data_1M7P # _model_server_result.job_id G9tph4Gvzf1hmAF-RxuQKA _model_server_result.datetime_utc '2024-11-17 02:49:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1m7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":6401}' # _entry.id 1M7P # _exptl.entry_id 1M7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.058 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCERALDEHYDE-3-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.39 _cell.angle_gamma 90 _cell.entry_id 1M7P _cell.length_a 54.124 _cell.length_b 51.082 _cell.length_c 89.549 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1M7P _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H7 O6 P' _chem_comp.formula_weight 170.058 _chem_comp.id G3H _chem_comp.mon_nstd_flag . _chem_comp.name GLYCERALDEHYDE-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3H doub 83 n n C1 C2 G3H sing 84 n n C1 H11 G3H sing 85 n n C2 O2 G3H sing 86 n n C2 C3 G3H sing 87 n n C2 H2 G3H sing 88 n n O2 HO2 G3H sing 89 n n C3 O1P G3H sing 90 n n C3 H31 G3H sing 91 n n C3 H32 G3H sing 92 n n O1P P G3H sing 93 n n O2P P G3H doub 94 n n O3P P G3H sing 95 n n O3P HOP3 G3H sing 96 n n O4P P G3H sing 97 n n O4P HOP4 G3H sing 98 n n # _atom_sites.entry_id 1M7P _atom_sites.fract_transf_matrix[1][1] 0.018476 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000448 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G3H A 1 5401 5401 G3H G3P . D 2 G3H B 1 6401 6401 G3H G3P . E 3 HOH A 1 503 503 HOH HOH . E 3 HOH A 2 506 506 HOH HOH . E 3 HOH A 3 507 507 HOH HOH . E 3 HOH A 4 508 508 HOH HOH . E 3 HOH A 5 514 514 HOH HOH . E 3 HOH A 6 516 516 HOH HOH . E 3 HOH A 7 521 521 HOH HOH . E 3 HOH A 8 522 522 HOH HOH . E 3 HOH A 9 523 523 HOH HOH . E 3 HOH A 10 525 525 HOH HOH . E 3 HOH A 11 527 527 HOH HOH . E 3 HOH A 12 529 529 HOH HOH . E 3 HOH A 13 532 532 HOH HOH . E 3 HOH A 14 533 533 HOH HOH . E 3 HOH A 15 535 535 HOH HOH . E 3 HOH A 16 536 536 HOH HOH . E 3 HOH A 17 539 539 HOH HOH . E 3 HOH A 18 540 540 HOH HOH . E 3 HOH A 19 543 543 HOH HOH . E 3 HOH A 20 544 544 HOH HOH . E 3 HOH A 21 545 545 HOH HOH . E 3 HOH A 22 546 546 HOH HOH . E 3 HOH A 23 547 547 HOH HOH . E 3 HOH A 24 548 548 HOH HOH . E 3 HOH A 25 550 550 HOH HOH . E 3 HOH A 26 552 552 HOH HOH . E 3 HOH A 27 554 554 HOH HOH . E 3 HOH A 28 559 559 HOH HOH . E 3 HOH A 29 560 560 HOH HOH . E 3 HOH A 30 561 561 HOH HOH . E 3 HOH A 31 563 563 HOH HOH . E 3 HOH A 32 567 567 HOH HOH . E 3 HOH A 33 575 575 HOH HOH . E 3 HOH A 34 580 580 HOH HOH . E 3 HOH A 35 585 585 HOH HOH . E 3 HOH A 36 586 586 HOH HOH . E 3 HOH A 37 588 588 HOH HOH . E 3 HOH A 38 589 589 HOH HOH . E 3 HOH A 39 591 591 HOH HOH . E 3 HOH A 40 594 594 HOH HOH . E 3 HOH A 41 595 595 HOH HOH . E 3 HOH A 42 596 596 HOH HOH . E 3 HOH A 43 597 597 HOH HOH . E 3 HOH A 44 598 598 HOH HOH . E 3 HOH A 45 599 599 HOH HOH . E 3 HOH A 46 600 600 HOH HOH . E 3 HOH A 47 613 613 HOH HOH . E 3 HOH A 48 623 623 HOH HOH . E 3 HOH A 49 626 626 HOH HOH . E 3 HOH A 50 628 628 HOH HOH . E 3 HOH A 51 629 629 HOH HOH . E 3 HOH A 52 630 630 HOH HOH . E 3 HOH A 53 631 631 HOH HOH . E 3 HOH A 54 632 632 HOH HOH . E 3 HOH A 55 634 634 HOH HOH . E 3 HOH A 56 638 638 HOH HOH . E 3 HOH A 57 641 641 HOH HOH . F 3 HOH B 1 500 500 HOH HOH . F 3 HOH B 2 501 501 HOH HOH . F 3 HOH B 3 502 502 HOH HOH . F 3 HOH B 4 504 504 HOH HOH . F 3 HOH B 5 505 505 HOH HOH . F 3 HOH B 6 509 509 HOH HOH . F 3 HOH B 7 510 510 HOH HOH . F 3 HOH B 8 511 511 HOH HOH . F 3 HOH B 9 512 512 HOH HOH . F 3 HOH B 10 513 513 HOH HOH . F 3 HOH B 11 515 515 HOH HOH . F 3 HOH B 12 517 517 HOH HOH . F 3 HOH B 13 518 518 HOH HOH . F 3 HOH B 14 519 519 HOH HOH . F 3 HOH B 15 520 520 HOH HOH . F 3 HOH B 16 524 524 HOH HOH . F 3 HOH B 17 526 526 HOH HOH . F 3 HOH B 18 528 528 HOH HOH . F 3 HOH B 19 530 530 HOH HOH . F 3 HOH B 20 531 531 HOH HOH . F 3 HOH B 21 534 534 HOH HOH . F 3 HOH B 22 537 537 HOH HOH . F 3 HOH B 23 538 538 HOH HOH . F 3 HOH B 24 541 541 HOH HOH . F 3 HOH B 25 542 542 HOH HOH . F 3 HOH B 26 549 549 HOH HOH . F 3 HOH B 27 551 551 HOH HOH . F 3 HOH B 28 553 553 HOH HOH . F 3 HOH B 29 555 555 HOH HOH . F 3 HOH B 30 556 556 HOH HOH . F 3 HOH B 31 557 557 HOH HOH . F 3 HOH B 32 558 558 HOH HOH . F 3 HOH B 33 562 562 HOH HOH . F 3 HOH B 34 564 564 HOH HOH . F 3 HOH B 35 565 565 HOH HOH . F 3 HOH B 36 566 566 HOH HOH . F 3 HOH B 37 568 568 HOH HOH . F 3 HOH B 38 569 569 HOH HOH . F 3 HOH B 39 570 570 HOH HOH . F 3 HOH B 40 571 571 HOH HOH . F 3 HOH B 41 572 572 HOH HOH . F 3 HOH B 42 573 573 HOH HOH . F 3 HOH B 43 574 574 HOH HOH . F 3 HOH B 44 576 576 HOH HOH . F 3 HOH B 45 577 577 HOH HOH . F 3 HOH B 46 578 578 HOH HOH . F 3 HOH B 47 579 579 HOH HOH . F 3 HOH B 48 581 581 HOH HOH . F 3 HOH B 49 582 582 HOH HOH . F 3 HOH B 50 584 584 HOH HOH . F 3 HOH B 51 587 587 HOH HOH . F 3 HOH B 52 590 590 HOH HOH . F 3 HOH B 53 592 592 HOH HOH . F 3 HOH B 54 593 593 HOH HOH . F 3 HOH B 55 601 601 HOH HOH . F 3 HOH B 56 603 603 HOH HOH . F 3 HOH B 57 604 604 HOH HOH . F 3 HOH B 58 605 605 HOH HOH . F 3 HOH B 59 606 606 HOH HOH . F 3 HOH B 60 607 607 HOH HOH . F 3 HOH B 61 608 608 HOH HOH . F 3 HOH B 62 609 609 HOH HOH . F 3 HOH B 63 610 610 HOH HOH . F 3 HOH B 64 611 611 HOH HOH . F 3 HOH B 65 612 612 HOH HOH . F 3 HOH B 66 614 614 HOH HOH . F 3 HOH B 67 615 615 HOH HOH . F 3 HOH B 68 616 616 HOH HOH . F 3 HOH B 69 617 617 HOH HOH . F 3 HOH B 70 618 618 HOH HOH . F 3 HOH B 71 619 619 HOH HOH . F 3 HOH B 72 620 620 HOH HOH . F 3 HOH B 73 622 622 HOH HOH . F 3 HOH B 74 625 625 HOH HOH . F 3 HOH B 75 627 627 HOH HOH . F 3 HOH B 76 636 636 HOH HOH . F 3 HOH B 77 639 639 HOH HOH . F 3 HOH B 78 640 640 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3H . . . D 2 22.254 -14.546 20.31 0.93 60.01 ? O1 G3H 6401 B 1 HETATM 2 C C1 G3H . . . D 2 21.563 -15.203 20.565 0.93 66.96 ? C1 G3H 6401 B 1 HETATM 3 C C2 G3H . . . D 2 20.777 -16.361 20.243 0.93 70.69 ? C2 G3H 6401 B 1 HETATM 4 O O2 G3H . . . D 2 19.616 -16.579 19.407 0.93 70.68 ? O2 G3H 6401 B 1 HETATM 5 C C3 G3H . . . D 2 20.661 -17.73 21.223 0.93 74.49 ? C3 G3H 6401 B 1 HETATM 6 O O1P G3H . . . D 2 20.088 -18.491 21.578 0.93 80.82 ? O1P G3H 6401 B 1 HETATM 7 O O2P G3H . . . D 2 19.576 -20.679 22.737 0.93 83.33 ? O2P G3H 6401 B 1 HETATM 8 O O3P G3H . . . D 2 21.336 -19.107 23.675 0.93 86.75 ? O3P G3H 6401 B 1 HETATM 9 O O4P G3H . . . D 2 18.901 -18.46 23.792 0.93 83.15 ? O4P G3H 6401 B 1 HETATM 10 P P G3H . . . D 2 19.967 -19.23 23.034 0.93 83.57 ? P G3H 6401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #