data_1M7B # _model_server_result.job_id mhq6QV_nYJLZKWNyDEaSOg _model_server_result.datetime_utc '2025-04-22 23:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":538}' # _entry.id 1M7B # _exptl.entry_id 1M7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1M7B _cell.length_a 63.592 _cell.length_b 69.932 _cell.length_c 97.715 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 21 A THR 37 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A OG1 THR 39 A THR 55 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 C O2B GTP . A GTP 538 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc4 C O2G GTP . A GTP 538 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 B MG MG . A MG 550 1_555 D O HOH . A HOH 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc6 B MG MG . A MG 550 1_555 D O HOH . A HOH 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1M7B _atom_sites.fract_transf_matrix[1][1] 0.015725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 550 550 MG MG . C 3 GTP A 1 538 538 GTP GTP . D 4 HOH A 1 1000 1000 HOH HOH . D 4 HOH A 2 1001 1001 HOH HOH . D 4 HOH A 3 1002 1002 HOH HOH . D 4 HOH A 4 1003 1003 HOH HOH . D 4 HOH A 5 1004 1004 HOH HOH . D 4 HOH A 6 1005 1005 HOH HOH . D 4 HOH A 7 1006 1006 HOH HOH . D 4 HOH A 8 1007 1007 HOH HOH . D 4 HOH A 9 1008 1008 HOH HOH . D 4 HOH A 10 1009 1009 HOH HOH . D 4 HOH A 11 1010 1010 HOH HOH . D 4 HOH A 12 1011 1011 HOH HOH . D 4 HOH A 13 1012 1012 HOH HOH . D 4 HOH A 14 1013 1013 HOH HOH . D 4 HOH A 15 1014 1014 HOH HOH . D 4 HOH A 16 1015 1015 HOH HOH . D 4 HOH A 17 1016 1016 HOH HOH . D 4 HOH A 18 1017 1017 HOH HOH . D 4 HOH A 19 1018 1018 HOH HOH . D 4 HOH A 20 1019 1019 HOH HOH . D 4 HOH A 21 1020 1020 HOH HOH . D 4 HOH A 22 1021 1021 HOH HOH . D 4 HOH A 23 1022 1022 HOH HOH . D 4 HOH A 24 1023 1023 HOH HOH . D 4 HOH A 25 1024 1024 HOH HOH . D 4 HOH A 26 1025 1025 HOH HOH . D 4 HOH A 27 1026 1026 HOH HOH . D 4 HOH A 28 1027 1027 HOH HOH . D 4 HOH A 29 1028 1028 HOH HOH . D 4 HOH A 30 1029 1029 HOH HOH . D 4 HOH A 31 1030 1030 HOH HOH . D 4 HOH A 32 1031 1031 HOH HOH . D 4 HOH A 33 1032 1032 HOH HOH . D 4 HOH A 34 1033 1033 HOH HOH . D 4 HOH A 35 1034 1034 HOH HOH . D 4 HOH A 36 1035 1035 HOH HOH . D 4 HOH A 37 1036 1036 HOH HOH . D 4 HOH A 38 1037 1037 HOH HOH . D 4 HOH A 39 1038 1038 HOH HOH . D 4 HOH A 40 1039 1039 HOH HOH . D 4 HOH A 41 1040 1040 HOH HOH . D 4 HOH A 42 1041 1041 HOH HOH . D 4 HOH A 43 1042 1042 HOH HOH . D 4 HOH A 44 1043 1043 HOH HOH . D 4 HOH A 45 1044 1044 HOH HOH . D 4 HOH A 46 1045 1045 HOH HOH . D 4 HOH A 47 1046 1046 HOH HOH . D 4 HOH A 48 1047 1047 HOH HOH . D 4 HOH A 49 1048 1048 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 25.843 31.397 9.612 1 31.42 ? PG GTP 538 A 1 HETATM 2 O O1G GTP . . . C 3 26.903 32.455 9.755 1 30.55 ? O1G GTP 538 A 1 HETATM 3 O O2G GTP . . . C 3 25.617 30.934 8.206 1 28.37 ? O2G GTP 538 A 1 HETATM 4 O O3G GTP . . . C 3 24.623 31.862 10.266 1 25.12 ? O3G GTP 538 A 1 HETATM 5 O O3B GTP . . . C 3 26.512 30.053 10.572 1 29.45 ? O3B GTP 538 A 1 HETATM 6 P PB GTP . . . C 3 25.935 28.524 10.888 1 23.92 ? PB GTP 538 A 1 HETATM 7 O O1B GTP . . . C 3 24.988 28.593 12.081 1 22.24 ? O1B GTP 538 A 1 HETATM 8 O O2B GTP . . . C 3 25.333 27.978 9.695 1 23.93 ? O2B GTP 538 A 1 HETATM 9 O O3A GTP . . . C 3 27.219 27.721 11.254 1 26.48 ? O3A GTP 538 A 1 HETATM 10 P PA GTP . . . C 3 27.949 26.451 10.569 1 24.84 ? PA GTP 538 A 1 HETATM 11 O O1A GTP . . . C 3 27.106 25.281 10.453 1 28.9 ? O1A GTP 538 A 1 HETATM 12 O O2A GTP . . . C 3 28.554 26.99 9.261 1 24.62 ? O2A GTP 538 A 1 HETATM 13 O O5' GTP . . . C 3 29.113 26.111 11.73 1 27.69 ? O5' GTP 538 A 1 HETATM 14 C C5' GTP . . . C 3 30.031 27.27 11.957 1 25.3 ? C5' GTP 538 A 1 HETATM 15 C C4' GTP . . . C 3 31.297 26.472 12.548 1 27.41 ? C4' GTP 538 A 1 HETATM 16 O O4' GTP . . . C 3 31 25.546 13.628 1 26.55 ? O4' GTP 538 A 1 HETATM 17 C C3' GTP . . . C 3 32.081 25.712 11.576 1 28.1 ? C3' GTP 538 A 1 HETATM 18 O O3' GTP . . . C 3 33.451 26.033 11.638 1 30.73 ? O3' GTP 538 A 1 HETATM 19 C C2' GTP . . . C 3 31.802 24.187 11.769 1 28.43 ? C2' GTP 538 A 1 HETATM 20 O O2' GTP . . . C 3 32.797 23.395 11.417 1 31.43 ? O2' GTP 538 A 1 HETATM 21 C C1' GTP . . . C 3 31.534 24.23 13.435 1 25.61 ? C1' GTP 538 A 1 HETATM 22 N N9 GTP . . . C 3 30.471 23.209 13.798 1 26.35 ? N9 GTP 538 A 1 HETATM 23 C C8 GTP . . . C 3 29.247 23.089 13.13 1 25.86 ? C8 GTP 538 A 1 HETATM 24 N N7 GTP . . . C 3 28.724 22.06 13.842 1 24.72 ? N7 GTP 538 A 1 HETATM 25 C C5 GTP . . . C 3 29.527 21.564 14.866 1 25.56 ? C5 GTP 538 A 1 HETATM 26 C C6 GTP . . . C 3 29.287 20.61 15.685 1 25.08 ? C6 GTP 538 A 1 HETATM 27 O O6 GTP . . . C 3 28.372 19.773 15.94 1 27.63 ? O6 GTP 538 A 1 HETATM 28 N N1 GTP . . . C 3 30.459 20.401 16.662 1 25.58 ? N1 GTP 538 A 1 HETATM 29 C C2 GTP . . . C 3 31.469 21.206 16.498 1 24.58 ? C2 GTP 538 A 1 HETATM 30 N N2 GTP . . . C 3 32.598 20.999 17.452 1 23.62 ? N2 GTP 538 A 1 HETATM 31 N N3 GTP . . . C 3 31.716 22.209 15.631 1 26.8 ? N3 GTP 538 A 1 HETATM 32 C C4 GTP . . . C 3 30.626 22.311 14.818 1 24.62 ? C4 GTP 538 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #