data_1M7O # _model_server_result.job_id UFY7JHC9p4cyjlORAtoLAQ _model_server_result.datetime_utc '2024-11-17 06:17:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m7o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":5401}' # _entry.id 1M7O # _exptl.entry_id 1M7O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.38 _cell.angle_gamma 90 _cell.entry_id 1M7O _cell.length_a 54.26 _cell.length_b 51.345 _cell.length_c 90.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M7O _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 3PG _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 3PG doub 1 n n C1 O2 3PG sing 2 n n C1 C2 3PG sing 3 n n O2 HO2 3PG sing 4 n n C2 O3 3PG sing 5 n n C2 C3 3PG sing 6 n n C2 H2 3PG sing 7 n n O3 HO3 3PG sing 8 n n C3 O1P 3PG sing 9 n n C3 H31 3PG sing 10 n n C3 H32 3PG sing 11 n n O1P P 3PG sing 12 n n P O2P 3PG doub 13 n n P O3P 3PG sing 14 n n P O4P 3PG sing 15 n n O3P HOP3 3PG sing 16 n n O4P HOP4 3PG sing 17 n n # _atom_sites.entry_id 1M7O _atom_sites.fract_transf_matrix[1][1] 0.01843 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000444 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3PG A 1 5401 5401 3PG 3PG . D 2 3PG B 1 6401 6401 3PG 3PG . E 3 HOH A 1 501 501 HOH HOH . E 3 HOH A 2 503 503 HOH HOH . E 3 HOH A 3 506 506 HOH HOH . E 3 HOH A 4 509 509 HOH HOH . E 3 HOH A 5 511 511 HOH HOH . E 3 HOH A 6 512 512 HOH HOH . E 3 HOH A 7 514 514 HOH HOH . E 3 HOH A 8 516 516 HOH HOH . E 3 HOH A 9 518 518 HOH HOH . E 3 HOH A 10 522 522 HOH HOH . E 3 HOH A 11 523 523 HOH HOH . E 3 HOH A 12 524 524 HOH HOH . E 3 HOH A 13 525 525 HOH HOH . E 3 HOH A 14 526 526 HOH HOH . E 3 HOH A 15 528 528 HOH HOH . E 3 HOH A 16 529 529 HOH HOH . E 3 HOH A 17 530 530 HOH HOH . E 3 HOH A 18 531 531 HOH HOH . E 3 HOH A 19 542 542 HOH HOH . E 3 HOH A 20 543 543 HOH HOH . E 3 HOH A 21 544 544 HOH HOH . E 3 HOH A 22 547 547 HOH HOH . E 3 HOH A 23 549 549 HOH HOH . E 3 HOH A 24 553 553 HOH HOH . E 3 HOH A 25 555 555 HOH HOH . E 3 HOH A 26 556 556 HOH HOH . E 3 HOH A 27 557 557 HOH HOH . E 3 HOH A 28 562 562 HOH HOH . E 3 HOH A 29 563 563 HOH HOH . E 3 HOH A 30 564 564 HOH HOH . E 3 HOH A 31 565 565 HOH HOH . E 3 HOH A 32 567 567 HOH HOH . E 3 HOH A 33 568 568 HOH HOH . E 3 HOH A 34 571 571 HOH HOH . E 3 HOH A 35 573 573 HOH HOH . E 3 HOH A 36 578 578 HOH HOH . E 3 HOH A 37 581 581 HOH HOH . E 3 HOH A 38 582 582 HOH HOH . E 3 HOH A 39 584 584 HOH HOH . E 3 HOH A 40 586 586 HOH HOH . E 3 HOH A 41 587 587 HOH HOH . E 3 HOH A 42 590 590 HOH HOH . E 3 HOH A 43 592 592 HOH HOH . E 3 HOH A 44 598 598 HOH HOH . E 3 HOH A 45 600 600 HOH HOH . E 3 HOH A 46 601 601 HOH HOH . E 3 HOH A 47 603 603 HOH HOH . E 3 HOH A 48 605 605 HOH HOH . E 3 HOH A 49 606 606 HOH HOH . E 3 HOH A 50 607 607 HOH HOH . E 3 HOH A 51 608 608 HOH HOH . E 3 HOH A 52 609 609 HOH HOH . E 3 HOH A 53 610 610 HOH HOH . E 3 HOH A 54 611 611 HOH HOH . E 3 HOH A 55 612 612 HOH HOH . E 3 HOH A 56 624 624 HOH HOH . E 3 HOH A 57 625 625 HOH HOH . E 3 HOH A 58 627 627 HOH HOH . E 3 HOH A 59 628 628 HOH HOH . E 3 HOH A 60 630 630 HOH HOH . F 3 HOH B 1 500 500 HOH HOH . F 3 HOH B 2 502 502 HOH HOH . F 3 HOH B 3 504 504 HOH HOH . F 3 HOH B 4 505 505 HOH HOH . F 3 HOH B 5 507 507 HOH HOH . F 3 HOH B 6 508 508 HOH HOH . F 3 HOH B 7 510 510 HOH HOH . F 3 HOH B 8 513 513 HOH HOH . F 3 HOH B 9 515 515 HOH HOH . F 3 HOH B 10 517 517 HOH HOH . F 3 HOH B 11 519 519 HOH HOH . F 3 HOH B 12 520 520 HOH HOH . F 3 HOH B 13 521 521 HOH HOH . F 3 HOH B 14 527 527 HOH HOH . F 3 HOH B 15 532 532 HOH HOH . F 3 HOH B 16 533 533 HOH HOH . F 3 HOH B 17 534 534 HOH HOH . F 3 HOH B 18 535 535 HOH HOH . F 3 HOH B 19 536 536 HOH HOH . F 3 HOH B 20 537 537 HOH HOH . F 3 HOH B 21 538 538 HOH HOH . F 3 HOH B 22 539 539 HOH HOH . F 3 HOH B 23 540 540 HOH HOH . F 3 HOH B 24 541 541 HOH HOH . F 3 HOH B 25 545 545 HOH HOH . F 3 HOH B 26 546 546 HOH HOH . F 3 HOH B 27 548 548 HOH HOH . F 3 HOH B 28 550 550 HOH HOH . F 3 HOH B 29 551 551 HOH HOH . F 3 HOH B 30 552 552 HOH HOH . F 3 HOH B 31 554 554 HOH HOH . F 3 HOH B 32 558 558 HOH HOH . F 3 HOH B 33 559 559 HOH HOH . F 3 HOH B 34 560 560 HOH HOH . F 3 HOH B 35 561 561 HOH HOH . F 3 HOH B 36 566 566 HOH HOH . F 3 HOH B 37 569 569 HOH HOH . F 3 HOH B 38 570 570 HOH HOH . F 3 HOH B 39 572 572 HOH HOH . F 3 HOH B 40 574 574 HOH HOH . F 3 HOH B 41 575 575 HOH HOH . F 3 HOH B 42 576 576 HOH HOH . F 3 HOH B 43 577 577 HOH HOH . F 3 HOH B 44 579 579 HOH HOH . F 3 HOH B 45 585 585 HOH HOH . F 3 HOH B 46 588 588 HOH HOH . F 3 HOH B 47 589 589 HOH HOH . F 3 HOH B 48 591 591 HOH HOH . F 3 HOH B 49 593 593 HOH HOH . F 3 HOH B 50 594 594 HOH HOH . F 3 HOH B 51 595 595 HOH HOH . F 3 HOH B 52 596 596 HOH HOH . F 3 HOH B 53 597 597 HOH HOH . F 3 HOH B 54 599 599 HOH HOH . F 3 HOH B 55 602 602 HOH HOH . F 3 HOH B 56 604 604 HOH HOH . F 3 HOH B 57 613 613 HOH HOH . F 3 HOH B 58 614 614 HOH HOH . F 3 HOH B 59 615 615 HOH HOH . F 3 HOH B 60 616 616 HOH HOH . F 3 HOH B 61 618 618 HOH HOH . F 3 HOH B 62 619 619 HOH HOH . F 3 HOH B 63 620 620 HOH HOH . F 3 HOH B 64 621 621 HOH HOH . F 3 HOH B 65 622 622 HOH HOH . F 3 HOH B 66 623 623 HOH HOH . F 3 HOH B 67 629 629 HOH HOH . F 3 HOH B 68 631 631 HOH HOH . F 3 HOH B 69 632 632 HOH HOH . F 3 HOH B 70 633 633 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3PG . . . C 2 5.146 14.806 22.985 1 70.64 ? C1 3PG 5401 A 1 HETATM 2 O O1 3PG . . . C 2 5.628 13.609 23.384 1 69.2 ? O1 3PG 5401 A 1 HETATM 3 O O2 3PG . . . C 2 5.138 15.79 23.887 1 71.11 ? O2 3PG 5401 A 1 HETATM 4 C C2 3PG . . . C 2 4.641 15.051 21.606 1 71.05 ? C2 3PG 5401 A 1 HETATM 5 O O3 3PG . . . C 2 4.788 13.828 20.872 1 71.94 ? O3 3PG 5401 A 1 HETATM 6 C C3 3PG . . . C 2 5.516 16.18 20.947 1 71.8 ? C3 3PG 5401 A 1 HETATM 7 O O1P 3PG . . . C 2 5.257 17.495 21.438 1 72.47 ? O1P 3PG 5401 A 1 HETATM 8 P P 3PG . . . C 2 6.27 18.601 20.619 1 73 ? P 3PG 5401 A 1 HETATM 9 O O2P 3PG . . . C 2 5.9 18.505 18.975 1 73.14 ? O2P 3PG 5401 A 1 HETATM 10 O O3P 3PG . . . C 2 5.983 20.171 21.16 1 72.37 ? O3P 3PG 5401 A 1 HETATM 11 O O4P 3PG . . . C 2 7.927 18.277 20.809 1 72.15 ? O4P 3PG 5401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #