data_1M6P
#
_model_server_result.job_id            K_ahfrbulTAx7UPUp1YYwg 
_model_server_result.datetime_utc      '2024-12-01 21:03:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1m6p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":200}' 
#
_entry.id    1M6P 
#
_exptl.entry_id    1M6P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              260.136 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-O-phosphono-alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1M6P 
_cell.length_a            92.641 
_cell.length_b            92.641 
_cell.length_c            85.316 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1M6P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 6 1_555 A SG CYS 50 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 A SG CYS 104 A CYS 106 1_555 A SG CYS 139 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 117 A CYS 119 1_555 A SG CYS 151 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 4 B CYS 6 1_555 B SG CYS 50 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 104 B CYS 106 1_555 B SG CYS 139 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf6 B SG CYS 117 B CYS 119 1_555 B SG CYS 151 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc1 C MN MN . A MN 199 1_555 D O3P M6P . A M6P 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc2 E MN MN . B MN 199 1_555 F O3P M6P . B M6P 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
#
_chem_comp.formula           'C6 H13 O9 P' 
_chem_comp.formula_weight    260.136 
_chem_comp.id                M6P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              6-O-phosphono-alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     ALPHA-D-MANNOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-mannose;6-O-phosphono-D-mannose;6-O-phosphono-mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 M6P sing 218 n n 
C1 O1 M6P sing 219 n n 
C1 O5 M6P sing 220 n n 
C1 H1 M6P sing 221 n n 
C2 C3 M6P sing 222 n n 
C2 O2 M6P sing 223 n n 
C2 H2 M6P sing 224 n n 
C3 C4 M6P sing 225 n n 
C3 O3 M6P sing 226 n n 
C3 H3 M6P sing 227 n n 
C4 C5 M6P sing 228 n n 
C4 O4 M6P sing 229 n n 
C4 H4 M6P sing 230 n n 
C5 C6 M6P sing 231 n n 
C5 O5 M6P sing 232 n n 
C5 H5 M6P sing 233 n n 
C6 O6 M6P sing 234 n n 
C6 H61 M6P sing 235 n n 
C6 H62 M6P sing 236 n n 
O1 HO1 M6P sing 237 n n 
O2 HO2 M6P sing 238 n n 
O3 HO3 M6P sing 239 n n 
O4 HO4 M6P sing 240 n n 
O6 P M6P sing 241 n n 
P O1P M6P doub 242 n n 
P O2P M6P sing 243 n n 
P O3P M6P sing 244 n n 
O2P HOP2 M6P sing 245 n n 
O3P HOP3 M6P sing 246 n n 
#
_pdbx_chem_comp_identifier.comp_id            M6P 
_pdbx_chem_comp_identifier.identifier         a-D-Manp6PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1M6P 
_atom_sites.fract_transf_matrix[1][1]    0.010794 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010794 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011721 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 199 199 MN MN . 
D 3 M6P A 1 200 200 M6P M6P . 
E 2 MN B 1 199 199 MN MN . 
F 3 M6P B 1 200 200 M6P M6P . 
G 4 HOH A 1 501 501 HOH HOH . 
G 4 HOH A 2 502 502 HOH HOH . 
G 4 HOH A 3 503 503 HOH HOH . 
G 4 HOH A 4 505 505 HOH HOH . 
G 4 HOH A 5 507 507 HOH HOH . 
G 4 HOH A 6 509 509 HOH HOH . 
G 4 HOH A 7 511 511 HOH HOH . 
G 4 HOH A 8 512 512 HOH HOH . 
G 4 HOH A 9 515 515 HOH HOH . 
G 4 HOH A 10 516 516 HOH HOH . 
G 4 HOH A 11 518 518 HOH HOH . 
G 4 HOH A 12 520 520 HOH HOH . 
G 4 HOH A 13 522 522 HOH HOH . 
G 4 HOH A 14 524 524 HOH HOH . 
G 4 HOH A 15 526 526 HOH HOH . 
G 4 HOH A 16 530 530 HOH HOH . 
G 4 HOH A 17 531 531 HOH HOH . 
G 4 HOH A 18 533 533 HOH HOH . 
G 4 HOH A 19 534 534 HOH HOH . 
G 4 HOH A 20 536 536 HOH HOH . 
G 4 HOH A 21 537 537 HOH HOH . 
G 4 HOH A 22 539 539 HOH HOH . 
G 4 HOH A 23 540 540 HOH HOH . 
G 4 HOH A 24 541 541 HOH HOH . 
G 4 HOH A 25 545 545 HOH HOH . 
G 4 HOH A 26 547 547 HOH HOH . 
G 4 HOH A 27 549 549 HOH HOH . 
G 4 HOH A 28 552 552 HOH HOH . 
G 4 HOH A 29 555 555 HOH HOH . 
G 4 HOH A 30 557 557 HOH HOH . 
G 4 HOH A 31 561 561 HOH HOH . 
G 4 HOH A 32 562 562 HOH HOH . 
G 4 HOH A 33 564 564 HOH HOH . 
G 4 HOH A 34 565 565 HOH HOH . 
G 4 HOH A 35 573 573 HOH HOH . 
G 4 HOH A 36 574 574 HOH HOH . 
G 4 HOH A 37 577 577 HOH HOH . 
G 4 HOH A 38 579 579 HOH HOH . 
G 4 HOH A 39 580 580 HOH HOH . 
G 4 HOH A 40 581 581 HOH HOH . 
G 4 HOH A 41 583 583 HOH HOH . 
G 4 HOH A 42 585 585 HOH HOH . 
G 4 HOH A 43 586 586 HOH HOH . 
G 4 HOH A 44 587 587 HOH HOH . 
G 4 HOH A 45 588 588 HOH HOH . 
G 4 HOH A 46 589 589 HOH HOH . 
G 4 HOH A 47 593 593 HOH HOH . 
G 4 HOH A 48 595 595 HOH HOH . 
G 4 HOH A 49 596 596 HOH HOH . 
G 4 HOH A 50 597 597 HOH HOH . 
G 4 HOH A 51 598 598 HOH HOH . 
G 4 HOH A 52 599 599 HOH HOH . 
G 4 HOH A 53 603 603 HOH HOH . 
G 4 HOH A 54 604 604 HOH HOH . 
G 4 HOH A 55 606 606 HOH HOH . 
G 4 HOH A 56 609 609 HOH HOH . 
G 4 HOH A 57 610 610 HOH HOH . 
G 4 HOH A 58 613 613 HOH HOH . 
G 4 HOH A 59 614 614 HOH HOH . 
G 4 HOH A 60 618 618 HOH HOH . 
G 4 HOH A 61 621 621 HOH HOH . 
G 4 HOH A 62 623 623 HOH HOH . 
G 4 HOH A 63 626 626 HOH HOH . 
G 4 HOH A 64 627 627 HOH HOH . 
G 4 HOH A 65 628 628 HOH HOH . 
G 4 HOH A 66 629 629 HOH HOH . 
G 4 HOH A 67 632 632 HOH HOH . 
G 4 HOH A 68 636 636 HOH HOH . 
G 4 HOH A 69 637 637 HOH HOH . 
G 4 HOH A 70 641 641 HOH HOH . 
G 4 HOH A 71 642 642 HOH HOH . 
G 4 HOH A 72 644 644 HOH HOH . 
G 4 HOH A 73 645 645 HOH HOH . 
H 4 HOH B 1 504 504 HOH HOH . 
H 4 HOH B 2 506 506 HOH HOH . 
H 4 HOH B 3 508 508 HOH HOH . 
H 4 HOH B 4 510 510 HOH HOH . 
H 4 HOH B 5 513 513 HOH HOH . 
H 4 HOH B 6 514 514 HOH HOH . 
H 4 HOH B 7 517 517 HOH HOH . 
H 4 HOH B 8 519 519 HOH HOH . 
H 4 HOH B 9 521 521 HOH HOH . 
H 4 HOH B 10 523 523 HOH HOH . 
H 4 HOH B 11 525 525 HOH HOH . 
H 4 HOH B 12 527 527 HOH HOH . 
H 4 HOH B 13 528 528 HOH HOH . 
H 4 HOH B 14 529 529 HOH HOH . 
H 4 HOH B 15 532 532 HOH HOH . 
H 4 HOH B 16 535 535 HOH HOH . 
H 4 HOH B 17 538 538 HOH HOH . 
H 4 HOH B 18 542 542 HOH HOH . 
H 4 HOH B 19 543 543 HOH HOH . 
H 4 HOH B 20 544 544 HOH HOH . 
H 4 HOH B 21 546 546 HOH HOH . 
H 4 HOH B 22 548 548 HOH HOH . 
H 4 HOH B 23 550 550 HOH HOH . 
H 4 HOH B 24 551 551 HOH HOH . 
H 4 HOH B 25 553 553 HOH HOH . 
H 4 HOH B 26 554 554 HOH HOH . 
H 4 HOH B 27 556 556 HOH HOH . 
H 4 HOH B 28 558 558 HOH HOH . 
H 4 HOH B 29 559 559 HOH HOH . 
H 4 HOH B 30 560 560 HOH HOH . 
H 4 HOH B 31 563 563 HOH HOH . 
H 4 HOH B 32 566 566 HOH HOH . 
H 4 HOH B 33 567 567 HOH HOH . 
H 4 HOH B 34 568 568 HOH HOH . 
H 4 HOH B 35 569 569 HOH HOH . 
H 4 HOH B 36 570 570 HOH HOH . 
H 4 HOH B 37 571 571 HOH HOH . 
H 4 HOH B 38 572 572 HOH HOH . 
H 4 HOH B 39 575 575 HOH HOH . 
H 4 HOH B 40 576 576 HOH HOH . 
H 4 HOH B 41 578 578 HOH HOH . 
H 4 HOH B 42 582 582 HOH HOH . 
H 4 HOH B 43 584 584 HOH HOH . 
H 4 HOH B 44 590 590 HOH HOH . 
H 4 HOH B 45 591 591 HOH HOH . 
H 4 HOH B 46 592 592 HOH HOH . 
H 4 HOH B 47 594 594 HOH HOH . 
H 4 HOH B 48 600 600 HOH HOH . 
H 4 HOH B 49 601 601 HOH HOH . 
H 4 HOH B 50 602 602 HOH HOH . 
H 4 HOH B 51 605 605 HOH HOH . 
H 4 HOH B 52 607 607 HOH HOH . 
H 4 HOH B 53 608 608 HOH HOH . 
H 4 HOH B 54 611 611 HOH HOH . 
H 4 HOH B 55 612 612 HOH HOH . 
H 4 HOH B 56 615 615 HOH HOH . 
H 4 HOH B 57 616 616 HOH HOH . 
H 4 HOH B 58 617 617 HOH HOH . 
H 4 HOH B 59 619 619 HOH HOH . 
H 4 HOH B 60 620 620 HOH HOH . 
H 4 HOH B 61 622 622 HOH HOH . 
H 4 HOH B 62 624 624 HOH HOH . 
H 4 HOH B 63 625 625 HOH HOH . 
H 4 HOH B 64 630 630 HOH HOH . 
H 4 HOH B 65 631 631 HOH HOH . 
H 4 HOH B 66 633 633 HOH HOH . 
H 4 HOH B 67 634 634 HOH HOH . 
H 4 HOH B 68 635 635 HOH HOH . 
H 4 HOH B 69 638 638 HOH HOH . 
H 4 HOH B 70 639 639 HOH HOH . 
H 4 HOH B 71 640 640 HOH HOH . 
H 4 HOH B 72 643 643 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 M6P . . . D 3 43.837 40.282 18.226 1 19.37 ? C1 M6P 200 A 1 
HETATM 2 C C2 M6P . . . D 3 43.257 38.853 18.09 1 16.64 ? C2 M6P 200 A 1 
HETATM 3 C C3 M6P . . . D 3 41.873 38.868 17.391 1 15.97 ? C3 M6P 200 A 1 
HETATM 4 C C4 M6P . . . D 3 40.907 39.759 18.135 1 16.56 ? C4 M6P 200 A 1 
HETATM 5 C C5 M6P . . . D 3 41.545 41.175 18.125 1 19.21 ? C5 M6P 200 A 1 
HETATM 6 C C6 M6P . . . D 3 40.965 42.06 19.521 1 19.65 ? C6 M6P 200 A 1 
HETATM 7 O O1 M6P . . . D 3 44.322 40.784 16.975 1 28.27 ? O1 M6P 200 A 1 
HETATM 8 O O2 M6P . . . D 3 43.112 38.27 19.378 1 13.77 ? O2 M6P 200 A 1 
HETATM 9 O O3 M6P . . . D 3 41.359 37.547 17.323 1 12.52 ? O3 M6P 200 A 1 
HETATM 10 O O4 M6P . . . D 3 39.642 39.726 17.506 1 16.17 ? O4 M6P 200 A 1 
HETATM 11 O O5 M6P . . . D 3 42.843 41.146 18.797 1 18.35 ? O5 M6P 200 A 1 
HETATM 12 O O6 M6P . . . D 3 39.901 42.699 20.161 1 22.82 ? O6 M6P 200 A 1 
HETATM 13 P P M6P . . . D 3 40.17 43.917 20.998 1 18.53 ? P M6P 200 A 1 
HETATM 14 O O1P M6P . . . D 3 40.879 44.847 20.176 1 20.83 ? O1P M6P 200 A 1 
HETATM 15 O O2P M6P . . . D 3 38.883 44.285 21.51 1 23.05 ? O2P M6P 200 A 1 
HETATM 16 O O3P M6P . . . D 3 41.113 43.474 22.208 1 19.85 ? O3P M6P 200 A 1 
#
_model_server_stats.io_time_ms              106 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#