data_1M6P # _model_server_result.job_id L5iQA57MqD1JXcx4BH7vJw _model_server_result.datetime_utc '2024-12-01 21:10:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":199}' # _entry.id 1M6P # _exptl.entry_id 1M6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1M6P _cell.length_a 92.641 _cell.length_b 92.641 _cell.length_c 85.316 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 6 1_555 A SG CYS 50 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 104 A CYS 106 1_555 A SG CYS 139 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 117 A CYS 119 1_555 A SG CYS 151 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 4 B CYS 6 1_555 B SG CYS 50 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 104 B CYS 106 1_555 B SG CYS 139 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 B SG CYS 117 B CYS 119 1_555 B SG CYS 151 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 C MN MN . A MN 199 1_555 D O3P M6P . A M6P 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc2 E MN MN . B MN 199 1_555 F O3P M6P . B M6P 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1M6P _atom_sites.fract_transf_matrix[1][1] 0.010794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 199 199 MN MN . D 3 M6P A 1 200 200 M6P M6P . E 2 MN B 1 199 199 MN MN . F 3 M6P B 1 200 200 M6P M6P . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 505 505 HOH HOH . G 4 HOH A 5 507 507 HOH HOH . G 4 HOH A 6 509 509 HOH HOH . G 4 HOH A 7 511 511 HOH HOH . G 4 HOH A 8 512 512 HOH HOH . G 4 HOH A 9 515 515 HOH HOH . G 4 HOH A 10 516 516 HOH HOH . G 4 HOH A 11 518 518 HOH HOH . G 4 HOH A 12 520 520 HOH HOH . G 4 HOH A 13 522 522 HOH HOH . G 4 HOH A 14 524 524 HOH HOH . G 4 HOH A 15 526 526 HOH HOH . G 4 HOH A 16 530 530 HOH HOH . G 4 HOH A 17 531 531 HOH HOH . G 4 HOH A 18 533 533 HOH HOH . G 4 HOH A 19 534 534 HOH HOH . G 4 HOH A 20 536 536 HOH HOH . G 4 HOH A 21 537 537 HOH HOH . G 4 HOH A 22 539 539 HOH HOH . G 4 HOH A 23 540 540 HOH HOH . G 4 HOH A 24 541 541 HOH HOH . G 4 HOH A 25 545 545 HOH HOH . G 4 HOH A 26 547 547 HOH HOH . G 4 HOH A 27 549 549 HOH HOH . G 4 HOH A 28 552 552 HOH HOH . G 4 HOH A 29 555 555 HOH HOH . G 4 HOH A 30 557 557 HOH HOH . G 4 HOH A 31 561 561 HOH HOH . G 4 HOH A 32 562 562 HOH HOH . G 4 HOH A 33 564 564 HOH HOH . G 4 HOH A 34 565 565 HOH HOH . G 4 HOH A 35 573 573 HOH HOH . G 4 HOH A 36 574 574 HOH HOH . G 4 HOH A 37 577 577 HOH HOH . G 4 HOH A 38 579 579 HOH HOH . G 4 HOH A 39 580 580 HOH HOH . G 4 HOH A 40 581 581 HOH HOH . G 4 HOH A 41 583 583 HOH HOH . G 4 HOH A 42 585 585 HOH HOH . G 4 HOH A 43 586 586 HOH HOH . G 4 HOH A 44 587 587 HOH HOH . G 4 HOH A 45 588 588 HOH HOH . G 4 HOH A 46 589 589 HOH HOH . G 4 HOH A 47 593 593 HOH HOH . G 4 HOH A 48 595 595 HOH HOH . G 4 HOH A 49 596 596 HOH HOH . G 4 HOH A 50 597 597 HOH HOH . G 4 HOH A 51 598 598 HOH HOH . G 4 HOH A 52 599 599 HOH HOH . G 4 HOH A 53 603 603 HOH HOH . G 4 HOH A 54 604 604 HOH HOH . G 4 HOH A 55 606 606 HOH HOH . G 4 HOH A 56 609 609 HOH HOH . G 4 HOH A 57 610 610 HOH HOH . G 4 HOH A 58 613 613 HOH HOH . G 4 HOH A 59 614 614 HOH HOH . G 4 HOH A 60 618 618 HOH HOH . G 4 HOH A 61 621 621 HOH HOH . G 4 HOH A 62 623 623 HOH HOH . G 4 HOH A 63 626 626 HOH HOH . G 4 HOH A 64 627 627 HOH HOH . G 4 HOH A 65 628 628 HOH HOH . G 4 HOH A 66 629 629 HOH HOH . G 4 HOH A 67 632 632 HOH HOH . G 4 HOH A 68 636 636 HOH HOH . G 4 HOH A 69 637 637 HOH HOH . G 4 HOH A 70 641 641 HOH HOH . G 4 HOH A 71 642 642 HOH HOH . G 4 HOH A 72 644 644 HOH HOH . G 4 HOH A 73 645 645 HOH HOH . H 4 HOH B 1 504 504 HOH HOH . H 4 HOH B 2 506 506 HOH HOH . H 4 HOH B 3 508 508 HOH HOH . H 4 HOH B 4 510 510 HOH HOH . H 4 HOH B 5 513 513 HOH HOH . H 4 HOH B 6 514 514 HOH HOH . H 4 HOH B 7 517 517 HOH HOH . H 4 HOH B 8 519 519 HOH HOH . H 4 HOH B 9 521 521 HOH HOH . H 4 HOH B 10 523 523 HOH HOH . H 4 HOH B 11 525 525 HOH HOH . H 4 HOH B 12 527 527 HOH HOH . H 4 HOH B 13 528 528 HOH HOH . H 4 HOH B 14 529 529 HOH HOH . H 4 HOH B 15 532 532 HOH HOH . H 4 HOH B 16 535 535 HOH HOH . H 4 HOH B 17 538 538 HOH HOH . H 4 HOH B 18 542 542 HOH HOH . H 4 HOH B 19 543 543 HOH HOH . H 4 HOH B 20 544 544 HOH HOH . H 4 HOH B 21 546 546 HOH HOH . H 4 HOH B 22 548 548 HOH HOH . H 4 HOH B 23 550 550 HOH HOH . H 4 HOH B 24 551 551 HOH HOH . H 4 HOH B 25 553 553 HOH HOH . H 4 HOH B 26 554 554 HOH HOH . H 4 HOH B 27 556 556 HOH HOH . H 4 HOH B 28 558 558 HOH HOH . H 4 HOH B 29 559 559 HOH HOH . H 4 HOH B 30 560 560 HOH HOH . H 4 HOH B 31 563 563 HOH HOH . H 4 HOH B 32 566 566 HOH HOH . H 4 HOH B 33 567 567 HOH HOH . H 4 HOH B 34 568 568 HOH HOH . H 4 HOH B 35 569 569 HOH HOH . H 4 HOH B 36 570 570 HOH HOH . H 4 HOH B 37 571 571 HOH HOH . H 4 HOH B 38 572 572 HOH HOH . H 4 HOH B 39 575 575 HOH HOH . H 4 HOH B 40 576 576 HOH HOH . H 4 HOH B 41 578 578 HOH HOH . H 4 HOH B 42 582 582 HOH HOH . H 4 HOH B 43 584 584 HOH HOH . H 4 HOH B 44 590 590 HOH HOH . H 4 HOH B 45 591 591 HOH HOH . H 4 HOH B 46 592 592 HOH HOH . H 4 HOH B 47 594 594 HOH HOH . H 4 HOH B 48 600 600 HOH HOH . H 4 HOH B 49 601 601 HOH HOH . H 4 HOH B 50 602 602 HOH HOH . H 4 HOH B 51 605 605 HOH HOH . H 4 HOH B 52 607 607 HOH HOH . H 4 HOH B 53 608 608 HOH HOH . H 4 HOH B 54 611 611 HOH HOH . H 4 HOH B 55 612 612 HOH HOH . H 4 HOH B 56 615 615 HOH HOH . H 4 HOH B 57 616 616 HOH HOH . H 4 HOH B 58 617 617 HOH HOH . H 4 HOH B 59 619 619 HOH HOH . H 4 HOH B 60 620 620 HOH HOH . H 4 HOH B 61 622 622 HOH HOH . H 4 HOH B 62 624 624 HOH HOH . H 4 HOH B 63 625 625 HOH HOH . H 4 HOH B 64 630 630 HOH HOH . H 4 HOH B 65 631 631 HOH HOH . H 4 HOH B 66 633 633 HOH HOH . H 4 HOH B 67 634 634 HOH HOH . H 4 HOH B 68 635 635 HOH HOH . H 4 HOH B 69 638 638 HOH HOH . H 4 HOH B 70 639 639 HOH HOH . H 4 HOH B 71 640 640 HOH HOH . H 4 HOH B 72 643 643 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.785 _atom_site.Cartn_y 20.804 _atom_site.Cartn_z 37.428 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 199 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #