49.318 26.693 31.848 1 56.48 ? N SAH 2814 X 1 HETATM 2 C CA SAH . . . C 3 50.44 27.457 31.13 1 64.42 ? CA SAH 2814 X 1 HETATM 3 C CB SAH . . . C 3 51.316 28.312 32.066 1 56.91 ? CB SAH 2814 X 1 HETATM 4 C CG SAH . . . C 3 50.946 28.321 33.489 1 57.98 ? CG SAH 2814 X 1 HETATM 5 S SD SAH . . . C 3 51.973 29.283 34.654 1 45.74 ? SD SAH 2814 X 1 HETATM 6 C C SAH . . . C 3 51.449 26.557 30.418 1 73.38 ? C SAH 2814 X 1 HETATM 7 O O SAH . . . C 3 51.325 25.297 30.471 1 83.12 ? O SAH 2814 X 1 HETATM 8 O OXT SAH . . . C 3 52.386 27.213 29.797 1 65.2 ? OXT SAH 2814 X 1 HETATM 9 C C5' SAH . . . C 3 50.97 28.964 36.066 1 56.58 ? C5' SAH 2814 X 1 HETATM 10 C C4' SAH . . . C 3 49.743 29.94 36.349 1 42.83 ? C4' SAH 2814 X 1 HETATM 11 O O4' SAH . . . C 3 49.173 29.319 37.545 1 32.53 ? O4' SAH 2814 X 1 HETATM 12 C C3' SAH . . . C 3 50.181 31.359 36.875 1 43.28 ? C3' SAH 2814 X 1 HETATM 13 O O3' SAH . . . C 3 49.736 32.467 35.9 1 33.08 ? O3' SAH 2814 X 1 HETATM 14 C C2' SAH . . . C 3 49.467 31.541 38.139 1 31.51 ? C2' SAH 2814 X 1 HETATM 15 O O2' SAH . . . C 3 48.91 32.763 38.489 1 48.33 ? O2' SAH 2814 X 1 HETATM 16 C C1' SAH . . . C 3 48.519 30.246 38.156 1 28.19 ? C1' SAH 2814 X 1 HETATM 17 N N9 SAH . . . C 3 48.153 29.892 39.509 1 29.13 ? N9 SAH 2814 X 1 HETATM 18 C C8 SAH . . . C 3 48.925 29.687 40.632 1 31.37 ? C8 SAH 2814 X 1 HETATM 19 N N7 SAH . . . C 3 48.24 29.407 41.702 1 37.09 ? N7 SAH 2814 X 1 HETATM 20 C C5 SAH . . . C 3 46.943 29.428 41.246 1 35.25 ? C5 SAH 2814 X 1 HETATM 21 C C6 SAH . . . C 3 45.702 29.217 41.889 1 39.85 ? C6 SAH 2814 X 1 HETATM 22 N N6 SAH . . . C 3 45.653 28.94 43.192 1 52.26 ? N6 SAH 2814 X 1 HETATM 23 N N1 SAH . . . C 3 44.516 29.296 41.17 1 30.71 ? N1 SAH 2814 X 1 HETATM 24 C C2 SAH . . . C 3 44.588 29.587 39.831 1 35.78 ? C2 SAH 2814 X 1 HETATM 25 N N3 SAH . . . C 3 45.729 29.814 39.122 1 35.76 ? N3 SAH 2814 X 1 HETATM 26 C C4 SAH . . . C 3 46.875 29.719 39.895 1 31.84 ? C4 SAH 2814 X 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #